The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	0	24287	2804489	portal,head,tail,protease,terminase,holin,capsid	Staphylococcus_phage(100.0%)	28	NA	NA
WP_000625088.1|0_1662_+|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
WP_000025274.1|1677_2865_+|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000642728.1|2848_3586_+|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_000154559.1|3609_4755_+|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
WP_000238236.1|4774_5059_+	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000150936.1|5048_5333_+|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000755150.1|5316_5679_+|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
WP_000114227.1|5675_6080_+	hypothetical protein	NA	G4KNQ5	Staphylococcus_phage	99.3	2.1e-68
WP_000565498.1|6076_6484_+	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000268733.1|6484_7129_+|tail	phage tail protein	tail	A0A1X9H0J2	Staphylococcus_phage	100.0	1.5e-119
WP_071621395.1|7170_7395_+	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_001096355.1|7444_7795_+	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_029549327.1|8039_12569_+|tail	phage tail tape measure protein	tail	A0A2I6PDK2	Staphylococcus_phage	99.7	0.0e+00
WP_000567408.1|12565_14050_+|tail	phage tail protein	tail	A0A2I6PDJ0	Staphylococcus_phage	100.0	1.2e-297
WP_000582165.1|14065_17851_+	hypothetical protein	NA	A0A1X9H0H3	Staphylococcus_phage	98.5	0.0e+00
WP_001153681.1|17840_17993_+	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_001040261.1|18039_18327_+	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_000539688.1|18384_18681_+	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_011447039.1|18830_19007_+|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_001791821.1|19059_19167_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000611512.1|19218_19473_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_000861038.1|19484_20240_+	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000919350.1|20430_20922_+	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
WP_020444758.1|21448_21907_+	amidase	NA	R9QTN8	Staphylococcus_phage	98.7	4.9e-85
WP_000727649.1|22001_22451_-	chemotaxis-inhibiting protein CHIPS	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
WP_000702263.1|23133_23484_+	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_001791826.1|23536_23797_-	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000669789.1|24107_24287_-	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
>prophage 2
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	29906	32353	2804489		Staphylococcus_phage(100.0%)	3	NA	NA
WP_000991300.1|29906_30803_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000645721.1|30803_31484_+	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000763048.1|31480_32353_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
>prophage 3
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	37600	38002	2804489		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000205103.1|37600_38002_-	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	1.3e-22
>prophage 4
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	42198	44228	2804489		Bacillus_virus(50.0%)	2	NA	NA
WP_000149686.1|42198_42759_-	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_000275721.1|43130_44228_+	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	2.5e-47
>prophage 5
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	48258	50542	2804489		Bacillus_virus(100.0%)	2	NA	NA
WP_160200265.1|48258_49728_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	44.3	1.2e-105
WP_000164017.1|49720_50542_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	4.4e-68
>prophage 6
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	54229	60996	2804489		Gordonia_phage(33.33%)	5	NA	NA
WP_000572878.1|54229_55525_+	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_001165363.1|55633_55936_+	hypothetical protein	NA	NA	NA	NA	NA
WP_160200266.1|56107_56800_+	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_000992924.1|56796_58989_+	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000774567.1|58992_60996_+	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.1	7.5e-114
>prophage 7
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	68054	73082	2804489		Catovirus(33.33%)	5	NA	NA
WP_001231459.1|68054_69002_+	diacylglycerol kinase	NA	A0A1V0SBJ0	Catovirus	27.8	1.5e-16
WP_001147862.1|69082_70444_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A1X9I6F4	Streptococcus_phage	43.8	1.4e-103
WP_000548781.1|70613_71144_+	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
WP_000140176.1|71390_72461_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_000613738.1|72527_73082_-	3'-5' exonuclease	NA	B5WZL1	Staphylococcus_phage	35.7	1.2e-29
>prophage 8
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	76534	76948	2804489		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001622129.1|76534_76948_+	hypothetical protein	NA	A0A1Q1PVU5	Staphylococcus_phage	39.8	5.1e-17
>prophage 9
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	81749	82379	2804489		Bacillus_phage(100.0%)	1	NA	NA
WP_000153535.1|81749_82379_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	30.8	8.1e-06
>prophage 10
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	88411	159694	2804489	portal,integrase,head,tRNA,tail,terminase,holin,plate,capsid	Staphylococcus_phage(85.94%)	84	84234:84252	95426:95444
84234:84252	attL	AAAATACCAGGAACAAATT	NA	NA	NA	NA
WP_001145732.1|88411_89458_-|integrase	site-specific integrase	integrase	A0A0H3U2V9	Staphylococcus_phage	100.0	4.2e-201
WP_153157762.1|89811_90273_-	toxin	NA	Q4ZBN7	Staphylococcus_phage	98.7	7.8e-83
WP_000333630.1|90285_90600_-	helix-turn-helix transcriptional regulator	NA	A0A0N9BAW4	Staphylococcus_phage	100.0	9.8e-53
WP_001121116.1|90751_90988_+	helix-turn-helix transcriptional regulator	NA	A0A0N9BAY2	Staphylococcus_phage	100.0	1.5e-37
WP_001648348.1|91001_91145_+	hypothetical protein	NA	A0A2I6PDG0	Staphylococcus_phage	93.5	2.1e-15
WP_000642492.1|91134_91344_-	hypothetical protein	NA	W5R9J5	Staphylococcus_phage	100.0	1.2e-30
WP_000933363.1|91783_91969_+	helix-turn-helix transcriptional regulator	NA	S4SUN2	Staphylococcus_phage	100.0	1.7e-25
WP_031785300.1|91970_92723_+	oxidoreductase	NA	S4SW96	Staphylococcus_phage	99.6	1.6e-138
WP_000939499.1|92738_92882_+	hypothetical protein	NA	A0A0H4ITW0	Staphylococcus_phage	97.9	5.6e-16
WP_001803402.1|92891_93545_-	hypothetical protein	NA	Q4ZBF5	Staphylococcus_virus	99.5	1.3e-115
WP_000594791.1|93615_93837_+	hypothetical protein	NA	A0A1X9H0Q4	Staphylococcus_phage	98.6	3.3e-31
WP_000066014.1|93829_93991_+	DUF1270 domain-containing protein	NA	Q4ZAZ7	Staphylococcus_virus	98.1	9.5e-20
WP_000291075.1|94082_94343_+	DUF1108 family protein	NA	A0A059T5A3	Staphylococcus_phage	100.0	1.2e-43
WP_000999048.1|94355_94892_+	hypothetical protein	NA	A0A2I6PD93	Staphylococcus_phage	100.0	1.7e-81
WP_000840496.1|94892_95543_+	single-stranded DNA-binding protein	NA	A0A0F6N3I5	Staphylococcus_phage	100.0	1.1e-119
95426:95444	attR	AAAATACCAGGAACAAATT	NA	NA	NA	NA
WP_001099010.1|95539_95983_+	single-stranded DNA-binding protein	NA	A0A2I6PD99	Staphylococcus_phage	95.9	3.2e-73
WP_031928974.1|95994_96669_+	phi PV83 orf 19-like protein	NA	A1KX69	Staphylococcus_virus	99.6	1.5e-130
WP_000414755.1|96807_97089_-	hypothetical protein	NA	A0A1W6JPU7	Staphylococcus_phage	100.0	2.6e-49
WP_115284618.1|97153_97909_+	helix-turn-helix domain-containing protein	NA	A0A1J0MGB2	Staphylococcus_phage	76.4	1.9e-78
WP_114647922.1|97921_98707_+	ATP-binding protein	NA	A0A0H4J332	Staphylococcus_phage	99.6	4.2e-145
WP_000628839.1|98703_98862_+	hypothetical protein	NA	A0A0H3U301	Staphylococcus_phage	98.1	4.5e-22
WP_001123684.1|98874_99096_+	DUF3269 family protein	NA	Q4ZBL4	Staphylococcus_phage	100.0	1.7e-35
WP_000401950.1|99105_99513_+	RusA family crossover junction endodeoxyribonuclease	NA	D2JGK8	Staphylococcus_phage	100.0	1.7e-73
WP_001187264.1|99512_99698_+	DUF3113 family protein	NA	D2JGK9	Staphylococcus_phage	100.0	7.0e-27
WP_000117792.1|99698_100058_+	hypothetical protein	NA	D2JGL0	Staphylococcus_phage	100.0	4.5e-62
WP_000022735.1|100057_100312_+	DUF3310 domain-containing protein	NA	D2JGL1	Staphylococcus_phage	100.0	1.3e-42
WP_000178877.1|100311_100560_+	hypothetical protein	NA	A0A0K1LL46	Staphylococcus_phage	98.8	8.0e-42
WP_000695766.1|100572_100974_+	hypothetical protein	NA	S4V6D5	Staphylococcus_phage	99.2	2.1e-68
WP_001105618.1|100970_101255_+	hypothetical protein	NA	S4V9L1	Staphylococcus_phage	100.0	3.2e-47
WP_001065023.1|101247_101484_+	DUF1024 family protein	NA	C8CH04	Staphylococcus_phage	100.0	1.1e-35
WP_114647923.1|101488_102031_+	dUTP pyrophosphatase	NA	Q4ZD81	Staphylococcus_virus	99.4	1.2e-95
WP_000195820.1|102067_102274_+	DUF1381 domain-containing protein	NA	A0A1X9H0C2	Staphylococcus_phage	100.0	1.3e-21
WP_001606759.1|102270_102444_+	transcriptional activator RinB	NA	R4IFL3	Staphylococcus_phage	100.0	2.9e-22
WP_000989954.1|102444_102810_+	hypothetical protein	NA	Q4ZBJ9	Staphylococcus_phage	100.0	3.6e-59
WP_000989960.1|102810_102957_+	hypothetical protein	NA	Q4ZBJ8	Staphylococcus_phage	100.0	7.5e-16
WP_000162702.1|102980_103403_+	RinA family phage transcriptional activator	NA	Q4ZBJ7	Staphylococcus_phage	100.0	1.2e-74
WP_000594088.1|103731_104226_+|terminase	terminase	terminase	A0A0N9BAX3	Staphylococcus_phage	100.0	3.4e-84
WP_001037586.1|104218_105442_+|terminase	PBSX family phage terminase large subunit	terminase	A0A0H3U2R6	Staphylococcus_phage	100.0	7.5e-242
WP_000177425.1|105438_106863_+|portal	phage portal protein	portal	A0A0E3T9I6	Staphylococcus_phage	99.8	6.2e-272
WP_033854646.1|106831_107782_+	hypothetical protein	NA	A0A0H3U2Z4	Staphylococcus_phage	98.7	5.2e-174
WP_001019221.1|107877_108462_+	DUF4355 domain-containing protein	NA	A0A2H4JDY6	uncultured_Caudovirales_phage	100.0	7.3e-78
WP_000235168.1|108478_109393_+|capsid	phage major capsid protein	capsid	A0A0H3U2U7	Staphylococcus_phage	100.0	1.2e-170
WP_000177351.1|109553_109904_+|head,tail	phage head-tail adapter protein	head,tail	A0A0H3U2R5	Staphylococcus_phage	100.0	1.9e-60
WP_000483041.1|109915_110251_+|head	phage head closure protein	head	A0A0E3TAH8	Staphylococcus_phage	100.0	8.8e-60
WP_001151323.1|110237_110645_+	HK97 gp10 family phage protein	NA	A0A0E3T8J0	Staphylococcus_phage	100.0	3.4e-74
WP_114647924.1|110657_111083_+	DUF3168 domain-containing protein	NA	A0A0E3XBP2	Staphylococcus_phage	98.6	4.7e-74
WP_000057582.1|111083_111641_+|tail	tail protein	tail	Q4ZBQ8	Staphylococcus_phage	100.0	8.2e-103
WP_000134337.1|111706_112213_+	hypothetical protein	NA	Q4ZBQ7	Staphylococcus_phage	100.0	2.7e-92
WP_160200268.1|112257_112542_+	hypothetical protein	NA	A0A0E3TAI0	Staphylococcus_phage	97.9	1.3e-43
WP_114647925.1|112545_115689_+|terminase	terminase	terminase	A0A059T7Q4	Staphylococcus_phage	93.7	0.0e+00
WP_042907189.1|115703_116645_+|tail	phage tail protein	tail	Q4ZBQ4	Staphylococcus_phage	99.4	2.2e-180
WP_160199683.1|116655_118542_+	peptidase	NA	A1KXA8	Staphylococcus_virus	99.8	0.0e+00
WP_064317455.1|118554_120453_+	hypothetical protein	NA	A0A2H4JCV8	uncultured_Caudovirales_phage	98.1	0.0e+00
WP_000259601.1|120452_122276_+|plate	phage baseplate upper protein	plate	A0A0F6N3G2	Staphylococcus_phage	99.7	0.0e+00
WP_000705897.1|122275_122653_+	DUF2977 domain-containing protein	NA	A0A0F6N3G4	Staphylococcus_phage	99.2	7.6e-60
WP_000782200.1|122656_122830_+	XkdX family protein	NA	A0A0F6N3L7	Staphylococcus_phage	100.0	6.6e-27
WP_000466778.1|122869_123169_+	DUF2951 domain-containing protein	NA	A0A0H4ITZ0	Staphylococcus_phage	100.0	7.6e-47
WP_114647927.1|123305_125180_+	CHAP domain-containing protein	NA	W5R999	Staphylococcus_phage	99.2	0.0e+00
WP_117171117.1|125192_126365_+|plate	BppU family phage baseplate upper protein	plate	Q8SDT0	Staphylococcus_phage	99.5	1.4e-197
WP_015978410.1|126370_126766_+	hypothetical protein	NA	A0A2H4PQP8	Staphylococcus_phage	100.0	2.1e-68
WP_094756967.1|126821_127259_+|holin	phage holin	holin	Q8SDS8	Staphylococcus_phage	99.3	2.0e-72
WP_114647928.1|127239_128685_+	CHAP domain-containing protein	NA	A0A0H3U310	Staphylococcus_phage	99.0	5.9e-294
WP_011447034.1|129329_129431_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001005407.1|129757_129919_+	hypothetical protein	NA	NA	NA	NA	NA
WP_160200269.1|130052_130568_+	type 1 glutamine amidotransferase	NA	NA	NA	NA	NA
WP_000830380.1|130909_131719_+	monofunctional peptidoglycan glycosyltransferase SgtB	NA	NA	NA	NA	NA
WP_001124427.1|131979_132798_+	recombination regulator RecX	NA	NA	NA	NA	NA
WP_000435806.1|132775_133090_+	YfhH family protein	NA	NA	NA	NA	NA
WP_000535840.1|133104_134622_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_000886472.1|134630_135467_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000379095.1|135727_136705_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_000284741.1|136856_137894_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_000251252.1|138196_138739_+	DUF402 domain-containing protein	NA	NA	NA	NA	NA
WP_000597236.1|139028_140765_+	SAV1866 family putative multidrug efflux ABC transporter	NA	W8CYL7	Bacillus_phage	30.4	1.3e-53
WP_001796444.1|140955_142050_-	aromatic acid exporter family protein	NA	NA	NA	NA	NA
WP_001011611.1|142342_143632_-	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_160200270.1|143712_144168_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_000869466.1|144173_145124_+	2-hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
WP_000110011.1|145220_145667_+	peroxide-responsive transcriptional repressor PerR	NA	NA	NA	NA	NA
WP_000063547.1|154448_155510_+	PTS transporter subunit IIC	NA	NA	NA	NA	NA
WP_000649917.1|155768_157226_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_001144055.1|157212_157941_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	1.0e-36
WP_001796463.1|158076_159219_+|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
WP_000181394.1|159223_159694_+|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
>prophage 11
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	168759	169104	2804489		Streptococcus_phage(100.0%)	1	NA	NA
WP_000290301.1|168759_169104_+	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	29.7	7.5e-06
>prophage 12
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	178737	179478	2804489		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000216874.1|178737_179478_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	1.2e-24
>prophage 13
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	187206	191470	2804489		Staphylococcus_phage(80.0%)	5	NA	NA
WP_010922839.1|187206_187989_+	staphylococcal enterotoxin type O	NA	A0A1X9H080	Staphylococcus_phage	36.7	1.1e-31
