bac_id	bac_def	spacer_id	hit_contig_id	hit_contig_def	identity	alignment_length	mismatch	gapopen	query_start	query_end	hit_start	hit_end	crispr_array_of_hit_genome	evalue	bitscore	coverage	spacer_sequence	hit_contig_region	hit_contig_sequence	hmm_mismatch
NZ_CP047859	Staphylococcus aureus strain UP_1405 chromosome, complete genome	1.1|411006|33|NZ_CP047859|CRISPRCasFinder	NZ_CP047859.1	Staphylococcus aureus strain UP_1405 chromosome, complete genome	96.970	33	1	0	1	33	726566	726534	410980-411064|1244995-1245076|1293680-1293758|1684855-1684957|2344315-2344448|2419860-2419938|2584646-2584726|2695720-2695805|2708045-2708126|2836767-2836848	1.09e-08	50.7	1.0	TGGGCCCCAACACAGAGAAATTGGATTCCCAAT	726534-726566	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCA	1
NZ_CP047859	Staphylococcus aureus strain UP_1405 chromosome, complete genome	1.1|411006|33|NZ_CP047859|CRISPRCasFinder	NZ_CP047859.1	Staphylococcus aureus strain UP_1405 chromosome, complete genome	96.970	33	1	0	1	33	1288168	1288200	410980-411064|1244995-1245076|1293680-1293758|1684855-1684957|2344315-2344448|2419860-2419938|2584646-2584726|2695720-2695805|2708045-2708126|2836767-2836848	1.09e-08	50.7	1.0	TGGGCCCCAACACAGAGAAATTGGATTCCCAAT	1288168-1288200	TGGGCCCCAACACAGAGAAATTGGATTTCCAAT	1
NZ_CP047859	Staphylococcus aureus strain UP_1405 chromosome, complete genome	2.1|1245019|34|NZ_CP047859|CRISPRCasFinder	NZ_CP047859.1	Staphylococcus aureus strain UP_1405 chromosome, complete genome	97.059	34	1	0	1	34	726567	726534	410980-411064|1244995-1245076|1293680-1293758|1684855-1684957|2344315-2344448|2419860-2419938|2584646-2584726|2695720-2695805|2708045-2708126|2836767-2836848	4.16e-09	52.3	1.0	ATGGGCCCCAACAAAGAGAAATTGGATTCTCAAT	726534-726567	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT	1
NZ_CP047859	Staphylococcus aureus strain UP_1405 chromosome, complete genome	3.1|1293704|31|NZ_CP047859|CRISPRCasFinder	NZ_CP047859.1	Staphylococcus aureus strain UP_1405 chromosome, complete genome	100.000	31	0	0	1	31	1800029	1799999	410980-411064|1244995-1245076|1293680-1293758|1684855-1684957|2344315-2344448|2419860-2419938|2584646-2584726|2695720-2695805|2708045-2708126|2836767-2836848	7.79e-09	50.7	1.0	GGCAATGCAAGTTGGCGGGGCCCCAACACAG	1799999-1800029	CTGTGTTGGGGCCCCGCCAACTTGCATTGCC	0
NZ_CP047859	Staphylococcus aureus strain UP_1405 chromosome, complete genome	3.1|1293704|31|NZ_CP047859|CRISPRCasFinder	NZ_CP047859.1	Staphylococcus aureus strain UP_1405 chromosome, complete genome	96.774	31	1	0	1	31	376552	376582	410980-411064|1244995-1245076|1293680-1293758|1684855-1684957|2344315-2344448|2419860-2419938|2584646-2584726|2695720-2695805|2708045-2708126|2836767-2836848	7.01e-08	47.5	1.0	GGCAATGCAAGTTGGCGGGGCCCCAACACAG	376552-376582	GGCAATGGAAGTTGGCGGGGCCCCAACACAG	1
NZ_CP047859	Staphylococcus aureus strain UP_1405 chromosome, complete genome	3.1|1293704|31|NZ_CP047859|CRISPRCasFinder	NZ_CP047859.1	Staphylococcus aureus strain UP_1405 chromosome, complete genome	96.774	31	1	0	1	31	1800084	1800054	410980-411064|1244995-1245076|1293680-1293758|1684855-1684957|2344315-2344448|2419860-2419938|2584646-2584726|2695720-2695805|2708045-2708126|2836767-2836848	7.01e-08	47.5	1.0	GGCAATGCAAGTTGGCGGGGCCCCAACACAG	1800054-1800084	CTGTGTTGGGGCCCCGCCAACTTGCATTACC	1
