The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	0	25609	2853973	holin,terminase,portal,tail,protease,head,capsid	Staphylococcus_phage(100.0%)	28	NA	NA
WP_000625088.1|0_1662_+|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
WP_000025274.1|1677_2865_+|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000642728.1|2848_3586_+|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_000154559.1|3609_4755_+|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
WP_000238236.1|4774_5059_+	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000150936.1|5048_5333_+|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000755150.1|5316_5679_+|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
WP_000114226.1|5675_6080_+	hypothetical protein	NA	G4KNQ5	Staphylococcus_phage	100.0	4.3e-69
WP_000565498.1|6076_6484_+	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000268740.1|6484_7129_+|tail	phage tail protein	tail	G4KNQ7	Staphylococcus_phage	100.0	6.5e-120
WP_071621395.1|7170_7395_+	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_001096355.1|7444_7795_+	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_160199648.1|8039_12569_+|tail	phage tail tape measure protein	tail	A0EX03	Staphylococcus_phage	96.9	0.0e+00
WP_000567396.1|12565_14050_+|tail	phage tail protein	tail	A0A2I6PDJ0	Staphylococcus_phage	99.8	4.5e-297
WP_000582152.1|14065_17848_+	hypothetical protein	NA	A0A068A201	Staphylococcus_phage	99.6	0.0e+00
WP_001000058.1|17840_17993_+	hypothetical protein	NA	A0A1W6JPL6	Staphylococcus_phage	100.0	7.6e-19
WP_001262621.1|18038_18326_+	hypothetical protein	NA	A0A1X9H0N7	Staphylococcus_phage	100.0	7.6e-44
WP_000340977.1|18381_18756_+	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
WP_000034846.1|19167_19950_+	staphylococcal enterotoxin type P	NA	A0A075M4C7	Staphylococcus_phage	99.6	1.6e-149
WP_011447039.1|20152_20329_+|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_031762631.1|20381_20489_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000611512.1|20540_20795_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_002955266.1|20806_21562_+	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	99.6	7.6e-152
WP_000920042.1|21752_22244_+	staphylokinase	NA	A0A075LYD3	Staphylococcus_phage	100.0	8.0e-86
WP_000727645.1|23319_23769_-	chemotaxis-inhibiting protein CHIPS	NA	A0A075LZI2	Staphylococcus_phage	100.0	8.7e-79
WP_000702262.1|24451_24802_+	complement inhibitor SCIN-A	NA	A7TWS0	Staphylococcus_phage	100.0	7.5e-54
WP_001791826.1|24854_25115_-	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000669789.1|25429_25609_-	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
>prophage 2
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	31218	33665	2853973		Staphylococcus_phage(100.0%)	3	NA	NA
WP_000991306.1|31218_32115_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	5.0e-17
WP_000645727.1|32115_32796_+	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000763043.1|32792_33665_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	36.0	1.0e-27
>prophage 3
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	39428	39830	2853973		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000205106.1|39428_39830_-	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
>prophage 4
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	44026	46053	2853973		Bacillus_virus(50.0%)	2	NA	NA
WP_000149686.1|44026_44587_-	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_000275727.1|44955_46053_+	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	3.3e-47
>prophage 5
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	50083	52367	2853973		Bacillus_virus(100.0%)	2	NA	NA
WP_000284436.1|50083_51553_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	5.9e-108
WP_000040866.1|51545_52367_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
>prophage 6
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	56068	62835	2853973		Gordonia_phage(33.33%)	5	NA	NA
WP_000572878.1|56068_57364_+	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_001165363.1|57472_57775_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000272056.1|57946_58639_+	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_000992924.1|58635_60828_+	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000774556.1|60831_62835_+	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.2	1.2e-114
>prophage 7
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	70009	75038	2853973		Catovirus(33.33%)	5	NA	NA
WP_001231451.1|70009_70957_+	diacylglycerol kinase	NA	A0A1V0SBJ0	Catovirus	27.8	1.2e-16
WP_001147865.1|71037_72399_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A1X9I6F4	Streptococcus_phage	43.6	1.4e-103
WP_000548781.1|72568_73099_+	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
WP_000140172.1|73345_74416_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_000613738.1|74483_75038_-	3'-5' exonuclease	NA	B5WZL1	Staphylococcus_phage	35.7	1.2e-29
>prophage 8
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	78490	78904	2853973		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001557448.1|78490_78904_+	hypothetical protein	NA	A0A1Q1PVU5	Staphylococcus_phage	38.3	6.7e-17
>prophage 9
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	83958	84588	2853973		Bacillus_phage(100.0%)	1	NA	NA
WP_000153535.1|83958_84588_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	30.8	8.1e-06
>prophage 10
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	100068	101805	2853973		Bacillus_phage(100.0%)	1	NA	NA
WP_000597238.1|100068_101805_+	SAV1866 family putative multidrug efflux ABC transporter	NA	W8CYL7	Bacillus_phage	30.4	1.7e-53
>prophage 11
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	115042	223593	2853973	tRNA,protease,transposase	Staphylococcus_phage(92.73%)	101	NA	NA
WP_001557163.1|115042_116362_-|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
WP_000063582.1|116945_118007_+	PTS transporter subunit IIC	NA	NA	NA	NA	NA
WP_160199649.1|118264_119722_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_001144055.1|119708_120437_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	1.0e-36
WP_001793998.1|120572_121715_+|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
WP_000181394.1|121719_122190_+|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
WP_001251224.1|122348_122948_+	glucosamine-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_000031108.1|122972_123125_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000901023.1|123672_124068_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000116228.1|124263_125649_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_000669376.1|126101_126923_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000437969.1|127085_128198_+	GAF domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
WP_001045135.1|128219_128843_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000375864.1|129198_129663_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000992518.1|129841_130966_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_000290301.1|131034_131379_+	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	29.7	7.5e-06