WP_000821652.1|188269_188989_+	staphylococcal enterotoxin type M	NA	A0A1X9H080	Staphylococcus_phage	35.8	4.0e-25
WP_000713846.1|189023_189752_+	staphylococcal enterotoxin type I	NA	A0A1X9H080	Staphylococcus_phage	38.6	2.5e-27
WP_000764689.1|189905_190676_+	staphylococcal enterotoxin type C1/U	NA	A0A097PAT7	Streptococcus_pyogenes_phage	43.2	1.4e-44
WP_001236362.1|190714_191470_+	staphylococcal enterotoxin type N	NA	A0A075M4C7	Staphylococcus_phage	41.4	6.0e-40
>prophage 14
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	194722	195852	2804489	transposase	Paenibacillus_phage(100.0%)	1	NA	NA
WP_098686295.1|194722_195852_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	54.3	5.2e-80
>prophage 15
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	199367	247081	2804489	tRNA,protease,transposase	Staphylococcus_phage(91.67%)	44	NA	NA
WP_098686295.1|199367_200496_+|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	54.3	5.2e-80
WP_000627532.1|200698_201040_-	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	91.2	4.8e-53
WP_000669031.1|201080_201707_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	84.1	3.9e-85
WP_000070666.1|201782_202778_-	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.2	1.9e-73
WP_001796416.1|202858_203509_-	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	70.4	1.3e-30
WP_072468941.1|203811_204267_+	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	2.3e-79
WP_160199688.1|204425_205904_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	94.9	3.0e-277
WP_160199689.1|205908_206910_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.3	1.5e-184
WP_000718111.1|206906_207164_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	97.6	1.0e-44
WP_000672013.1|207229_207703_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
WP_001827685.1|207707_208454_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	97.6	6.6e-140
WP_000109912.1|208833_210426_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
WP_000933821.1|210797_211991_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
WP_000366165.1|212115_213024_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.7	9.8e-138
WP_000453324.1|213235_214069_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	3.5e-158
WP_000623468.1|214318_214672_-	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	91.5	2.7e-19
WP_001200545.1|214668_215034_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	99.2	6.2e-59
WP_000091443.1|215289_215592_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001096494.1|215850_216564_+	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000492904.1|217299_217920_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001168913.1|218086_218722_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001030473.1|219018_219462_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	77.9	1.1e-49
WP_001152694.1|219448_219892_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000671060.1|220004_220475_-	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	85.2	3.8e-69
WP_000384171.1|220673_220898_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001032834.1|221172_222027_+	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000989113.1|222113_223406_-	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	94.9	3.0e-217
WP_000221174.1|223405_223720_-	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	96.2	1.8e-51
WP_001261660.1|224362_225865_+	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_160200337.1|226358_227390_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.5	2.0e-195
WP_000493880.1|227396_228029_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	97.6	2.1e-110
WP_001159030.1|228039_229221_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.5	5.6e-226
WP_001008551.1|229233_229698_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001196354.1|229819_230821_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_014937042.1|230932_231052_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000266096.1|231054_231882_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_000757543.1|232452_232854_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000764418.1|232970_233534_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	98.4	4.1e-102
WP_000526542.1|233530_234484_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_001025064.1|234593_235775_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	9.6e-218
WP_001108717.1|236066_238481_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	98.7	0.0e+00
WP_000836464.1|238502_238814_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	97.1	6.9e-51
WP_160199690.1|239138_245696_+	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	87.6	2.3e-292
WP_000284998.1|245812_247081_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	96.4	1.3e-55
>prophage 16
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	258196	263524	2804489		Staphylococcus_phage(50.0%)	3	NA	NA
WP_001091394.1|258196_259054_+	DUF1444 domain-containing protein	NA	A0A2H4PQY3	Staphylococcus_phage	99.3	4.4e-71
WP_001048366.1|259082_259679_+	DUF4479 domain-containing protein	NA	NA	NA	NA	NA
WP_000118323.1|259699_263524_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	47.0	3.4e-83
>prophage 17
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	272264	273971	2804489		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000862076.1|272264_273971_+	acetate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	99.6	4.7e-274
>prophage 18
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	280576	283207	2804489	protease,tRNA	Cronobacter_phage(50.0%)	2	NA	NA
WP_000186034.1|280576_281839_+|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	42.1	7.9e-85
WP_001279338.1|281932_283207_-|protease	trypsin-like serine protease	protease	A0A1B1IRD3	uncultured_Mediterranean_phage	29.0	1.7e-10
>prophage 19
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	286975	291110	2804489		Staphylococcus_phage(50.0%)	4	NA	NA
WP_000808830.1|286975_288580_-	phosphoglycerate dehydrogenase	NA	A0A2H4PQU8	Staphylococcus_phage	99.5	3.5e-114
WP_000291426.1|288566_289727_-	alanine--glyoxylate aminotransferase family protein	NA	NA	NA	NA	NA
WP_000553931.1|289840_290287_-	OsmC family protein	NA	NA	NA	NA	NA
WP_000174269.1|290366_291110_+	glycerophosphoryl diester phosphodiesterase	NA	M1HTS7	Paramecium_bursaria_Chlorella_virus	29.9	1.4e-17
>prophage 20
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	308884	312082	2804489		Streptomyces_phage(100.0%)	1	NA	NA
WP_000226934.1|308884_312082_+	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	30.3	1.1e-135
>prophage 21
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	317015	318773	2804489		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001232655.1|317015_318773_+	pyruvate kinase	NA	A0A2H4PQU5	Staphylococcus_phage	100.0	3.3e-41
>prophage 22
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	323657	331821	2804489		Feldmannia_irregularis_virus(25.0%)	5	NA	NA
WP_160200272.1|323657_324362_+	response regulator transcription factor	NA	Q6XM27	Feldmannia_irregularis_virus	28.7	1.6e-07
WP_072468943.1|324361_326023_+	PAS domain-containing protein	NA	W8CYF6	Bacillus_phage	39.4	5.8e-35
WP_160200273.1|326522_328010_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038313.1|328302_330933_+	DNA polymerase I	NA	A8E2B3	Enterococcus_phage	33.0	6.1e-47
WP_001114464.1|330948_331821_+	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	G3MA33	Bacillus_virus	37.4	1.7e-41
>prophage 23
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	335736	346889	2804489	protease,tRNA	Brevibacillus_phage(20.0%)	12	NA	NA
WP_000808621.1|335736_336657_+	primosomal protein DnaI	NA	S5MU12	Brevibacillus_phage	29.4	8.1e-31
WP_014937037.1|336749_336872_+	hypothetical protein	NA	NA	NA	NA	NA
WP_160199698.1|337068_339006_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	36.0	1.7e-115
WP_000049154.1|339432_340926_+	amino acid permease	NA	NA	NA	NA	NA
WP_001807711.1|341154_341682_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	33.8	2.4e-11
WP_001125540.1|341710_341911_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_001138360.1|341957_342314_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_000032657.1|342455_343064_+	NUDIX domain-containing protein	NA	A0A060AB76	Staphylococcus_phage	35.9	6.6e-21
WP_001280025.1|343082_344012_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001790560.1|344016_344127_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000127572.1|344174_345476_+	trigger factor	NA	NA	NA	NA	NA
WP_000472293.1|345626_346889_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	61.7	1.1e-139
>prophage 24
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	356457	359088	2804489	tRNA	Catovirus(100.0%)	1	NA	NA
WP_000425356.1|356457_359088_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	40.4	2.8e-153
>prophage 25
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	369020	404456	2804489	tRNA	uncultured_Mediterranean_phage(18.75%)	31	NA	NA
WP_001005764.1|369020_370025_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
WP_001019180.1|370026_371052_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001112045.1|371074_372214_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001160682.1|372232_372493_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_000749795.1|372767_375047_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_160200275.1|375250_377524_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.5	1.2e-64
WP_000364543.1|377545_378064_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.8	2.1e-28
WP_001058586.1|378492_380682_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	37.7	6.9e-12
WP_000869979.1|380693_381146_+|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
WP_000717800.1|381142_382018_+	cell wall amidase	NA	A0A0N9SGH1	Paenibacillus_phage	33.7	4.7e-12
WP_000590826.1|382478_383741_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000044803.1|383756_385523_+|tRNA	aspartate--tRNA ligase	tRNA	A0A2K9L0E9	Tupanvirus	26.9	4.9e-16
WP_001827648.1|385854_385983_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000682645.1|385982_386756_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_000102740.1|386916_388191_-	replication-associated recombination protein A	NA	A0A127AWE7	Bacillus_phage	50.7	1.8e-105
WP_000704122.1|388275_388698_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_000752909.1|388797_388980_+	CsbD family protein	NA	NA	NA	NA	NA
WP_000009238.1|389019_389166_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000985881.1|389402_390416_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_029549205.1|390727_391870_+	cysteine desulfurase	NA	A0A1X7QGF3	Faustovirus	29.3	8.3e-33
WP_000066103.1|391870_392989_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_000567023.1|393505_394174_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_001283324.1|394175_396653_+	ATP-dependent RecD-like DNA helicase	NA	A0A0K2FLP8	Brevibacillus_phage	29.0	1.1e-66
WP_000734073.1|396995_399626_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	34.4	3.2e-64
WP_000426912.1|399688_399949_+	IreB family regulatory phosphoprotein	NA	NA	NA	NA	NA
WP_000939059.1|399952_400381_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_000134779.1|400395_400704_+	DUF1292 domain-containing protein	NA	NA	NA	NA	NA
WP_000342266.1|400988_401627_+	O-methyltransferase	NA	A0A2P1JQT7	Mycobacterium_phage	28.8	1.6e-09
WP_000137775.1|401629_402553_+	U32 family peptidase	NA	NA	NA	NA	NA
WP_000848304.1|402564_403833_+	U32 family peptidase	NA	Q6DW11	Phage_TP	31.7	4.0e-36
WP_000648617.1|403832_404456_+	uridine kinase	NA	A0A1V0SAA3	Catovirus	41.1	2.8e-35
>prophage 26
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	411133	413521	2804489		Lactococcus_phage(50.0%)	2	NA	NA
WP_000542326.1|411133_412354_+	Fic family protein	NA	Q9AZ49	Lactococcus_phage	34.6	8.5e-52
WP_001622271.1|412768_413521_+	enterotoxin	NA	A0EX09	Staphylococcus_phage	40.9	1.9e-49
>prophage 27
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	420790	426954	2804489		Bacillus_phage(33.33%)	5	NA	NA
WP_000439693.1|420790_421252_+	ComE operon protein 2	NA	A7KUY9	Bacillus_phage	58.8	3.6e-35
WP_160200338.1|421310_423458_+	DNA internalization-related competence protein ComEC/Rec2	NA	Q332C0	Clostridium_botulinum_C_phage	32.8	4.5e-32
WP_001282573.1|423514_424489_+	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
WP_001274017.1|424533_424785_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_000368338.1|425130_426954_+	elongation factor 4	NA	A0A1S5SF82	Streptococcus_phage	25.1	6.1e-22
>prophage 28
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	430388	433496	2804489		Micromonas_pusilla_virus(50.0%)	2	NA	NA
WP_000034717.1|430388_432221_+	molecular chaperone DnaK	NA	G8DDB7	Micromonas_pusilla_virus	46.5	4.4e-137
WP_001119019.1|432356_433496_+	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	26.0	3.0e-27
>prophage 29
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	439965	440913	2804489		Rhizobium_phage(100.0%)	1	NA	NA
WP_001117767.1|439965_440913_+	PhoH family protein	NA	L7TP00	Rhizobium_phage	46.8	6.4e-47
>prophage 30
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	443967	457695	2804489	tRNA	Klosneuvirus(25.0%)	13	NA	NA
WP_001030077.1|443967_445359_-|tRNA	glycine--tRNA ligase	tRNA	A0A1V0SIF1	Klosneuvirus	27.5	1.6e-46
WP_072468919.1|445693_446317_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000411298.1|446327_447146_+	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_001217237.1|447206_449006_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	1.3e-53
WP_001283055.1|449229_450336_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_000624564.1|450466_451144_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_000683915.1|451146_452247_+	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	3.0e-08
WP_001062177.1|452360_453707_+	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
WP_000924214.1|453716_454607_+	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001213908.1|454732_455518_+	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000564318.1|455559_456423_+	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_001095258.1|456409_456820_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_000863556.1|457095_457695_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	54.7	9.2e-60
>prophage 31
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	463868	464492	2804489		Streptococcus_phage(100.0%)	1	NA	NA
WP_001223009.1|463868_464492_+	MBL fold metallo-hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	37.1	2.1e-30
>prophage 32