NZ_CP047859	Staphylococcus aureus strain UP_1405 chromosome, complete genome	5.1|2344332|46|NZ_CP047859|PILER-CR	NZ_CP047859.1	Staphylococcus aureus strain UP_1405 chromosome, complete genome	95.652	46	2	0	1	46	2340808	2340853	410980-411064|1244995-1245076|1293680-1293758|1684855-1684957|2344315-2344448|2419860-2419938|2584646-2584726|2695720-2695805|2708045-2708126|2836767-2836848	1.58e-13	68.2	1.0	ACAAAGATAAACCTAATTATCAATTTGGTGGACACAACAGTGTTGA	2340808-2340853	ACAAAGATAAACCTAATTATCAATTCGGTGGACACAATAGTGTTGA	2
NZ_CP047859	Staphylococcus aureus strain UP_1405 chromosome, complete genome	5.2|2344395|37|NZ_CP047859|PILER-CR	NZ_CP047859.1	Staphylococcus aureus strain UP_1405 chromosome, complete genome	94.595	37	2	0	1	37	2340871	2340907	410980-411064|1244995-1245076|1293680-1293758|1684855-1684957|2344315-2344448|2419860-2419938|2584646-2584726|2695720-2695805|2708045-2708126|2836767-2836848	1.73e-09	53.9	1.0	TTCCAAAAGTAAGTGGTCAAAATGAAGGTCAACAAAC	2340871-2340907	TTCCAAAAGTAAGCGGCCAAAATGAAGGTCAACAAAC	2
NZ_CP047859	Staphylococcus aureus strain UP_1405 chromosome, complete genome	6.1|2419883|33|NZ_CP047859|CRISPRCasFinder	NZ_CP047859.1	Staphylococcus aureus strain UP_1405 chromosome, complete genome	96.970	33	1	0	1	33	1244706	1244738	410980-411064|1244995-1245076|1293680-1293758|1684855-1684957|2344315-2344448|2419860-2419938|2584646-2584726|2695720-2695805|2708045-2708126|2836767-2836848	1.09e-08	50.7	1.0	CAGTAGCTGGCGGAAAGTCAGCTTACAATAATG	1244706-1244738	CAGAAGCTGGCGGAAAGTCAGCTTACAATAATG	1
NZ_CP047859	Staphylococcus aureus strain UP_1405 chromosome, complete genome	6.1|2419883|33|NZ_CP047859|CRISPRCasFinder	NZ_CP047859.1	Staphylococcus aureus strain UP_1405 chromosome, complete genome	96.970	33	1	0	1	33	1280925	1280957	410980-411064|1244995-1245076|1293680-1293758|1684855-1684957|2344315-2344448|2419860-2419938|2584646-2584726|2695720-2695805|2708045-2708126|2836767-2836848	1.09e-08	50.7	1.0	CAGTAGCTGGCGGAAAGTCAGCTTACAATAATG	1280925-1280957	CAGAAGCTGGCGGAAAGTCAGCTTACAATAATG	1
NZ_CP047859	Staphylococcus aureus strain UP_1405 chromosome, complete genome	6.1|2419883|33|NZ_CP047859|CRISPRCasFinder	NZ_CP047859.1	Staphylococcus aureus strain UP_1405 chromosome, complete genome	93.939	33	2	0	1	33	2812781	2812749	410980-411064|1244995-1245076|1293680-1293758|1684855-1684957|2344315-2344448|2419860-2419938|2584646-2584726|2695720-2695805|2708045-2708126|2836767-2836848	9.82e-08	47.5	1.0	CAGTAGCTGGCGGAAAGTCAGCTTACAATAATG	2812749-2812781	CATTATTGTAAGCTGACTTTCCGCCAGCCTCTG	2
NZ_CP047859	Staphylococcus aureus strain UP_1405 chromosome, complete genome	6.1|2419883|33|NZ_CP047859|CRISPRCasFinder	NZ_CP047859.1	Staphylococcus aureus strain UP_1405 chromosome, complete genome	93.939	33	2	0	1	33	1280981	1281013	410980-411064|1244995-1245076|1293680-1293758|1684855-1684957|2344315-2344448|2419860-2419938|2584646-2584726|2695720-2695805|2708045-2708126|2836767-2836848	9.82e-08	47.5	1.0	CAGTAGCTGGCGGAAAGTCAGCTTACAATAATG	1280981-1281013	CAGAAGCTGACGGAAAGTCAGCTTACAATAATG	2