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	470036	472848	2804489		Prochlorococcus_phage(100.0%)	2	NA	NA
WP_000019698.1|470036_471383_+	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	NA	E3SN07	Prochlorococcus_phage	39.4	5.3e-63
WP_000202176.1|471375_472848_+	glycine dehydrogenase subunit 2	NA	E3SN07	Prochlorococcus_phage	41.3	2.8e-81
>prophage 33
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	480347	486917	2804489		Indivirus(66.67%)	6	NA	NA
WP_001286934.1|480347_481685_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	37.7	1.2e-43
WP_000159865.1|481677_481908_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_000183379.1|481885_482767_+	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	25.2	1.5e-10
WP_001124985.1|483197_483650_+	transcriptional regulator ArgR	NA	NA	NA	NA	NA
WP_061869711.1|483665_485345_+	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_001291530.1|485495_486917_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	26.7	5.1e-40
>prophage 34
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	493744	495151	2804489		Synechococcus_phage(100.0%)	1	NA	NA
WP_000193707.1|493744_495151_+	NADP-dependent phosphogluconate dehydrogenase	NA	A0A222YX62	Synechococcus_phage	31.1	4.3e-31
>prophage 35
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	499797	501282	2804489		Cyanophage(100.0%)	1	NA	NA
WP_000105075.1|499797_501282_-	glucose-6-phosphate dehydrogenase	NA	M4SIY3	Cyanophage	37.8	2.4e-80
>prophage 36
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	506946	521372	2804489		Bacillus_phage(28.57%)	14	NA	NA
WP_000447733.1|506946_507834_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	31.1	5.6e-37
WP_001183432.1|507911_508418_-	DUF309 domain-containing protein	NA	NA	NA	NA	NA
WP_000273372.1|508509_509241_+	segregation and condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	21.8	7.9e-05
WP_000368647.1|509233_509776_+	SMC-Scp complex subunit ScpB	NA	NA	NA	NA	NA
WP_000159580.1|509768_510506_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_000064074.1|510638_511364_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	43.0	6.0e-45
WP_000987760.1|511344_513096_+	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	33.3	1.3e-21
WP_001622322.1|513347_514277_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001033750.1|514269_516432_+	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	53.5	7.0e-49
WP_000476856.1|516522_517437_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001186906.1|518042_518588_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_001151999.1|518693_518942_-	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	6.4e-15
WP_001163808.1|519049_520003_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029549193.1|519992_521372_+	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.6	2.9e-56
>prophage 37
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	530797	536287	2804489		Bacillus_phage(25.0%)	7	NA	NA
WP_001043863.1|530797_531070_+	DNA-binding protein HU	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000450565.1|531500_532073_+	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_000774683.1|532075_532801_+	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_001827577.1|532817_533762_+	heptaprenyl diphosphate synthase subunit II	NA	A0A1V0SE37	Indivirus	24.0	2.1e-10
WP_000442481.1|533853_534303_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	5.4e-28
WP_000789524.1|534512_534713_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001269939.1|535120_536287_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.3	2.6e-34
>prophage 38
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	539949	540525	2804489		Bacillus_virus(100.0%)	1	NA	NA
WP_000005212.1|539949_540525_+	IDEAL domain-containing protein	NA	G3MAV7	Bacillus_virus	27.2	2.1e-08
>prophage 39
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	543911	551418	2804489	tRNA	unidentified_phage(25.0%)	5	NA	NA
WP_000361547.1|543911_545114_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	43.3	1.9e-35
WP_000049921.1|545100_546072_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000525057.1|546095_548789_+	ATP-dependent helicase	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
WP_000858795.1|549110_550403_+|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	4.3e-54
WP_000362215.1|550731_551418_+	DnaD domain-containing protein	NA	Q938N2	Temperate_phage	31.4	1.2e-07
>prophage 40
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	555109	555736	2804489		Bacillus_phage(100.0%)	1	NA	NA
WP_001108885.1|555109_555736_-	Holliday junction resolvase RecU	NA	A0A1C8E9C3	Bacillus_phage	35.5	1.7e-24
>prophage 41
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	565060	565939	2804489		Bacillus_phage(100.0%)	1	NA	NA
WP_001133028.1|565060_565939_+	5'-3' exonuclease	NA	S5M4P0	Bacillus_phage	29.5	1.1e-19
>prophage 42
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	604301	613690	2804489		Staphylococcus_phage(60.0%)	13	NA	NA
WP_000282160.1|604301_605006_-	queuosine precursor transporter	NA	A0A2H4J2N7	uncultured_Caudovirales_phage	23.8	8.4e-12
WP_001795441.1|605250_605445_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_001165814.1|605456_605708_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000404632.1|605744_606869_+	virulence factor	NA	NA	NA	NA	NA
WP_000995282.1|606884_607322_+	BrxA/BrxB family bacilliredoxin	NA	NA	NA	NA	NA
WP_000934885.1|607745_608702_+	thymidylate synthase	NA	A0A0N9SH48	Staphylococcus_phage	85.2	1.6e-167
WP_000175742.1|608901_609381_+	dihydrofolate reductase	NA	A0A0N9S8H6	Staphylococcus_phage	79.2	4.5e-73
WP_000166049.1|609395_610235_+	fatty acid kinase FakB2	NA	A0A0N9SI50	Staphylococcus_phage	76.5	3.0e-48
WP_000159902.1|610320_610854_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_000913317.1|610846_611275_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA	NA
WP_000473654.1|611286_611787_+	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
WP_000801007.1|611786_612008_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000342148.1|612199_613690_+	S41 family peptidase	NA	A0A0R6PIZ1	Moraxella_phage	30.5	2.3e-22
>prophage 43
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	617098	619110	2804489		Bacillus_phage(50.0%)	2	NA	NA
WP_000192137.1|617098_617758_+	response regulator transcription factor ArlR	NA	W8CYM9	Bacillus_phage	33.8	1.1e-34
WP_160200276.1|617754_619110_+	sensor histidine kinase ArlS	NA	A0A1V0SGX0	Hokovirus	27.8	7.8e-14
>prophage 44
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	626779	627571	2804489		Halovirus(100.0%)	1	NA	NA
WP_001185421.1|626779_627571_+	MoxR family ATPase	NA	R4TG24	Halovirus	34.2	3.3e-12
>prophage 45
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	631104	636715	2804489	protease,lysis	Lactobacillus_phage(33.33%)	8	NA	NA
WP_000138414.1|631104_632241_-	toxic anion resistance protein	NA	A0A291I9K4	Lactobacillus_phage	28.0	2.2e-33
WP_001796534.1|632272_632902_-|lysis	5-bromo-4-chloroindolyl phosphate hydrolysis protein	lysis	NA	NA	NA	NA
WP_001215908.1|632920_633190_-	acylphosphatase	NA	NA	NA	NA	NA
WP_000269923.1|633352_633661_+	DUF1033 family protein	NA	NA	NA	NA	NA
WP_000809131.1|633831_634032_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	66.2	8.4e-18
WP_000876215.1|634228_634630_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000275771.1|634754_635372_+|protease	protease	protease	NA	NA	NA	NA
WP_000216938.1|635449_636715_-	diaminopimelate decarboxylase	NA	A0A0P0YM38	Yellowstone_lake_phycodnavirus	23.5	9.5e-14
>prophage 46
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	644558	646160	2804489		Klosneuvirus(100.0%)	1	NA	NA
WP_000942303.1|644558_646160_-	ATP-binding cassette domain-containing protein	NA	A0A1V0SKJ1	Klosneuvirus	25.7	5.5e-51
>prophage 47
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	650585	658179	2804489		Indivirus(25.0%)	8	NA	NA
WP_000194851.1|650585_651437_+	phosphate ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	29.2	2.6e-15
WP_000974853.1|651443_652085_+	phosphate signaling complex protein PhoU	NA	NA	NA	NA	NA
WP_000077577.1|652224_654039_-	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	47.0	1.1e-153
WP_000171798.1|654243_654588_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000469973.1|654915_655902_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000946381.1|655894_656725_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000052306.1|656711_657485_+	ABC transporter ATP-binding protein	NA	A0A2H4UUX5	Bodo_saltans_virus	25.7	2.2e-05
WP_000571261.1|657477_658179_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	30.3	9.0e-14
>prophage 48
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	665673	668028	2804489		Acinetobacter_phage(100.0%)	3	NA	NA
WP_000153718.1|665673_666456_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	36.3	1.3e-26
WP_160199714.1|666457_667456_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	34.3	1.1e-33
WP_000604801.1|667461_668028_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	31.8	5.0e-23
>prophage 49
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	672347	673610	2804489		Bacillus_phage(100.0%)	1	NA	NA
WP_000283026.1|672347_673610_-	Y-family DNA polymerase	NA	O64031	Bacillus_phage	44.6	2.6e-96
>prophage 50
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	683268	687662	2804489		Bacillus_phage(50.0%)	2	NA	NA
WP_001657208.1|683268_685671_-	DNA topoisomerase IV subunit A	NA	A0A172JHV7	Bacillus_phage	32.1	1.1e-92
WP_111028600.1|685670_687662_-	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	40.4	2.3e-115
>prophage 51
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	693285	694932	2804489		Vibrio_phage(100.0%)	1	NA	NA
WP_001088978.1|693285_694932_-	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	24.4	2.5e-22
>prophage 52
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	698601	699723	2804489		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000691306.1|698601_699723_-	exonuclease SbcCD subunit D	NA	A0A1X9I9U0	Staphylococcus_phage	22.7	4.3e-10
>prophage 53
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	703872	709527	2804489		Phage_Wrath(25.0%)	7	NA	NA
WP_001208755.1|703872_704496_+	transcriptional repressor LexA	NA	A0A1B2APZ1	Phage_Wrath	63.8	5.9e-17
WP_000380739.1|704875_705739_-	CAP domain-containing protein	NA	U5Q0C0	Bacillus_phage	41.5	9.1e-16
WP_001791425.1|705812_705917_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000688134.1|705913_706891_-	GMP reductase	NA	Q4ZCY7	Staphylococcus_virus	99.4	2.3e-185
WP_001085655.1|707047_707317_-	30S ribosomal protein S14	NA	NA	NA	NA	NA
WP_001265708.1|707769_707919_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_000082546.1|708009_709527_-	catalase	NA	A0A2K9L0T1	Tupanvirus	43.2	1.8e-91
>prophage 54
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	719663	723939	2804489		Bacillus_phage(50.0%)	6	NA	NA
WP_000841351.1|719663_720197_-	thermonuclease family protein	NA	A0A1P8CWK6	Bacillus_phage	43.5	3.4e-21
WP_001027140.1|720335_720524_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000623460.1|720636_721239_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000670290.1|721235_722327_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_000243879.1|722330_723062_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_001796717.1|723036_723939_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	28.8	3.7e-20
>prophage 55
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	729719	744204	2804489	head,portal,integrase,terminase	Staphylococcus_phage(57.14%)	23	725899:725916	750365:750382
725899:725916	attL	ATTCAATCATTAATATAT	NA	NA	NA	NA
WP_078103007.1|729719_730712_-|head	head morphogenesis protein	head	Q4ZE35	Staphylococcus_virus	70.4	5.3e-52
WP_000158569.1|731241_732690_-|portal	phage portal protein	portal	Q4ZE36	Staphylococcus_virus	69.6	1.9e-196
WP_000207540.1|732702_733977_-|terminase	PBSX family phage terminase large subunit	terminase	Q4ZE37	Staphylococcus_virus	76.4	4.2e-195
WP_000090969.1|733963_734392_-	helix-turn-helix domain-containing protein	NA	A1EAE0	Streptococcus_phage	45.1	1.1e-25
WP_000653928.1|734543_735032_-	hypothetical protein	NA	R9TMH4	Paenibacillus_phage	27.7	1.9e-07
WP_160200278.1|735308_735773_-	hypothetical protein	NA	C9E2P0	Enterococcus_phage	43.7	2.5e-20
WP_025174108.1|735769_735877_-	DUF1381 domain-containing protein	NA	C8CH06	Staphylococcus_phage	84.4	1.4e-06
WP_000185174.1|736018_736549_-	nucleotide pyrophosphohydrolase	NA	A0A1P8VVP1	Streptococcus_phage	39.1	8.0e-23
WP_000714365.1|736857_737016_-	hypothetical protein	NA	A0A0E3T9L7	Staphylococcus_phage	90.4	7.9e-19
WP_000945229.1|737030_737321_-	hypothetical protein	NA	A0A223LIA9	Staphylococcus_phage	58.1	5.5e-18
WP_043859346.1|737321_738236_-	DnaD domain protein	NA	A0A1P8L6F0	Staphylococcus_phage	51.3	1.1e-48
WP_076679818.1|738249_738744_-	single-stranded DNA-binding protein	NA	A7TWM8	Staphylococcus_phage	94.0	9.9e-84
WP_000818736.1|738824_739604_-	ATP-binding protein	NA	A0A1W6JPW0	Staphylococcus_phage	88.8	9.3e-129
WP_001004328.1|739604_740141_-	hypothetical protein	NA	A0A0H3U480	Staphylococcus_phage	81.4	1.1e-75
WP_000786635.1|740145_740412_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	53.6	3.9e-18
WP_160199720.1|740401_740719_-	DUF2482 family protein	NA	W5RAK4	Staphylococcus_phage	80.6	2.1e-39
WP_000072840.1|740805_740967_-	DUF1270 family protein	NA	R4IH12	Staphylococcus_phage	69.8	1.1e-12
WP_000789021.1|741137_741419_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000842950.1|741443_741680_-	DUF739 family protein	NA	A0A2I6PDH8	Staphylococcus_phage	82.4	7.4e-29
WP_001083979.1|741841_742207_+	helix-turn-helix domain-containing protein	NA	R9QTP6	Staphylococcus_phage	47.9	1.8e-21
WP_000554409.1|742353_742737_+	hypothetical protein	NA	NA	NA	NA	NA
WP_160199721.1|742748_743444_+	hypothetical protein	NA	A0A2H4J5B8	uncultured_Caudovirales_phage	50.9	1.8e-06
WP_000146714.1|743496_744204_+|integrase	tyrosine-type recombinase/integrase	integrase	V9QKF1	Oenococcus_phage	26.2	4.7e-10
750365:750382	attR	ATATATTAATGATTGAAT	NA	NA	NA	NA
>prophage 56
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	748821	749298	2804489		Fowlpox_virus(100.0%)	1	NA	NA
WP_000448081.1|748821_749298_+	glutathione peroxidase	NA	Q70H87	Fowlpox_virus	38.0	2.7e-22
>prophage 57
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	755241	761723	2804489		Acanthocystis_turfacea_Chlorella_virus(33.33%)	4	NA	NA
WP_001103747.1|755241_756060_-	aquaporin family protein	NA	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	35.1	3.1e-26
WP_001072707.1|756534_757077_-	glycerol-3-phosphate responsive antiterminator	NA	NA	NA	NA	NA
WP_000516248.1|757082_759092_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	29.5	3.1e-59
WP_000073337.1|759104_761723_-	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	23.5	8.5e-41
>prophage 58
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	771137	772181	2804489		Bacillus_phage(100.0%)	1	NA	NA
WP_000368166.1|771137_772181_-	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	69.2	9.3e-124
>prophage 59
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	776381	781925	2804489		Bacillus_virus(33.33%)	4	NA	NA
WP_000664766.1|776381_777668_-	insulinase family protein	NA	G3MBJ8	Bacillus_virus	27.9	6.7e-15
WP_000089944.1|777667_778933_-	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	26.8	2.0e-40
WP_001293306.1|778963_779677_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_072468899.1|779681_781925_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	47.7	9.1e-84
>prophage 60
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	787063	798878	2804489	tRNA	Klosneuvirus(33.33%)	9	NA	NA
WP_000864185.1|787063_788035_-	riboflavin biosynthesis protein RibF	NA	A0A1V0SJE1	Klosneuvirus	32.1	1.7e-07
WP_000282307.1|788049_788967_-|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_000097322.1|789136_789487_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_000043642.1|789873_791991_-	translation initiation factor IF-2	NA	E3T4N3	Cafeteria_roenbergensis_virus	25.1	2.4e-25
WP_000020856.1|791995_792313_-	YlxQ family RNA-binding protein	NA	NA	NA	NA	NA
WP_000727423.1|792309_792594_-	YlxR family protein	NA	NA	NA	NA	NA
WP_000097463.1|792614_793790_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_000036631.1|793810_794278_-	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_078064710.1|794567_798878_-	PolC-type DNA polymerase III	NA	A0A0A8WJ41	Clostridium_phage	41.2	3.5e-23
>prophage 61
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	803151	803922	2804489		Flavobacterium_phage(100.0%)	1	NA	NA
WP_000473705.1|803151_803922_-	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	41.5	7.3e-25
>prophage 62
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	808695	822368	2804489	tRNA,protease	Erwinia_phage(16.67%)	11	NA	NA
WP_000379054.1|808695_810099_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A1B2IDZ7	Erwinia_phage	25.6	4.9e-27
WP_000072681.1|810164_810710_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_001015604.1|810706_811603_-	tyrosine recombinase XerC	NA	A0A0K2CP59	Brevibacillus_phage	31.9	4.6e-31
WP_000195251.1|812020_813328_-|tRNA	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	tRNA	NA	NA	NA	NA
WP_001622395.1|813483_815559_-	type I DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	39.2	2.3e-105
WP_000620185.1|815732_816605_-	DNA-protecting protein DprA	NA	NA	NA	NA	NA
WP_000672866.1|816776_818021_-	FemA/FemB family glycyltransferase FmhC	NA	NA	NA	NA	NA
WP_001041652.1|818048_819167_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A1W6JQB6	Staphylococcus_phage	61.1	1.2e-49
WP_000110253.1|819395_820304_-	succinate--CoA ligase subunit alpha	NA	A0A2K9L1S3	Tupanvirus	33.2	3.0e-17
WP_001020801.1|820325_821492_-	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA	NA
WP_000176404.1|821600_822368_-	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	44.1	2.5e-25
>prophage 63
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	835750	837807	2804489		Acanthamoeba_polyphaga_mimivirus(33.33%)	3	NA	NA
WP_000043237.1|835750_836482_-	ribonuclease III	NA	A0A0G2Y7P9	Acanthamoeba_polyphaga_mimivirus	28.8	5.9e-24
WP_000426914.1|836596_836830_-	acyl carrier protein	NA	E3SSM9	Prochlorococcus_phage	63.3	1.6e-07
WP_000167269.1|837072_837807_-	3-oxoacyl-[acyl-carrier-protein] reductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	30.3	3.1e-17
>prophage 64
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	848177	850172	2804489		Moumouvirus(100.0%)	1	NA	NA
WP_000579546.1|848177_850172_-	serine/threonine protein kinase Stk1	NA	M1PCM5	Moumouvirus	34.8	5.5e-24
>prophage 65
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	853319	854255	2804489	tRNA	Prochlorococcus_phage(100.0%)	1	NA	NA
WP_000161292.1|853319_854255_-|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	28.0	4.7e-10
>prophage 66
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	859259	861516	2804489		Methanothermobacter_phage(50.0%)	3	NA	NA
WP_000722167.1|859259_860459_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	32.7	2.7e-42
WP_050964209.1|860674_860893_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_000368225.1|860892_861516_-	guanylate kinase	NA	A0A143DIC6	Abalone_herpesvirus	34.1	6.1e-22
>prophage 67
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	864882	865494	2804489		Pandoravirus(100.0%)	1	NA	NA
WP_001040247.1|864882_865494_-	orotate phosphoribosyltransferase	NA	S4VS55	Pandoravirus	33.8	2.1e-27
>prophage 68
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	869461	874072	2804489		Halovirus(33.33%)	4	NA	NA
WP_001190913.1|869461_870562_-	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	36.7	5.6e-63
WP_000767035.1|870563_871838_-	dihydroorotase	NA	NA	NA	NA	NA
WP_001016170.1|871855_872737_-	aspartate carbamoyltransferase catalytic subunit	NA	A0A1J0F9B8	Only_Syngen_Nebraska_virus	33.9	6.0e-31
WP_001178613.1|872764_874072_-	uracil transporter	NA	Q9KX94	Enterobacteria_phage	34.0	3.3e-54
>prophage 69
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	878005	880759	2804489	tRNA	Orpheovirus(100.0%)	1	NA	NA
WP_029549171.1|878005_880759_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A2I2L3Y0	Orpheovirus	28.0	4.7e-90
>prophage 70
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	900329	900518	2804489		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001245799.1|900329_900518_-	hypothetical protein	NA	A0A0K1LL29	Staphylococcus_phage	85.2	8.5e-20
>prophage 71
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	909402	913446	2804489		Staphylococcus_phage(66.67%)	6	NA	NA
WP_000192697.1|909402_909615_-	hypothetical protein	NA	Q4ZBW5	Staphylococcus_virus	69.2	8.1e-19
WP_000765705.1|909598_909745_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000857478.1|910412_911372_+	beta-channel forming cytolysin	NA	A0A2H4PQH7	Staphylococcus_phage	30.6	3.3e-35
WP_000231332.1|911825_912059_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001032820.1|912667_912853_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000669539.1|913095_913446_-	complement inhibitor SCIN family protein	NA	A7TWS0	Staphylococcus_phage	51.8	6.4e-21
>prophage 72
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	924918	929476	2804489		Staphylococcus_phage(33.33%)	3	NA	NA
WP_001018928.1|924918_925233_-	thioredoxin	NA	A0A1X9I9P5	Staphylococcus_phage	46.6	6.6e-25
WP_001249279.1|925405_927754_-	endonuclease MutS2	NA	F2QAF8	Phaeocystis_pouchetii_virus	25.3	8.5e-16
WP_000161953.1|927763_929476_-	DNA polymerase/3'-5' exonuclease PolX	NA	A0A2H4UV14	Bodo_saltans_virus	24.0	1.8e-15
>prophage 73
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	934489	935548	2804489	tRNA	Orpheovirus(100.0%)	1	NA	NA
WP_000003566.1|934489_935548_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2I2L4E3	Orpheovirus	35.5	1.9e-31
>prophage 74
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	947492	950389	2804489		uncultured_Mediterranean_phage(50.0%)	5	NA	NA
WP_000401377.1|947492_947975_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	46.2	2.6e-28
WP_001263798.1|947976_948519_-	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_000814568.1|948588_948978_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001049150.1|948980_949235_-	YlbG family protein	NA	NA	NA	NA	NA
WP_000757595.1|949459_950389_+	glycerophosphodiester phosphodiesterase	NA	M1I1K8	Paramecium_bursaria_Chlorella_virus	26.2	1.3e-12
>prophage 75
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	961907	963755	2804489		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_000182654.1|961907_963755_-	translational GTPase TypA	NA	A0A2K5B2A5	Erysipelothrix_phage	26.2	1.8e-21
>prophage 76
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	971889	975530	2804489		Mycoplasma_phage(50.0%)	4	NA	NA
WP_000433547.1|971889_972984_-	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	44.3	1.8e-37
WP_001020625.1|972996_973536_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_160199728.1|973679_973955_-	UPF0223 family protein	NA	NA	NA	NA	NA
WP_000260117.1|974123_975530_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	29.1	1.2e-46
>prophage 77
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	980172	980724	2804489		Synechococcus_phage(100.0%)	1	NA	NA
WP_000957036.1|980172_980724_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.2	1.6e-13
>prophage 78
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	986841	991220	2804489		Bacillus_virus(50.0%)	5	NA	NA
WP_001289619.1|986841_987075_+	glutaredoxin family protein	NA	G3MBF0	Bacillus_virus	38.7	8.4e-09
WP_000040046.1|987310_989029_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_000437472.1|989031_989298_-	phosphocarrier protein HPr	NA	NA	NA	NA	NA
WP_000505969.1|989451_989994_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000685080.1|990047_991220_-	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	42.6	2.0e-74
>prophage 79
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	994336	1009097	2804489		Prochlorococcus_phage(22.22%)	14	NA	NA
WP_160200282.1|994336_995737_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	29.2	2.0e-12
WP_000273264.1|995729_996536_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_001101904.1|996801_998049_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_000709286.1|998070_999549_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	51.8	1.9e-77
WP_000238657.1|999563_1000130_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	39.6	8.0e-29
WP_000030827.1|1000132_1001161_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	1.2e-62
WP_000483713.1|1001153_1002638_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_160200283.1|1002616_1004806_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	4.6e-141
WP_000666803.1|1004798_1005470_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000848350.1|1005471_1005735_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000174048.1|1005734_1006439_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	41.2	4.0e-46
WP_001010404.1|1006442_1007567_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_001622461.1|1007553_1008036_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	8.0e-22
WP_000225844.1|1008236_1009097_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	38.8	2.0e-39
>prophage 80
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1019473	1023238	2804489		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001074512.1|1019473_1023238_+	mannosyl-glycoprotein endo-beta-N-acetylglucosamidase	NA	A0A1J0MFB0	Staphylococcus_phage	37.6	8.7e-55
>prophage 81
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1026889	1027891	2804489		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000676571.1|1026889_1027891_+	Glu-specific serine endopeptidase SspA	NA	A0A2H4PQP7	Staphylococcus_phage	31.7	1.1e-15
>prophage 82
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1036196	1039722	2804489		Enterococcus_phage(50.0%)	6	NA	NA
WP_001796516.1|1036196_1036487_+	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	38.0	3.4e-07
WP_001794249.1|1036550_1036682_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001081317.1|1036728_1037688_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000766009.1|1038179_1038536_+	DoxX family protein	NA	NA	NA	NA	NA
WP_001796515.1|1038702_1038993_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000571169.1|1039080_1039722_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.2	3.8e-19
>prophage 83
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1049862	1055073	2804489	protease	Pithovirus(33.33%)	3	NA	NA
WP_001796514.1|1049862_1052187_-|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.1e-11
WP_160200284.1|1052405_1053209_-	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	2.1e-30
WP_001049954.1|1053510_1055073_-	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	1.3e-36
>prophage 84
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1073999	1075808	2804489		Streptococcus_phage(100.0%)	1	NA	NA
WP_000082725.1|1073999_1075808_-	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.5	5.5e-47
>prophage 85
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1081622	1083592	2804489		Bacillus_virus(100.0%)	2	NA	NA
WP_000427779.1|1081622_1082603_-	dipeptide ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.1	2.7e-16
WP_001067039.1|1082605_1083592_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.0	1.8e-15
>prophage 86
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1087243	1089257	2804489		Organic_Lake_phycodnavirus(50.0%)	2	NA	NA
WP_001258350.1|1087243_1088185_-	ABC transporter ATP-binding protein	NA	F2Y1V6	Organic_Lake_phycodnavirus	26.9	2.1e-05
WP_000140054.1|1088174_1089257_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	2.9e-19
>prophage 87
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1097189	1099799	2804489		Agrobacterium_phage(100.0%)	1	NA	NA
WP_000353969.1|1097189_1099799_-	ATP-dependent chaperone ClpB	NA	A0A223W0B1	Agrobacterium_phage	34.3	5.5e-117
>prophage 88
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1107106	1110760	2804489		Bacillus_phage(100.0%)	1	NA	NA
WP_000154909.1|1107106_1110760_-	helicase-exonuclease AddAB subunit AddA	NA	A7KV33	Bacillus_phage	24.7	3.5e-24
>prophage 89
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1121515	1128619	2804489		Staphylococcus_phage(33.33%)	6	NA	NA
WP_000185324.1|1121515_1122445_+	glycerophosphodiester phosphodiesterase	NA	A0A220BYK6	Staphylococcus_phage	37.9	2.8e-39
WP_000138487.1|1122893_1124138_-	NAD-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
WP_000167314.1|1124246_1125437_-	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	29.7	1.3e-33
WP_000838022.1|1125744_1126872_-	NADH-dependent flavin oxidoreductase	NA	NA	NA	NA	NA
WP_001067294.1|1127232_1127610_-	S1 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_000035064.1|1128025_1128619_-	peptidyl-prolyl cis-trans isomerase	NA	A0A076FI46	Aureococcus_anophage	41.3	1.5e-25
>prophage 90
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1138553	1142181	2804489		Mycoplasma_phage(50.0%)	3	NA	NA
WP_001009695.1|1138553_1140029_-	cytosol aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	36.7	1.2e-47
WP_000046076.1|1140159_1141368_-	NADH dehydrogenase	NA	NA	NA	NA	NA
WP_001143497.1|1141821_1142181_-	iron-sulfur cluster assembly accessory protein	NA	A0A2H4N7M3	Lake_Baikal_phage	38.6	2.1e-14
>prophage 91