NZ_CP047859	Staphylococcus aureus strain UP_1405 chromosome, complete genome	7.1|2584671|31|NZ_CP047859|CRISPRCasFinder	NZ_CP047859.1	Staphylococcus aureus strain UP_1405 chromosome, complete genome	96.774	31	1	0	1	31	1280985	1281015	410980-411064|1244995-1245076|1293680-1293758|1684855-1684957|2344315-2344448|2419860-2419938|2584646-2584726|2695720-2695805|2708045-2708126|2836767-2836848	7.01e-08	47.5	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	1280985-1281015	AGCTGACGGAAAGTCAGCTTACAATAATGTG	1
NZ_CP047859	Staphylococcus aureus strain UP_1405 chromosome, complete genome	7.1|2584671|31|NZ_CP047859|CRISPRCasFinder	NZ_CP047859.1	Staphylococcus aureus strain UP_1405 chromosome, complete genome	93.548	31	2	0	1	31	396400	396370	410980-411064|1244995-1245076|1293680-1293758|1684855-1684957|2344315-2344448|2419860-2419938|2584646-2584726|2695720-2695805|2708045-2708126|2836767-2836848	6.31e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	396370-396400	CACATTATTGTAAGCTGACTTTCCGCCAGCT	2
NZ_CP047859	Staphylococcus aureus strain UP_1405 chromosome, complete genome	7.1|2584671|31|NZ_CP047859|CRISPRCasFinder	NZ_CP047859.1	Staphylococcus aureus strain UP_1405 chromosome, complete genome	93.548	31	2	0	1	31	726608	726578	410980-411064|1244995-1245076|1293680-1293758|1684855-1684957|2344315-2344448|2419860-2419938|2584646-2584726|2695720-2695805|2708045-2708126|2836767-2836848	6.31e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	726578-726608	CACATTATTGTAAGCTGACTTTTCGTCAGCT	2
NZ_CP047859	Staphylococcus aureus strain UP_1405 chromosome, complete genome	7.1|2584671|31|NZ_CP047859|CRISPRCasFinder	NZ_CP047859.1	Staphylococcus aureus strain UP_1405 chromosome, complete genome	93.548	31	2	0	1	31	932707	932677	410980-411064|1244995-1245076|1293680-1293758|1684855-1684957|2344315-2344448|2419860-2419938|2584646-2584726|2695720-2695805|2708045-2708126|2836767-2836848	6.31e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	932677-932707	CACATTATTGTAAGCTGACTTTTCGTCAGCT	2
NZ_CP047859	Staphylococcus aureus strain UP_1405 chromosome, complete genome	7.1|2584671|31|NZ_CP047859|CRISPRCasFinder	NZ_CP047859.1	Staphylococcus aureus strain UP_1405 chromosome, complete genome	93.548	31	2	0	1	31	1461637	1461607	410980-411064|1244995-1245076|1293680-1293758|1684855-1684957|2344315-2344448|2419860-2419938|2584646-2584726|2695720-2695805|2708045-2708126|2836767-2836848	6.31e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	1461607-1461637	CACATTATTGTAAGCTGACTTTTCGTCAGCT	2
NZ_CP047859	Staphylococcus aureus strain UP_1405 chromosome, complete genome	7.1|2584671|31|NZ_CP047859|CRISPRCasFinder	NZ_CP047859.1	Staphylococcus aureus strain UP_1405 chromosome, complete genome	93.548	31	2	0	1	31	1723694	1723664	410980-411064|1244995-1245076|1293680-1293758|1684855-1684957|2344315-2344448|2419860-2419938|2584646-2584726|2695720-2695805|2708045-2708126|2836767-2836848	6.31e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	1723664-1723694	CACATTATTGTAAGCTGACTTTTCGTCAGCT	2