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1146225	1148894	2804489		Pseudomonas_phage(50.0%)	2	NA	NA
WP_000613541.1|1146225_1147440_-	PG:teichoic acid D-alanyltransferase DltB	NA	A0A125RNP0	Pseudomonas_phage	26.1	8.5e-20
WP_160200285.1|1147436_1148894_-	D-alanine--poly(phosphoribitol) ligase subunit DltA	NA	A0A2K9L3I8	Tupanvirus	28.5	5.2e-40
>prophage 92
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1162145	1165668	2804489		environmental_halophage(50.0%)	3	NA	NA
WP_160200286.1|1162145_1163387_-	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.5	1.8e-110
WP_000205572.1|1163501_1164809_-	Fe-S cluster assembly protein SufD	NA	NA	NA	NA	NA
WP_000168845.1|1164906_1165668_-	Fe-S cluster assembly ATPase SufC	NA	A0A1V0SE00	Indivirus	23.3	4.4e-06
>prophage 93
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1169152	1178311	2804489		Streptococcus_phage(40.0%)	13	NA	NA
WP_000571205.1|1169152_1170178_-	methionine ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.3	1.8e-26
WP_001065802.1|1170427_1170724_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001018963.1|1170716_1171103_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001796505.1|1171541_1172420_-	DUF1963 domain-containing protein	NA	NA	NA	NA	NA
WP_000290492.1|1172597_1172978_-	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_000589550.1|1173135_1173492_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	46.6	4.7e-19
WP_001147956.1|1173635_1173956_+	thioredoxin family protein	NA	A0A1X9I9P5	Staphylococcus_phage	35.1	9.1e-06
WP_000422908.1|1174105_1174645_-	nitroreductase	NA	NA	NA	NA	NA
WP_000150033.1|1174727_1175444_-	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	29.7	3.4e-16
WP_000974451.1|1175591_1176014_+	organic hydroperoxide resistance protein	NA	NA	NA	NA	NA
WP_000569884.1|1176412_1176907_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000255550.1|1177062_1177680_+	amino acid transporter	NA	NA	NA	NA	NA
WP_016187137.1|1177750_1178311_-	histidine phosphatase family protein	NA	A0A1X9IGJ2	Lactococcus_phage	40.9	3.8e-31
>prophage 94
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1181714	1182958	2804489		Lactococcus_phage(50.0%)	2	NA	NA
WP_001059082.1|1181714_1181915_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	70.8	1.4e-20
WP_001622483.1|1182271_1182958_-	thermonuclease family protein	NA	A0A1P8CWK6	Bacillus_phage	54.2	2.9e-33
>prophage 95
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1192255	1201012	2804489		Staphylococcus_phage(50.0%)	8	NA	NA
WP_001806213.1|1192255_1192984_+	DUF5067 domain-containing protein	NA	H9A0X8	Staphylococcus_phage	36.8	2.1e-18
WP_000999093.1|1193268_1193883_-	stage II sporulation protein M	NA	NA	NA	NA	NA
WP_029549295.1|1194849_1195314_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	99.4	3.3e-81
WP_001050026.1|1195335_1197708_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	38.7	7.3e-92
WP_001165966.1|1197741_1198482_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_000556760.1|1198610_1198844_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_000785252.1|1198910_1199369_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001121760.1|1199707_1201012_-	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	80.7	6.7e-196
>prophage 96
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1212055	1217927	2804489		Streptococcus_phage(40.0%)	5	NA	NA
WP_001049165.1|1212055_1212643_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	55.3	8.2e-53
WP_000006551.1|1213205_1214150_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	40.6	3.1e-54
WP_001248939.1|1214260_1215256_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	41.9	4.8e-53
WP_000369722.1|1215252_1216164_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	36.1	1.1e-08
WP_000134963.1|1216991_1217927_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	49.2	2.9e-84
>prophage 97
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1222087	1224916	2804489		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_000662699.1|1222087_1224916_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	57.7	0.0e+00
>prophage 98
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1228234	1229074	2804489		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_000749393.1|1228234_1229074_-	CHAP domain-containing protein	NA	A0A2H4J675	uncultured_Caudovirales_phage	42.2	3.5e-12
>prophage 99
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1235155	1240869	2804489		Streptococcus_phage(66.67%)	5	NA	NA
WP_160200288.1|1235155_1236238_-	DEAD/DEAH box helicase	NA	A0A1X9I5S6	Streptococcus_phage	34.9	1.3e-43
WP_000686346.1|1236602_1237469_-	DegV family protein	NA	NA	NA	NA	NA
WP_000192949.1|1237612_1238254_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	47.7	5.3e-37
WP_000258151.1|1238425_1239481_-	undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	NA	NA	NA	NA	NA
WP_000460988.1|1239798_1240869_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	33.5	1.3e-16
>prophage 100
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1250153	1273261	2804489		uncultured_Caudovirales_phage(35.71%)	18	NA	NA
WP_000616861.1|1250153_1250915_-	ATP-binding cassette domain-containing protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.6	2.7e-16
WP_001245581.1|1250911_1251868_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000876313.1|1251854_1252826_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	79.9	1.0e-140
WP_000562500.1|1253200_1254172_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	3.2e-171
WP_160199740.1|1254289_1256395_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.6	0.0e+00
WP_000692521.1|1256357_1256756_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_001068497.1|1257557_1258424_+	DMT family transporter	NA	NA	NA	NA	NA
WP_000930014.1|1258443_1258944_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_000193753.1|1259284_1260790_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.6e-58
WP_031785486.1|1260867_1260969_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000429016.1|1261059_1261977_+	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.4	2.1e-07
WP_000197263.1|1262664_1263213_-	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000663021.1|1263370_1264429_-	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	26.9	2.6e-20
WP_000606781.1|1264668_1266183_-	ABC transporter permease/substrate-binding protein	NA	NA	NA	NA	NA
WP_000589263.1|1266175_1267153_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.3	5.4e-25
WP_000983676.1|1267373_1269155_-	DNA helicase RecQ	NA	A0A2P1EM61	Moumouvirus	37.0	6.5e-77
WP_000525111.1|1269166_1271050_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	30.6	2.0e-55
WP_000098285.1|1271320_1273261_-	polyglycerol-phosphate lipoteichoic acid synthase LtaS	NA	W6LM83	Streptococcus_phage	39.5	1.3e-110
>prophage 101
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1276405	1286250	2804489		Pandoravirus(12.5%)	12	NA	NA
WP_001217805.1|1276405_1277557_-	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
WP_000604517.1|1277540_1278134_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.0	8.9e-39
WP_000446726.1|1278484_1279153_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	7.4e-66
WP_000941336.1|1279154_1279574_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_001062976.1|1279577_1280291_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000637683.1|1280389_1280974_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001093554.1|1281253_1281694_+	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_001037807.1|1282034_1282508_+	DoxX family protein	NA	NA	NA	NA	NA
WP_000149344.1|1282482_1283169_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000244415.1|1283168_1284224_+	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000702775.1|1284295_1285279_-	glycosyltransferase family 2 protein	NA	A0A192Y8W7	Salmonella_phage	43.0	7.3e-62
WP_000931231.1|1285410_1286250_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	42.3	1.9e-55
>prophage 102
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1297874	1299248	2804489		Powai_lake_megavirus(100.0%)	1	NA	NA
WP_000952028.1|1297874_1299248_-	deoxyribodipyrimidine photo-lyase	NA	A0A167RC11	Powai_lake_megavirus	33.8	2.3e-45
>prophage 103
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1304224	1310504	2804489		Bacillus_phage(33.33%)	6	NA	NA
WP_000857605.1|1304224_1305898_-	amino acid ABC transporter ATP-binding/permease protein	NA	W8CYL7	Bacillus_phage	23.2	3.4e-11
WP_000737145.1|1305894_1307526_-	ABC transporter ATP-binding protein/permease	NA	W5SAS9	Pithovirus	28.2	8.8e-12
WP_000469886.1|1307744_1308620_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_000358502.1|1308791_1309475_+	hypothetical protein	NA	NA	NA	NA	NA
WP_160200289.1|1309477_1309936_+	YaiI/YqxD family protein	NA	NA	NA	NA	NA
WP_000820900.1|1309937_1310504_+	TIGR00730 family Rossman fold protein	NA	A0A1G5S9X4	Enterococcus_phage	36.9	4.7e-21
>prophage 104
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1317518	1317992	2804489		Pandoravirus(100.0%)	1	NA	NA
WP_000844823.1|1317518_1317992_-	cupin	NA	A0A291AU44	Pandoravirus	38.2	3.2e-15
>prophage 105
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1323254	1324052	2804489		Bacillus_phage(100.0%)	1	NA	NA
WP_000731644.1|1323254_1324052_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A223LD43	Bacillus_phage	30.2	1.2e-06
>prophage 106
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1328776	1329538	2804489		Planktothrix_phage(100.0%)	1	NA	NA
WP_000153733.1|1328776_1329538_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.0	3.2e-33
>prophage 107
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1333917	1334961	2804489		Acanthamoeba_polyphaga_moumouvirus(100.0%)	1	NA	NA
WP_001030756.1|1333917_1334961_-	alpha/beta hydrolase	NA	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	28.0	4.4e-17
>prophage 108
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1341484	1342282	2804489		Planktothrix_phage(100.0%)	1	NA	NA
WP_001080809.1|1341484_1342282_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.7	1.1e-18
>prophage 109
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1345511	1349470	2804489		Bacillus_phage(33.33%)	3	NA	NA
WP_000817954.1|1345511_1347239_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	43.3	9.7e-110
WP_000793048.1|1347659_1348955_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	26.9	1.5e-14
WP_000832260.1|1349071_1349470_-	glycerol-3-phosphate cytidylyltransferase	NA	A0A222YWT0	Streptomyces_phage	39.9	3.2e-16
>prophage 110
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1356405	1357149	2804489		Indivirus(100.0%)	1	NA	NA
WP_000894464.1|1356405_1357149_+	metal ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	29.7	1.2e-11
>prophage 111
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1368233	1368794	2804489	integrase	Streptococcus_phage(100.0%)	1	1362387:1362401	1372381:1372395
1362387:1362401	attL	TTTTGATACCATTTC	NA	NA	NA	NA
WP_001044966.1|1368233_1368794_-|integrase	tyrosine-type recombinase/integrase	integrase	Q7Y4J2	Streptococcus_phage	31.3	1.3e-18
WP_001044966.1|1368233_1368794_-|integrase	tyrosine-type recombinase/integrase	integrase	Q7Y4J2	Streptococcus_phage	31.3	1.3e-18
1372381:1372395	attR	TTTTGATACCATTTC	NA	NA	NA	NA
>prophage 112
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1382105	1385459	2804489		Tupanvirus(50.0%)	3	NA	NA
WP_001200749.1|1382105_1383116_-	alcohol dehydrogenase AdhP	NA	A0A2K9L339	Tupanvirus	27.6	1.5e-33
WP_001796423.1|1383614_1384136_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000180234.1|1384163_1385459_-	HD domain-containing protein	NA	E3T4P8	Cafeteria_roenbergensis_virus	27.9	1.2e-24
>prophage 113
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1393646	1394969	2804489		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_000860583.1|1393646_1394969_+	FAD-containing oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	47.3	9.7e-110
>prophage 114
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1406272	1406929	2804489		Elephant_endotheliotropic_herpesvirus(100.0%)	1	NA	NA
WP_000455258.1|1406272_1406929_-	uracil-DNA glycosylase	NA	U5U4C1	Elephant_endotheliotropic_herpesvirus	46.4	6.4e-46
>prophage 115
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1410596	1413917	2804489		Staphylococcus_phage(50.0%)	2	NA	NA
WP_160200292.1|1410596_1411973_-	AMP-binding protein	NA	A0A2H4PQM9	Staphylococcus_phage	24.7	3.5e-22
WP_000347068.1|1412516_1413917_-	MFS transporter	NA	Q6JIH2	Burkholderia_virus	32.8	2.1e-54
>prophage 116
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1437285	1437948	2804489		Enterococcus_phage(100.0%)	1	NA	NA
WP_001067257.1|1437285_1437948_+	deoxynucleoside kinase	NA	A0A0M3UL55	Enterococcus_phage	36.9	3.1e-24
>prophage 117
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1444494	1445682	2804489		Emiliania_huxleyi_virus(100.0%)	1	NA	NA
WP_000250816.1|1444494_1445682_-	glycine C-acetyltransferase	NA	V5LQ39	Emiliania_huxleyi_virus	30.8	8.8e-46
>prophage 118
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1448712	1459666	2804489		Streptococcus_phage(33.33%)	6	NA	NA
WP_000090315.1|1448712_1450794_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	28.3	2.7e-66
WP_001137495.1|1450916_1451387_-	30S ribosomal protein S7	NA	NA	NA	NA	NA
WP_001142337.1|1451452_1451866_-	30S ribosomal protein S12	NA	NA	NA	NA	NA
WP_000031892.1|1451963_1452218_-	50S ribosomal protein L7ae-like protein	NA	NA	NA	NA	NA
WP_001827373.1|1452354_1455951_-	DNA-directed RNA polymerase subunit beta'	NA	R4TQM7	Phaeocystis_globosa_virus	24.6	1.9e-67
WP_000918680.1|1456114_1459666_-	DNA-directed RNA polymerase subunit beta	NA	A0A1B1ISA9	uncultured_Mediterranean_phage	24.3	2.1e-50
>prophage 119
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1463349	1468132	2804489	tRNA	Bacillus_virus(50.0%)	8	NA	NA
WP_001288302.1|1463349_1463898_-	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	33.5	8.6e-12
WP_001074473.1|1463910_1464093_-	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_001788193.1|1464148_1464292_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_000872878.1|1464406_1464976_-	RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_000664731.1|1465056_1465581_-	NYN domain-containing protein	NA	NA	NA	NA	NA
WP_000390332.1|1465580_1466327_-	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
WP_000370179.1|1466334_1466739_-	Mini-ribonuclease 3	NA	NA	NA	NA	NA
WP_000631980.1|1466731_1468132_-|tRNA	cysteine--tRNA ligase	tRNA	A0A1V0SAQ2	Catovirus	32.0	3.2e-55
>prophage 120
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1474143	1476600	2804489	protease	Escherichia_phage(100.0%)	1	NA	NA
WP_000897128.1|1474143_1476600_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A1C3S747	Escherichia_phage	41.3	4.7e-134
>prophage 121
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1495791	1506064	2804489	protease,tRNA	Catovirus(16.67%)	10	NA	NA
WP_001288202.1|1495791_1497279_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	41.1	2.1e-92
WP_031785444.1|1497331_1497424_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000613718.1|1497817_1498294_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_001154303.1|1498290_1498656_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_000167941.1|1498633_1499437_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	30.8	5.1e-21
WP_000057594.1|1499652_1500585_-	cysteine synthase A	NA	A0A1X9I5K7	Streptococcus_phage	65.7	3.7e-108
WP_000148605.1|1500763_1501645_-	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA	NA
WP_001167886.1|1501873_1503967_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	E5EQ50	Micromonas_sp._RCC1109_virus	42.7	4.0e-110
WP_000551283.1|1504224_1504764_-	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	29.8	6.5e-12
WP_001176731.1|1504768_1506064_-|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	A0A1V0SI91	Klosneuvirus	24.2	1.4e-12
>prophage 122
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1515320	1517785	2804489		Hokovirus(50.0%)	2	NA	NA
WP_000933774.1|1515320_1516286_-	ribose-phosphate diphosphokinase	NA	A0A1V0SHF7	Hokovirus	35.4	6.1e-45
WP_001252527.1|1516432_1517785_-	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A2K9L821	Tupanvirus	30.4	8.3e-24
>prophage 123
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1523671	1526769	2804489	tRNA	Hokovirus(50.0%)	2	NA	NA
WP_001051142.1|1523671_1525645_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SEZ7	Hokovirus	32.6	3.2e-93
WP_000279924.1|1525929_1526769_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	45.4	1.3e-56
>prophage 124
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1530675	1531293	2804489		Streptococcus_phage(100.0%)	1	NA	NA
WP_001272125.1|1530675_1531293_-	dTMP kinase	NA	M1PSC7	Streptococcus_phage	48.3	7.1e-47
>prophage 125
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1540404	1542102	2804489		Streptococcus_virus(100.0%)	1	NA	NA
WP_001109055.1|1540404_1542102_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	42.1	8.7e-55
>prophage 126
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1558751	1564976	2804489		Lactobacillus_phage(33.33%)	6	NA	NA
WP_001170274.1|1558751_1559756_-	autolysin/adhesin Aaa	NA	A0A0A7NU10	Lactobacillus_phage	41.1	1.4e-23
WP_000825537.1|1560089_1560932_-	dipeptide ABC transporter glycylmethionine-binding lipoprotein	NA	NA	NA	NA	NA
WP_000467994.1|1560968_1561628_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000569277.1|1561631_1562657_-	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.3e-32
WP_001036647.1|1562935_1564078_-	bifunctional cystathionine gamma-lyase/homocysteine desulfhydrase	NA	NA	NA	NA	NA
WP_000634103.1|1564070_1564976_-	cysteine synthase family protein	NA	A0A1W6JIM2	Lactococcus_phage	39.4	3.2e-48
>prophage 127
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1587753	1590562	2804489		Staphylococcus_phage(100.0%)	2	NA	NA
WP_160200299.1|1587753_1589013_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	37.1	2.2e-47
WP_000028601.1|1589005_1590562_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	97.7	1.1e-282
>prophage 128
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1600900	1602634	2804489	transposase	Paenibacillus_phage(50.0%)	2	NA	NA
WP_000159788.1|1600900_1601227_+|transposase	transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	50.6	2.5e-11
WP_000041875.1|1601929_1602634_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	U5U4R0	Staphylococcus_phage	37.6	1.5e-29
>prophage 129
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1608612	1611645	2804489		Hokovirus(50.0%)	2	NA	NA
WP_000424959.1|1608612_1610154_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.2	9.5e-24
WP_000264071.1|1610178_1611645_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	5.2e-96
>prophage 130
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1620601	1622125	2804489		Enterococcus_phage(100.0%)	1	NA	NA
WP_000930500.1|1620601_1622125_+	alkyl hydroperoxide reductase subunit F	NA	A0A249XZT7	Enterococcus_phage	33.6	1.4e-40
>prophage 131
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1628608	1637043	2804489		Staphylococcus_phage(60.0%)	10	NA	NA
WP_000237578.1|1628608_1628746_+	hypothetical protein	NA	Q4ZE80	Staphylococcus_phage	64.4	9.8e-10
WP_000897044.1|1630420_1630663_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_000934799.1|1630714_1631218_-	single-stranded DNA-binding protein	NA	A0A1W6JPL9	Staphylococcus_phage	74.7	1.2e-60
WP_001261460.1|1631238_1631535_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_001052483.1|1631778_1631970_+	hypothetical protein	NA	U3PCX8	Staphylococcus_phage	80.0	4.9e-23
WP_001218729.1|1632055_1633153_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_000157348.1|1633164_1633368_-	DUF951 domain-containing protein	NA	NA	NA	NA	NA
WP_000373079.1|1633397_1634279_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_001621659.1|1634432_1635278_-	ParB/RepB/Spo0J family partition protein	NA	A0A1C9EHW0	Gordonia_phage	34.4	1.6e-12
WP_000655695.1|1635939_1637043_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	A0A0B5JD48	Pandoravirus	28.1	1.1e-10
>prophage 132
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1646963	1647806	2804489		Anomala_cuprea_entomopoxvirus(100.0%)	1	NA	NA
WP_000209476.1|1646963_1647806_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	27.7	3.8e-11
>prophage 133
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1667585	1670320	2804489		Bodo_saltans_virus(50.0%)	3	NA	NA
WP_000280808.1|1667585_1668608_-	lipoate--protein ligase	NA	A0A2H4UVX5	Bodo_saltans_virus	30.4	6.7e-10
WP_001191950.1|1668585_1669530_-	NAD-dependent deacetylase	NA	NA	NA	NA	NA
WP_000854324.1|1669519_1670320_-	protein-ADP-ribose hydrolase	NA	A0A2K9L8X2	Tupanvirus	41.9	6.8e-42
>prophage 134
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1688560	1689238	2804489		Planktothrix_phage(100.0%)	1	NA	NA
WP_000911015.1|1688560_1689238_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.1	1.0e-30
>prophage 135
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1697248	1713805	2804489	transposase	Streptococcus_phage(71.43%)	21	NA	NA
WP_001105991.1|1697248_1697923_+|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9SKD3	Staphylococcus_phage	99.6	6.8e-128
WP_049287895.1|1698859_1699177_-	hypothetical protein	NA	A0A1W6JN36	Lactococcus_phage	79.4	4.6e-26
WP_075100294.1|1699618_1700482_-	toxin zeta	NA	NA	NA	NA	NA
WP_002331065.1|1700483_1700756_-	antitoxin	NA	A0A1X9I6E5	Streptococcus_phage	96.7	5.4e-07
WP_000527318.1|1700772_1700982_-	peptide-binding protein	NA	A0A1X9I6D5	Streptococcus_phage	98.6	1.4e-31
WP_002334978.1|1701080_1701977_-	ParA family protein	NA	A0A1X9I765	Streptococcus_phage	97.2	9.0e-152
WP_157135214.1|1702239_1702407_-	WYL domain-containing protein	NA	E4ZFP5	Streptococcus_phage	98.2	3.0e-24
WP_001096887.1|1703087_1703882_-	aminoglycoside O-phosphotransferase APH(3')-IIIa	NA	E4ZFP6	Streptococcus_phage	100.0	2.3e-154
WP_000627289.1|1703974_1704505_-	streptothricin N-acetyltransferase Sat4	NA	A0A1B0RXL7	Streptococcus_phage	97.8	1.3e-89
WP_160199765.1|1704501_1705410_-	aminoglycoside 6-adenylyltransferase	NA	E4ZFP8	Streptococcus_phage	99.7	8.2e-177
WP_000662263.1|1705442_1706177_-	class I SAM-dependent methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	100.0	1.5e-141
WP_000228166.1|1706157_1707027_-	hypothetical protein	NA	A0A1X9I6C9	Streptococcus_phage	95.8	4.3e-159
WP_000084169.1|1707129_1707336_-	single-stranded DNA-binding protein	NA	NA	NA	NA	NA
WP_001070743.1|1707396_1708047_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_160200303.1|1708056_1709181_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000573642.1|1709182_1709887_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	35.0	1.3e-25
WP_011251346.1|1710137_1711031_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001106019.1|1711074_1711749_+|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	100.0	8.1e-129
WP_000072391.1|1712010_1712985_-	DUF4062 domain-containing protein	NA	NA	NA	NA	NA
WP_001791613.1|1713196_1713289_-	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_000119691.1|1713457_1713805_-	helix-turn-helix transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	36.8	6.4e-13
>prophage 136
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1721749	1722376	2804489		Bacillus_virus(100.0%)	1	NA	NA
WP_000593103.1|1721749_1722376_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.7	8.0e-22
>prophage 137
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1725418	1731732	2804489	transposase	Clostridium_phage(25.0%)	8	NA	NA
WP_001566953.1|1725418_1726027_-	recombinase family protein	NA	M9Q1K0	Clostridium_phage	33.5	3.4e-17
WP_000733289.1|1726395_1727241_-	penicillin-hydrolyzing class A beta-lactamase BlaZ	NA	A0A1B0VBP7	Salmonella_phage	34.4	1.2e-31
WP_001096385.1|1727347_1729105_+	beta-lactam sensor/signal transducer BlaR1	NA	NA	NA	NA	NA
WP_001284653.1|1729094_1729475_+	penicillinase repressor BlaI	NA	NA	NA	NA	NA
WP_000690637.1|1729738_1730317_+	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.7	4.9e-42
WP_001037130.1|1730539_1730725_-	hypothetical protein	NA	NA	NA	NA	NA
WP_032603369.1|1730717_1730978_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001105991.1|1731057_1731732_+|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9SKD3	Staphylococcus_phage	99.6	6.8e-128
>prophage 138
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1742104	1746544	2804489		Mycobacterium_phage(100.0%)	1	NA	NA
WP_000549268.1|1742104_1746544_-	type VII secretion protein EssC	NA	V5UPA0	Mycobacterium_phage	24.3	8.2e-28
>prophage 139
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1758506	1760168	2804489		Amsacta_moorei_entomopoxvirus(50.0%)	2	NA	NA
WP_000570084.1|1758506_1759166_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	36.6	3.4e-23
WP_000736796.1|1759217_1760168_-	glycine-glycine endopeptidase LytM	NA	V5R8R0	Arthrobacter_phage	42.7	2.6e-16
>prophage 140
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1768690	1770127	2804489		Pandoravirus(100.0%)	1	NA	NA
WP_000164000.1|1768690_1770127_-	6-phospho-beta-glucosidase	NA	A0A0B5JD41	Pandoravirus	25.8	4.8e-30
>prophage 141
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1773885	1778425	2804489		Enterobacteria_phage(50.0%)	3	NA	NA
WP_000925389.1|1773885_1775625_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	31.5	2.6e-62
WP_160200309.1|1775885_1776560_-	iron-sulfur cluster repair di-iron protein ScdA	NA	NA	NA	NA	NA
WP_000975339.1|1776703_1778425_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	37.4	2.7e-11
>prophage 142
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1787752	1788796	2804489		Prochlorococcus_phage(100.0%)	1	NA	NA
WP_000645598.1|1787752_1788796_-	galactitol-1-phosphate 5-dehydrogenase	NA	A0A0K0KVL7	Prochlorococcus_phage	27.7	2.7e-14
>prophage 143
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1796012	1797542	2804489		Vibrio_phage(100.0%)	1	NA	NA
WP_160199771.1|1796012_1797542_+	PTS transporter subunit EIIC	NA	A0A2I7SAJ6	Vibrio_phage	49.4	1.1e-11
>prophage 144
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1810064	1811570	2804489		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001008393.1|1810064_1811570_+	acyl--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	26.1	3.5e-39
>prophage 145
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1822717	1828073	2804489		Tetraselmis_virus(50.0%)	3	NA	NA
WP_000894660.1|1822717_1824967_-	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	45.1	1.7e-186
WP_160199778.1|1825554_1826520_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_000127975.1|1826516_1828073_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	27.2	5.8e-13
>prophage 146
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1838475	1840537	2804489		Planktothrix_phage(50.0%)	2	NA	NA
WP_000818909.1|1838475_1839573_-	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	35.6	1.4e-24
WP_000166909.1|1839958_1840537_-	M23 family metallopeptidase	NA	A0A2K9VGT1	Pontimonas_phage	39.4	1.3e-13
>prophage 147
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1849088	1850681	2804489		Bacillus_virus(100.0%)	1	NA	NA
WP_029549269.1|1849088_1850681_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.6	2.9e-15
>prophage 148
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1867275	1868460	2804489		Klosneuvirus(100.0%)	1	NA	NA
WP_160199784.1|1867275_1868460_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	30.1	3.1e-35
>prophage 149
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1873318	1880494	2804489		Tupanvirus(100.0%)	1	NA	NA
WP_001656945.1|1873318_1880494_-	non-ribosomal peptide synthetase	NA	A0A2K9KZV5	Tupanvirus	29.9	1.3e-67
>prophage 150
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1885341	1888340	2804489		Bacillus_virus(50.0%)	4	NA	NA
WP_000590842.1|1885341_1886082_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	41.1	1.7e-39
WP_000171926.1|1886423_1886936_-	DUF4242 domain-containing protein	NA	NA	NA	NA	NA
WP_000356967.1|1887115_1887319_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001013475.1|1887380_1888340_-	cation transporter	NA	A0A1V0SED0	Indivirus	34.2	1.2e-11
>prophage 151
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1891680	1894165	2804489		Catovirus(50.0%)	2	NA	NA
WP_000723456.1|1891680_1892826_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	26.1	4.1e-24
WP_000779511.1|1892902_1894165_-	nucleotide sugar dehydrogenase	NA	A0A127AXI2	Bacillus_phage	25.5	1.2e-21
>prophage 152
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1901183	1907748	2804489		Catovirus(50.0%)	6	NA	NA
WP_000413171.1|1901183_1902308_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SJE0	Klosneuvirus	59.6	6.7e-128
WP_160199786.1|1902311_1903421_-	capsular polysaccharide biosynthesis protein CapF	NA	NA	NA	NA	NA
WP_000459062.1|1903433_1904462_-	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	35.3	1.1e-41
WP_160200311.1|1904451_1906275_-	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	29.9	1.4e-29
WP_000565293.1|1906294_1907059_-	tyrosine-protein phosphatase	NA	NA	NA	NA	NA
WP_000037324.1|1907061_1907748_-	tyrosine-protein kinase	NA	A0A1X9I5D6	Streptococcus_phage	36.1	8.2e-28
>prophage 153
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1916579	1917353	2804489		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000078092.1|1916579_1917353_+	phosphonate ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.1	3.8e-13