NZ_CP047859	Staphylococcus aureus strain UP_1405 chromosome, complete genome	7.1|2584671|31|NZ_CP047859|CRISPRCasFinder	NZ_CP047859.1	Staphylococcus aureus strain UP_1405 chromosome, complete genome	93.548	31	2	0	1	31	80559	80589	410980-411064|1244995-1245076|1293680-1293758|1684855-1684957|2344315-2344448|2419860-2419938|2584646-2584726|2695720-2695805|2708045-2708126|2836767-2836848	6.31e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	80559-80589	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
NZ_CP047859	Staphylococcus aureus strain UP_1405 chromosome, complete genome	7.1|2584671|31|NZ_CP047859|CRISPRCasFinder	NZ_CP047859.1	Staphylococcus aureus strain UP_1405 chromosome, complete genome	93.548	31	2	0	1	31	638146	638176	410980-411064|1244995-1245076|1293680-1293758|1684855-1684957|2344315-2344448|2419860-2419938|2584646-2584726|2695720-2695805|2708045-2708126|2836767-2836848	6.31e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	638146-638176	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
NZ_CP047859	Staphylococcus aureus strain UP_1405 chromosome, complete genome	7.1|2584671|31|NZ_CP047859|CRISPRCasFinder	NZ_CP047859.1	Staphylococcus aureus strain UP_1405 chromosome, complete genome	93.548	31	2	0	1	31	1035268	1035298	410980-411064|1244995-1245076|1293680-1293758|1684855-1684957|2344315-2344448|2419860-2419938|2584646-2584726|2695720-2695805|2708045-2708126|2836767-2836848	6.31e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	1035268-1035298	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
NZ_CP047859	Staphylococcus aureus strain UP_1405 chromosome, complete genome	7.1|2584671|31|NZ_CP047859|CRISPRCasFinder	NZ_CP047859.1	Staphylococcus aureus strain UP_1405 chromosome, complete genome	93.548	31	2	0	1	31	1244710	1244740	410980-411064|1244995-1245076|1293680-1293758|1684855-1684957|2344315-2344448|2419860-2419938|2584646-2584726|2695720-2695805|2708045-2708126|2836767-2836848	6.31e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	1244710-1244740	AGCTGGCGGAAAGTCAGCTTACAATAATGTG	2
NZ_CP047859	Staphylococcus aureus strain UP_1405 chromosome, complete genome	7.1|2584671|31|NZ_CP047859|CRISPRCasFinder	NZ_CP047859.1	Staphylococcus aureus strain UP_1405 chromosome, complete genome	93.548	31	2	0	1	31	1280929	1280959	410980-411064|1244995-1245076|1293680-1293758|1684855-1684957|2344315-2344448|2419860-2419938|2584646-2584726|2695720-2695805|2708045-2708126|2836767-2836848	6.31e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	1280929-1280959	AGCTGGCGGAAAGTCAGCTTACAATAATGTG	2
NZ_CP047859	Staphylococcus aureus strain UP_1405 chromosome, complete genome	7.1|2584671|31|NZ_CP047859|CRISPRCasFinder	NZ_CP047859.1	Staphylococcus aureus strain UP_1405 chromosome, complete genome	93.548	31	2	0	1	31	2021798	2021828	410980-411064|1244995-1245076|1293680-1293758|1684855-1684957|2344315-2344448|2419860-2419938|2584646-2584726|2695720-2695805|2708045-2708126|2836767-2836848	6.31e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	2021798-2021828	AGCTGGCGGAAAGTCAGCTTACAATAATGTG	2