>prophage 154
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1925388	1925988	2804489		Bacillus_thuringiensis_phage(100.0%)	1	NA	NA
WP_000874681.1|1925388_1925988_-	Superoxide dismutase [Mn/Fe] 2	NA	Q56AR7	Bacillus_thuringiensis_phage	50.2	7.6e-54
>prophage 155
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1930936	1931917	2804489		Catovirus(100.0%)	1	NA	NA
WP_001796610.1|1930936_1931917_-	NAD-dependent epimerase/dehydratase family protein	NA	A0A1V0SAI6	Catovirus	37.4	2.7e-48
>prophage 156
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1935769	1936972	2804489		Tupanvirus(100.0%)	1	NA	NA
WP_001223695.1|1935769_1936972_-	staphyloferrin B biosynthesis decarboxylase SbnH	NA	A0A2K9L4I2	Tupanvirus	21.1	6.7e-09
>prophage 157
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1945238	1949448	2804489		Lactococcus_phage(50.0%)	4	NA	NA
WP_000570806.1|1945238_1946219_-	2,3-diaminopropionate biosynthesis protein SbnA	NA	A0A1W6JHY1	Lactococcus_phage	35.4	1.6e-40
WP_001045124.1|1946449_1947442_+	staphyloferrin B ABC transporter substrate-binding protein SirA	NA	NA	NA	NA	NA
WP_000924996.1|1947457_1948453_+	staphyloferrin B ABC transporter permease subunit SirB	NA	NA	NA	NA	NA
WP_000136627.1|1948449_1949448_+	staphyloferrin B ABC transporter permease subunit SirC	NA	A0A2H4IY97	uncultured_Caudovirales_phage	26.9	2.0e-14
>prophage 158
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	1998545	2000423	2804489		Mycobacterium_phage(100.0%)	1	NA	NA
WP_000065395.1|1998545_2000423_-	restriction endonuclease subunit M	NA	A0A142K7G3	Mycobacterium_phage	27.2	1.2e-33
>prophage 159
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2009544	2012544	2804489		Bacillus_phage(100.0%)	2	NA	NA
WP_000815640.1|2009544_2010894_+	recombinase family protein	NA	Q9T200	Bacillus_phage	24.8	1.4e-18
WP_001186608.1|2010915_2012544_+	recombinase family protein	NA	A0A0S2SXR4	Bacillus_phage	31.4	5.4e-46
>prophage 160
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2021843	2022518	2804489	transposase	Staphylococcus_phage(100.0%)	1	NA	NA
WP_001106058.1|2021843_2022518_+|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9SKD3	Staphylococcus_phage	99.1	2.6e-127
>prophage 161
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2028156	2038152	2804489		Bacillus_phage(40.0%)	7	NA	NA
WP_160200313.1|2028156_2028957_-	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	35.4	6.6e-37
WP_001104170.1|2029344_2030133_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001060151.1|2030133_2031468_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000871607.1|2031460_2033287_-	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	31.3	1.6e-30
WP_000101976.1|2033299_2034001_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.2	3.5e-42
WP_000095327.1|2035190_2036474_-	adenylosuccinate synthase	NA	L7Y4J5	Megavirus	34.6	2.3e-68
WP_000375647.1|2036751_2038152_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	48.1	5.4e-111
>prophage 162
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2044838	2053877	2804489	tRNA	Bacillus_virus(50.0%)	5	NA	NA
WP_000884335.1|2044838_2046125_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	51.2	2.7e-88
WP_000177475.1|2046502_2048017_-	histidine ammonia-lyase	NA	A0A1V0S940	Catovirus	38.0	2.6e-90
WP_000449218.1|2048342_2049155_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_160200314.1|2049242_2051906_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	35.9	1.0e-118
WP_000255583.1|2051942_2053877_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	44.9	4.4e-143
>prophage 163
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2063965	2067094	2804489		Faecalibacterium_phage(33.33%)	5	NA	NA
WP_000742837.1|2063965_2064805_+	nucleoid occlusion protein	NA	A0A2K9V477	Faecalibacterium_phage	23.8	2.2e-06
WP_000491382.1|2065121_2065475_+	DUF3147 family protein	NA	NA	NA	NA	NA
WP_000779134.1|2065542_2065938_+	DUF3147 family protein	NA	NA	NA	NA	NA
WP_001054109.1|2066197_2066767_+	helix-turn-helix transcriptional regulator	NA	D2XQ11	Bacillus_virus	33.3	6.2e-05
WP_001059079.1|2066893_2067094_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	69.8	3.4e-19
>prophage 164
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2070407	2071166	2804489		Planktothrix_phage(100.0%)	1	NA	NA
WP_000154162.1|2070407_2071166_-	peptide resistance ABC transporter ATP-binding subunit VraD	NA	G9BWD6	Planktothrix_phage	39.5	9.0e-36
>prophage 165
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2090236	2091250	2804489		Faustovirus(100.0%)	1	NA	NA
WP_000639196.1|2090236_2091250_+	histidinol-phosphate aminotransferase family protein	NA	A0A1X7QHI1	Faustovirus	21.9	1.4e-07
>prophage 166
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2103645	2104338	2804489		Streptococcus_phage(100.0%)	1	NA	NA
WP_000185857.1|2103645_2104338_+	polysaccharide biosynthesis tyrosine autokinase	NA	A0A1X9I5D6	Streptococcus_phage	37.6	1.7e-28
>prophage 167
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2133690	2135550	2804489		Enterococcus_phage(100.0%)	1	NA	NA
WP_160200318.1|2133690_2135550_-	amidase domain-containing protein	NA	A0A249Y0X5	Enterococcus_phage	37.3	1.3e-14
>prophage 168
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2162592	2163348	2804489		Planktothrix_phage(100.0%)	1	NA	NA
WP_000923765.1|2162592_2163348_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	1.8e-31
>prophage 169
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2166784	2167282	2804489		Canarypox_virus(100.0%)	1	NA	NA
WP_001065267.1|2166784_2167282_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	33.1	2.4e-21
>prophage 170
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2172317	2174701	2804489		Enterococcus_phage(100.0%)	2	NA	NA
WP_001071717.1|2172317_2174168_+	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	64.3	1.2e-235
WP_000173331.1|2174164_2174701_+	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A288TZV3	Enterococcus_phage	48.0	3.9e-41
>prophage 171
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2179577	2189689	2804489	holin	Klosneuvirus(50.0%)	9	NA	NA
WP_000038850.1|2179577_2181287_+|holin	choline dehydrogenase	holin	A0A1V0SI18	Klosneuvirus	32.3	2.9e-58
WP_000011688.1|2181564_2181777_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001028779.1|2182056_2182500_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_001172328.1|2182693_2184289_+	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	37.0	6.9e-78
WP_001796575.1|2184351_2184681_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001130051.1|2184976_2186473_+	malate dehydrogenase (quinone)	NA	NA	NA	NA	NA
WP_001031407.1|2186668_2187559_-	fructose bisphosphate aldolase	NA	A0A0K0KVJ8	Prochlorococcus_phage	29.2	1.2e-07
WP_001237623.1|2187681_2188098_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160199803.1|2188351_2189689_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	27.7	8.5e-21
>prophage 172
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2217861	2222743	2804489		Staphylococcus_phage(66.67%)	4	NA	NA
WP_000751266.1|2217861_2218563_+	lytic transglycosylase IsaA	NA	Q4Z8Z7	Staphylococcus_phage	46.4	3.1e-38
WP_000996740.1|2218838_2219327_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000379831.1|2219832_2221644_+	acetyltransferase	NA	A0A1R3Y5Q6	Salmonella_virus	31.5	1.7e-35
WP_000725216.1|2222005_2222743_+	CHAP domain-containing protein	NA	A0A2R3ZXQ4	Staphylococcus_phage	41.7	6.1e-05
>prophage 173
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2230048	2234308	2804489		Acanthocystis_turfacea_Chlorella_virus(50.0%)	3	NA	NA
WP_000161365.1|2230048_2231047_+	D-lactate dehydrogenase	NA	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	30.2	3.5e-35
WP_000076662.1|2231136_2231343_-	copper chaperone CopZ	NA	NA	NA	NA	NA
WP_000024132.1|2231899_2234308_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	40.7	4.9e-128
>prophage 174
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2243551	2246544	2804489	protease	Enterobacteria_phage(50.0%)	2	NA	NA
WP_029549251.1|2243551_2245660_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	37.6	1.2e-117
WP_000262599.1|2246022_2246544_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	42.3	2.4e-27
>prophage 175
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2252969	2259352	2804489		Yellowstone_lake_phycodnavirus(33.33%)	5	NA	NA
WP_001062662.1|2252969_2254709_+	pyruvate oxidase	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	24.1	6.0e-35
WP_000473692.1|2255008_2257075_+	PTS glucoside EIICBA component	NA	A0A2I7SAJ6	Vibrio_phage	43.3	8.3e-07
WP_000206034.1|2257454_2257865_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_000240665.1|2257906_2258251_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001228154.1|2258383_2259352_+	alpha/beta hydrolase	NA	A0A167RJ59	Powai_lake_megavirus	26.9	1.2e-11
>prophage 176
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2268647	2269640	2804489		Acanthocystis_turfacea_Chlorella_virus(100.0%)	1	NA	NA
WP_000161536.1|2268647_2269640_-	D-lactate dehydrogenase	NA	M1HYB0	Acanthocystis_turfacea_Chlorella_virus	31.5	1.1e-36
>prophage 177
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2279054	2279750	2804489		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000382895.1|2279054_2279750_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	38.0	8.8e-38
>prophage 178
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2298915	2306102	2804489		Bacillus_phage(66.67%)	6	NA	NA
WP_000721337.1|2298915_2299782_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	52.9	3.4e-79
WP_000217713.1|2299908_2300217_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000678763.1|2300356_2300623_-	hypothetical protein	NA	NA	NA	NA	NA
WP_072468810.1|2300906_2302715_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	37.7	2.4e-95
WP_000755944.1|2302846_2303239_+	(deoxy)nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_160199808.1|2303240_2306102_+	DUF3427 domain-containing protein	NA	Q5YA94	Bacillus_phage	27.9	4.0e-28
>prophage 179
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2313933	2314629	2804489		Bacillus_phage(100.0%)	1	NA	NA
WP_000217460.1|2313933_2314629_+	SDR family oxidoreductase	NA	W8CYX9	Bacillus_phage	36.5	6.6e-09
>prophage 180
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2320066	2320885	2804489		Acanthamoeba_polyphaga_moumouvirus(100.0%)	1	NA	NA
WP_000824951.1|2320066_2320885_+	SDR family oxidoreductase	NA	L7RG25	Acanthamoeba_polyphaga_moumouvirus	29.5	3.2e-10
>prophage 181
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2328823	2330381	2804489		Planktothrix_phage(50.0%)	2	NA	NA
WP_000173856.1|2328823_2329639_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.8	4.7e-14
WP_000590515.1|2329631_2330381_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	8.1e-21
>prophage 182
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2336613	2341040	2804489		Bacillus_virus(50.0%)	4	NA	NA
WP_000923514.1|2336613_2337276_+	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	31.0	2.7e-20
WP_000072159.1|2337268_2338045_+	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA	NA
WP_000026186.1|2338438_2339626_+	MFS transporter	NA	NA	NA	NA	NA
WP_000700906.1|2339687_2341040_-	carboxylesterase/lipase family protein	NA	A0A0B5J865	Pandoravirus	35.8	6.6e-13
>prophage 183
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2344675	2345902	2804489		Mycoplasma_phage(100.0%)	1	NA	NA
WP_000948985.1|2344675_2345902_+	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	39.6	8.6e-20
>prophage 184
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2364273	2370404	2804489		Bacillus_phage(66.67%)	6	NA	NA
WP_001176860.1|2364273_2365416_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	43.9	6.9e-56
WP_000779354.1|2365683_2366070_+	GtrA family protein	NA	NA	NA	NA	NA
WP_000482647.1|2366203_2366311_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_000301894.1|2366337_2366505_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001064831.1|2366882_2368622_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	23.9	8.7e-34
WP_000488492.1|2368670_2370404_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.1e-32
>prophage 185
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2373865	2379644	2804489		Staphylococcus_phage(75.0%)	6	NA	NA
WP_000971558.1|2373865_2374981_+	pyridoxal phosphate-dependent aminotransferase family protein	NA	V5LQ39	Emiliania_huxleyi_virus	25.0	1.2e-20
WP_000286884.1|2374991_2375684_+	6-carboxyhexanoate--CoA ligase	NA	NA	NA	NA	NA
WP_000200952.1|2375694_2376162_+	QueT transporter family protein	NA	NA	NA	NA	NA
WP_001056918.1|2376220_2377198_-	bi-component gamma-hemolysin HlgAB/HlgCB subunit B	NA	A0A2H4PQH7	Staphylococcus_phage	76.2	1.4e-142
WP_000916696.1|2377199_2378147_-	bi-component gamma-hemolysin HlgCB subunit C	NA	A0A2I6PER8	Staphylococcus_phage	78.7	4.0e-142
WP_000594516.1|2378714_2379644_-	bi-component gamma-hemolysin HlgAB subunit A	NA	A0A2H4PQI5	Staphylococcus_phage	71.4	1.5e-120
>prophage 186
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2387457	2388189	2804489		Bacillus_virus(100.0%)	1	NA	NA
WP_000615468.1|2387457_2388189_+	amino acid ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.3	3.4e-24
>prophage 187
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2404030	2405590	2804489		Escherichia_phage(100.0%)	1	NA	NA
WP_000692645.1|2404030_2405590_+	nitrate reductase subunit beta	NA	A0A077SL61	Escherichia_phage	46.8	4.4e-21
>prophage 188
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2438260	2444821	2804489		Staphylococcus_phage(25.0%)	8	NA	NA
WP_000340143.1|2438260_2438989_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.2	1.5e-27
WP_000372850.1|2439122_2439686_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_160199817.1|2439862_2440318_-	DUF3021 domain-containing protein	NA	NA	NA	NA	NA
WP_000977035.1|2440314_2440758_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000477342.1|2440924_2442298_-	heme sensor histidine kinase HssS	NA	A0A1V0SGX0	Hokovirus	29.3	6.7e-13
WP_000249501.1|2442290_2442965_-	DNA-binding heme response regulator HssR	NA	W8CYM9	Bacillus_phage	45.6	1.2e-52
WP_000761401.1|2443100_2444156_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001229907.1|2444155_2444821_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.8	7.2e-37
>prophage 189
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2448559	2449768	2804489		Salmonella_phage(100.0%)	1	NA	NA
WP_000999131.1|2448559_2449768_+	multidrug effflux MFS transporter	NA	S4TR35	Salmonella_phage	26.3	3.9e-33
>prophage 190
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2461865	2462765	2804489		Brazilian_cedratvirus(100.0%)	1	NA	NA