NZ_CP047859	Staphylococcus aureus strain UP_1405 chromosome, complete genome	7.1|2584671|31|NZ_CP047859|CRISPRCasFinder	NZ_CP047859.1	Staphylococcus aureus strain UP_1405 chromosome, complete genome	93.548	31	2	0	1	31	2595472	2595502	410980-411064|1244995-1245076|1293680-1293758|1684855-1684957|2344315-2344448|2419860-2419938|2584646-2584726|2695720-2695805|2708045-2708126|2836767-2836848	6.31e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	2595472-2595502	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
NZ_CP047859	Staphylococcus aureus strain UP_1405 chromosome, complete genome	10.1|2836791|34|NZ_CP047859|CRISPRCasFinder	NZ_CP047859.1	Staphylococcus aureus strain UP_1405 chromosome, complete genome	100.000	34	0	0	1	34	938308	938275	410980-411064|1244995-1245076|1293680-1293758|1684855-1684957|2344315-2344448|2419860-2419938|2584646-2584726|2695720-2695805|2708045-2708126|2836767-2836848	4.62e-10	55.5	1.0	CCAACACAGAGAATTTCGAAAAGAAATTCTACAA	938275-938308	TTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGG	0
NZ_CP047859	Staphylococcus aureus strain UP_1405 chromosome, complete genome	10.1|2836791|34|NZ_CP047859|CRISPRCasFinder	NZ_CP047859.1	Staphylococcus aureus strain UP_1405 chromosome, complete genome	100.000	34	0	0	1	34	1293726	1293759	410980-411064|1244995-1245076|1293680-1293758|1684855-1684957|2344315-2344448|2419860-2419938|2584646-2584726|2695720-2695805|2708045-2708126|2836767-2836848	4.62e-10	55.5	1.0	CCAACACAGAGAATTTCGAAAAGAAATTCTACAA	1293726-1293759	CCAACACAGAGAATTTCGAAAAGAAATTCTACAA	0
NZ_CP047859	Staphylococcus aureus strain UP_1405 chromosome, complete genome	10.1|2836791|34|NZ_CP047859|CRISPRCasFinder	NZ_CP047859.1	Staphylococcus aureus strain UP_1405 chromosome, complete genome	97.059	34	1	0	1	34	284329	284296	410980-411064|1244995-1245076|1293680-1293758|1684855-1684957|2344315-2344448|2419860-2419938|2584646-2584726|2695720-2695805|2708045-2708126|2836767-2836848	4.16e-09	52.3	1.0	CCAACACAGAGAATTTCGAAAAGAAATTCTACAA	284296-284329	TTGTAGAATTTCTTTTCGAAATTCTTTGTGTTGG	1
NZ_CP047859	Staphylococcus aureus strain UP_1405 chromosome, complete genome	10.1|2836791|34|NZ_CP047859|CRISPRCasFinder	NZ_CP047859.1	Staphylococcus aureus strain UP_1405 chromosome, complete genome	94.118	34	2	0	1	34	722160	722193	410980-411064|1244995-1245076|1293680-1293758|1684855-1684957|2344315-2344448|2419860-2419938|2584646-2584726|2695720-2695805|2708045-2708126|2836767-2836848	3.74e-08	49.1	1.0	CCAACACAGAGAATTTCGAAAAGAAATTCTACAA	722160-722193	CCAACACAGAGAATTTCGATAAGAAATTCCACAA	2
NZ_CP047859	Staphylococcus aureus strain UP_1405 chromosome, complete genome	10.1|2836791|34|NZ_CP047859|CRISPRCasFinder	NZ_CP047859.1	Staphylococcus aureus strain UP_1405 chromosome, complete genome	94.118	34	2	0	1	34	2146027	2146060	410980-411064|1244995-1245076|1293680-1293758|1684855-1684957|2344315-2344448|2419860-2419938|2584646-2584726|2695720-2695805|2708045-2708126|2836767-2836848	3.74e-08	49.1	1.0	CCAACACAGAGAATTTCGAAAAGAAATTCTACAA	2146027-2146060	CCAACAAAAAGAATTTCGAAAAGAAATTCTACAA	2