WP_000524843.1|2461865_2462765_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	28.2	4.7e-15
>prophage 191
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2475571	2476453	2804489		Diadromus_pulchellus_ascovirus(100.0%)	1	NA	NA
WP_160200326.1|2475571_2476453_+	SDR family oxidoreductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	45.9	9.4e-61
>prophage 192
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2484333	2484969	2804489		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_000285454.1|2484333_2484969_+	HAD family hydrolase	NA	A7J6N1	Paramecium_bursaria_Chlorella_virus	27.1	4.2e-10
>prophage 193
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2498718	2503282	2804489		Staphylococcus_phage(50.0%)	4	NA	NA
WP_072468848.1|2498718_2499357_+	autolysin	NA	A0A1W6JQU5	Staphylococcus_phage	48.1	2.6e-36
WP_160200327.1|2500249_2501374_+	NAD(P)-binding protein	NA	A0A2K9L3K5	Tupanvirus	22.5	6.1e-12
WP_000417008.1|2501465_2502419_-	2-hydroxyacid dehydrogenase	NA	A0A1V0SBV6	Catovirus	29.2	5.8e-32
WP_000733941.1|2502781_2503282_-	CHAP domain-containing protein	NA	A0A2R3ZXQ4	Staphylococcus_phage	39.3	2.0e-07
>prophage 194
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2507202	2508012	2804489		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000717388.1|2507202_2508012_-	CHAP domain-containing protein	NA	A0A2R3ZXQ4	Staphylococcus_phage	41.3	9.4e-07
>prophage 195
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2526989	2527595	2804489		Pithovirus(100.0%)	1	NA	NA
WP_000913006.1|2526989_2527595_+	ATP-binding cassette domain-containing protein	NA	W5SAS9	Pithovirus	30.6	3.8e-13
>prophage 196
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2539801	2542969	2804489		Leptospira_phage(100.0%)	1	NA	NA
WP_000592293.1|2539801_2542969_+	efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.8	6.2e-62
>prophage 197
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2566667	2568334	2804489		Anomala_cuprea_entomopoxvirus(50.0%)	2	NA	NA
WP_000389669.1|2566667_2567477_+	energy-coupling factor transporter ATPase	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	29.5	4.3e-20
WP_000027572.1|2567473_2568334_+	energy-coupling factor transporter ATPase	NA	A0A2H4PQG7	Staphylococcus_phage	25.7	1.1e-10
>prophage 198
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2571375	2576221	2804489		Mycobacterium_phage(50.0%)	4	NA	NA
WP_000204279.1|2571375_2572812_+	MarR family transcriptional regulator	NA	A0A088F7M4	Mycobacterium_phage	31.2	3.5e-57
WP_000655242.1|2573903_2574086_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001622005.1|2574067_2574268_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000130128.1|2574556_2576221_+	acetolactate synthase AlsS	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	26.1	3.6e-45
>prophage 199
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2581776	2582631	2804489		Clostridium_phage(100.0%)	1	NA	NA
WP_001044440.1|2581776_2582631_+	M23 family metallopeptidase	NA	E5G070	Clostridium_phage	39.7	2.2e-06
>prophage 200
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2586143	2588100	2804489		Staphylococcus_phage(50.0%)	3	NA	NA
WP_001015496.1|2586143_2586992_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	38.4	1.3e-43
WP_001622009.1|2587210_2587432_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001622010.1|2587359_2588100_-	NAD-dependent protein deacylase	NA	A0A2I2L319	Orpheovirus	30.3	2.3e-15
>prophage 201
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2594422	2595835	2804489		Pandoravirus(100.0%)	1	NA	NA
WP_000169213.1|2594422_2595835_+	6-phospho-beta-galactosidase	NA	A0A0B5JD41	Pandoravirus	28.9	3.0e-48
>prophage 202
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2601637	2603200	2804489		Vibrio_phage(100.0%)	1	NA	NA
WP_000792328.1|2601637_2603200_+	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	24.2	1.2e-18
>prophage 203
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2613405	2614374	2804489		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_000989088.1|2613405_2614374_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4IY97	uncultured_Caudovirales_phage	28.8	1.0e-15
>prophage 204
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2630203	2631112	2804489		Klosneuvirus(100.0%)	1	NA	NA
WP_000162593.1|2630203_2631112_+	arginase	NA	A0A1V0SJM8	Klosneuvirus	32.3	1.2e-26
>prophage 205
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2634708	2642088	2804489		Staphylococcus_phage(100.0%)	1	NA	NA
WP_061731801.1|2634708_2642088_+	DUF1542 domain-containing protein	NA	A0A2H4PQU6	Staphylococcus_phage	24.3	2.3e-19
>prophage 206
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2648360	2651181	2804489		Paramecium_bursaria_Chlorella_virus(50.0%)	2	NA	NA
WP_000334465.1|2648360_2650166_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	M1H1Z3	Paramecium_bursaria_Chlorella_virus	38.6	2.0e-97
WP_000908197.1|2650398_2651181_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.5	1.7e-08
>prophage 207
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2660792	2664629	2804489		Clostridium_phage(50.0%)	4	NA	NA
WP_000070865.1|2660792_2661236_+	DNA starvation/stationary phase protection protein	NA	A0A0A7RTZ1	Clostridium_phage	53.7	5.6e-38
WP_000160304.1|2661356_2662067_-	purine-nucleoside phosphorylase	NA	NA	NA	NA	NA
WP_001083321.1|2662381_2663044_+	deoxyribose-phosphate aldolase	NA	NA	NA	NA	NA
WP_160199834.1|2663327_2664629_+	pyrimidine-nucleoside phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	58.7	1.4e-132
>prophage 208
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2672567	2674178	2804489		Only_Syngen_Nebraska_virus(100.0%)	1	NA	NA
WP_000159966.1|2672567_2674178_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	49.6	2.1e-146
>prophage 209
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2681982	2689735	2804489		Bacillus_virus(25.0%)	9	NA	NA
WP_000273353.1|2681982_2682582_+	thymidine kinase	NA	G3MBK1	Bacillus_virus	42.9	4.8e-32
WP_000460243.1|2682582_2683659_+	peptide chain release factor 1	NA	NA	NA	NA	NA
WP_029549343.1|2683645_2684482_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_072492072.1|2684514_2685612_+	threonylcarbamoyl-AMP synthase	NA	A0A291ATS8	Pandoravirus	35.6	6.1e-41
WP_000697337.1|2685608_2686028_+	low molecular weight protein arginine phosphatase	NA	NA	NA	NA	NA
WP_000654179.1|2686134_2686659_+	TIGR01440 family protein	NA	NA	NA	NA	NA
WP_000120494.1|2686685_2687924_+	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	53.0	8.2e-103
WP_000048712.1|2687951_2688581_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_000723406.1|2688604_2689735_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	31.1	1.4e-27
>prophage 210
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2700168	2700564	2804489		Staphylococcus_phage(100.0%)	1	NA	NA
WP_160199836.1|2700168_2700564_+	single-stranded DNA-binding protein	NA	A0A1J0MFK5	Staphylococcus_phage	38.5	2.7e-15
>prophage 211
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2706473	2707121	2804489		Moumouvirus(100.0%)	1	NA	NA
WP_001187625.1|2706473_2707121_-	HD domain-containing protein	NA	H2ED17	Moumouvirus	27.5	9.5e-10
>prophage 212
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2714321	2715842	2804489		Diachasmimorpha_longicaudata_entomopoxvirus(100.0%)	1	NA	NA
WP_001178935.1|2714321_2715842_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	33.9	2.0e-58
>prophage 213
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2721516	2723544	2804489		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_000546588.1|2721516_2723544_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	23.1	1.5e-24
>prophage 214
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2728693	2732077	2804489		Clostridium_botulinum_C_phage(50.0%)	5	NA	NA
WP_000621175.1|2728693_2729056_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	Q332J9	Clostridium_botulinum_C_phage	32.8	4.2e-07
WP_000390829.1|2729404_2730406_+	PP2C family protein-serine/threonine phosphatase	NA	NA	NA	NA	NA
WP_001052491.1|2730524_2730851_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_001190825.1|2730852_2731332_+	anti-sigma B factor RsbW	NA	NA	NA	NA	NA
WP_001041107.1|2731306_2732077_+	RNA polymerase sigma factor SigB	NA	A0A0A0RNH9	Bacillus_phage	34.9	1.3e-21
>prophage 215
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2746803	2751527	2804489		Micromonas_sp._RCC1109_virus(50.0%)	4	NA	NA
WP_000094576.1|2746803_2748333_-	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	28.1	5.5e-08
WP_072399972.1|2748362_2749382_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_000196911.1|2749503_2749758_-	ACT domain-containing protein	NA	NA	NA	NA	NA
WP_000047819.1|2749757_2751527_-	biosynthetic-type acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	30.1	7.0e-63
>prophage 216
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2755292	2769358	2804489	tRNA	Moraxella_phage(16.67%)	13	NA	NA
WP_000159047.1|2755292_2756318_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	40.9	3.1e-63
WP_000106320.1|2756631_2758242_-	MutS family DNA mismatch repair protein	NA	A0A0N9R0S5	Chrysochromulina_ericina_virus	26.6	3.3e-19
WP_072468947.1|2758333_2758447_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000602061.1|2758607_2760536_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	30.2	7.1e-53
WP_160200335.1|2760788_2761424_+	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
WP_073394851.1|2761778_2762807_+	YeeE/YedE family protein	NA	NA	NA	NA	NA
WP_000581077.1|2762866_2763091_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_001052281.1|2763299_2764550_+	ammonium transporter	NA	H8ZJB2	Ostreococcus_tauri_virus	31.2	3.4e-40
WP_029549347.1|2764733_2765684_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_000141419.1|2765832_2767317_+	sucrose-6-phosphate hydrolase	NA	S6ATV4	Bacillus_phage	25.8	4.0e-19
WP_001253295.1|2767313_2768273_+	carbohydrate kinase	NA	NA	NA	NA	NA
WP_031785433.1|2768462_2768570_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000688492.1|2768641_2769358_-	response regulator transcription factor	NA	A0A2H4J4Z6	uncultured_Caudovirales_phage	32.6	2.3e-25
>prophage 217
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2773440	2774570	2804489	transposase	Paenibacillus_phage(100.0%)	1	NA	NA
WP_098686295.1|2773440_2774570_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	54.3	5.2e-80
>prophage 218
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2777634	2779611	2804489		uncultured_virus(100.0%)	2	NA	NA
WP_000917289.1|2777634_2777919_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000240642.1|2777994_2779611_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
>prophage 219
NZ_CP047803	Staphylococcus aureus strain UP_1097 chromosome, complete genome	2804489	2784633	2804018	2804489	integrase	Staphylococcus_phage(97.22%)	37	2777882:2777897	2789209:2789224
2777882:2777897	attL	TTTTAAATGAAGAAGA	NA	NA	NA	NA
WP_000595616.1|2784633_2785653_+	beta-channel forming cytolysin	NA	A0A2I6PEU3	Staphylococcus_phage	39.8	2.6e-54
WP_000857191.1|2786790_2787828_-|integrase	site-specific integrase	integrase	A0EWV2	Staphylococcus_phage	100.0	9.1e-180
WP_000825947.1|2787886_2788351_-	hypothetical protein	NA	A0EWV3	Staphylococcus_phage	100.0	1.1e-28
WP_000705248.1|2788450_2788633_-	hypothetical protein	NA	M9NSW6	Staphylococcus_phage	100.0	4.1e-27
WP_000591749.1|2788836_2789178_-	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
WP_000759682.1|2789183_2790116_-	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
2789209:2789224	attR	TCTTCTTCATTTAAAA	NA	NA	NA	NA
WP_001031454.1|2790131_2790845_-	helix-turn-helix transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
WP_001801500.1|2790807_2790981_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000854073.1|2790977_2791241_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	98.9	2.1e-40
WP_001025404.1|2791256_2791472_+	DUF2829 domain-containing protein	NA	A0A0H3U4C7	Staphylococcus_phage	100.0	4.8e-35
WP_000128907.1|2791460_2791790_-	hypothetical protein	NA	M9NS98	Staphylococcus_phage	100.0	2.7e-53
WP_001148605.1|2791840_2792593_+	oxidoreductase	NA	M9NTH5	Staphylococcus_phage	100.0	1.1e-139
WP_001148862.1|2792608_2792806_+	hypothetical protein	NA	O80075	Staphylococcus_phage	87.7	3.5e-24
WP_000762519.1|2792792_2793173_-	DUF2513 domain-containing protein	NA	Q9T1Z5	Staphylococcus_phage	99.2	3.4e-68
WP_001120201.1|2793227_2793551_+	DUF771 domain-containing protein	NA	A0A075LYF5	Staphylococcus_phage	100.0	3.0e-57
WP_000048129.1|2793547_2793709_+	DUF1270 family protein	NA	A0A1P8L6G0	Staphylococcus_phage	100.0	1.9e-20
WP_000165371.1|2793803_2794106_+	DUF2482 family protein	NA	A0A1P8L6F8	Staphylococcus_phage	100.0	7.0e-48
WP_000291510.1|2794110_2794371_+	DUF1108 family protein	NA	A0A1P8L6F5	Staphylococcus_phage	100.0	5.2e-44
WP_001205732.1|2794379_2794643_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000700555.1|2794651_2796595_+	AAA family ATPase	NA	S4V9K6	Staphylococcus_phage	100.0	0.0e+00
WP_000138475.1|2796596_2797517_+	recombinase	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_073394849.1|2797597_2798215_+	MBL fold metallo-hydrolase	NA	A0A2I6PDI9	Staphylococcus_phage	100.0	9.1e-87
WP_000610648.1|2798215_2798686_+	single-stranded DNA-binding protein	NA	A0EWX3	Staphylococcus_phage	98.7	1.3e-80
WP_160199843.1|2798715_2799609_+	DnaD domain-containing protein	NA	A0A2I6PDG7	Staphylococcus_phage	98.7	3.5e-140
WP_000338530.1|2799615_2799834_+	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
WP_000401960.1|2799842_2800247_+	RusA family crossover junction endodeoxyribonuclease	NA	A0EWX6	Staphylococcus_phage	100.0	1.9e-72
WP_000101288.1|2800259_2800628_+	hypothetical protein	NA	A0A0H3U2T3	Staphylococcus_phage	100.0	2.0e-49
WP_000131370.1|2800631_2800874_+	hypothetical protein	NA	Q4ZDP7	Staphylococcus_virus	95.0	2.1e-39
WP_001065097.1|2800888_2801143_+	DUF1024 family protein	NA	A0A0H3U469	Staphylococcus_phage	100.0	5.0e-39
WP_001066447.1|2801292_2801829_+	hypothetical protein	NA	A0A0H3U2Z8	Staphylococcus_phage	100.0	7.2e-96
WP_001282074.1|2801865_2802111_+	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
WP_000195803.1|2802107_2802314_+	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
WP_160200336.1|2802310_2802697_+	hypothetical protein	NA	W5R986	Staphylococcus_phage	99.2	6.8e-64
WP_000595265.1|2802693_2802843_+	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_001622114.1|2802842_2803043_+	DUF1514 domain-containing protein	NA	A0A2I6PDV9	Staphylococcus_phage	98.5	4.0e-28
WP_000590122.1|2803070_2803487_+	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000988336.1|2803718_2804018_+	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