WP_001802255.1|131917_132016_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000238227.1|132306_133503_+	exonuclease SbcCD subunit D	NA	NA	NA	NA	NA
WP_000584630.1|133492_136429_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_001244175.1|136425_137367_+	3'-5' exoribonuclease YhaM	NA	NA	NA	NA	NA
WP_000782121.1|137487_138450_-	foldase	NA	NA	NA	NA	NA
WP_000477959.1|138654_139212_-	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
WP_000648118.1|139946_140312_-	YtxH domain-containing protein	NA	NA	NA	NA	NA
WP_000004981.1|140453_140876_-	HIT family protein	NA	NA	NA	NA	NA
WP_000216874.1|141009_141750_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	1.2e-24
WP_000551836.1|141742_142966_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000737976.1|143089_143593_-	signal transduction protein TraP	NA	NA	NA	NA	NA
WP_001790154.1|143755_143866_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000233526.1|143855_144893_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_000162881.1|144950_145874_+	ferrochelatase	NA	NA	NA	NA	NA
WP_000167542.1|145897_147298_+	protoporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_000132890.1|147620_148175_+	serine hydrolase family protein	NA	NA	NA	NA	NA
WP_010922839.1|149534_150317_+	staphylococcal enterotoxin type O	NA	A0A1X9H080	Staphylococcus_phage	36.7	1.1e-31
WP_000821658.1|150597_151317_+	staphylococcal enterotoxin type M	NA	A0A1X9H080	Staphylococcus_phage	35.8	2.3e-25
WP_000713847.1|151351_152080_+	staphylococcal enterotoxin type I	NA	A0A1X9H080	Staphylococcus_phage	39.2	1.1e-27
WP_001236362.1|153043_153799_+	staphylococcal enterotoxin type N	NA	A0A075M4C7	Staphylococcus_phage	41.4	6.0e-40
WP_000736709.1|154081_154858_+	staphylococcal enterotoxin type G	NA	NA	NA	NA	NA
WP_000848318.1|155409_156186_-	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
WP_000617704.1|156206_156443_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001253432.1|156520_157015_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000206343.1|157848_158637_-	DUF1828 domain-containing protein	NA	A0A2H4PQI0	Staphylococcus_phage	98.5	3.6e-144
WP_000473596.1|159999_160935_+	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
WP_000782463.1|160936_161920_+	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.4	1.8e-185
WP_000543854.1|162289_163081_-	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
WP_000550252.1|163085_163559_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000469591.1|163814_164033_+	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	80.6	2.0e-25
WP_001092780.1|164505_165087_-	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	64.8	9.6e-54
WP_001039427.1|166050_166758_+|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	97.0	7.9e-127
WP_001039454.1|166882_167605_+|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	98.3	3.5e-130
WP_001038872.1|167662_168382_+|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	98.7	1.3e-129
WP_001038704.1|168502_169222_+|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
WP_011447030.1|169170_169278_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038752.1|169379_170099_+|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	99.6	1.9e-131
WP_001791797.1|170161_170296_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001793440.1|170276_172016_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	100.0	2.4e-289
WP_000072627.1|172008_173238_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	64.7	4.0e-134
WP_001792025.1|174313_174415_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001801861.1|174537_174633_-	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_000414216.1|175987_176560_-	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	2.3e-23
WP_000627540.1|176660_177002_-	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	94.7	1.1e-54
WP_000669024.1|177042_177669_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	79.8	3.1e-74
WP_000070642.1|177743_178739_-	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.9	2.6e-67
WP_001795210.1|178819_179470_-	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	94.0	2.9e-51
WP_012840523.1|179772_180228_+	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	99.3	3.6e-80
WP_000348364.1|180386_181865_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.6	2.8e-283
WP_000778528.1|181869_182871_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.3	5.3e-185
WP_000718107.1|182867_183125_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000672013.1|183190_183664_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
WP_001822900.1|183668_184415_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.8	1.4e-142
WP_000109906.1|184792_186385_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_000933820.1|186756_187953_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
WP_000366163.1|188074_188983_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
WP_000453306.1|189194_190028_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	7.8e-158
WP_000623470.1|192024_192378_-	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	94.0	3.8e-21
WP_001200542.1|192374_192740_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000091442.1|192995_193298_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001096494.1|193557_194271_+	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_001168903.1|194710_195346_-|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001030469.1|195641_196085_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_001153742.1|196071_196515_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000671057.1|196627_197098_-	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	98.1	8.8e-82
WP_000384171.1|197296_197521_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001032833.1|197796_198651_+	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000989121.1|198737_200030_-	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_000221177.1|200029_200344_-	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	9.8e-53
WP_001261668.1|200866_202369_+	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.9e-29
WP_000384185.1|202861_203893_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	4.0e-196
WP_000493887.1|203899_204532_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	98.6	5.5e-111
WP_001159037.1|204542_205724_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.5	5.6e-226
WP_001008549.1|205736_206201_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	100.0	4.5e-70
WP_001196362.1|206322_207324_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.4	2.6e-184
WP_001790712.1|207434_207554_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000266096.1|207556_208384_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_000757543.1|208955_209357_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000764419.1|209479_210043_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000526539.1|210039_210993_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_001025067.1|211102_212284_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	7.3e-218
WP_001108730.1|212574_214989_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.5	0.0e+00
WP_000836461.1|215010_215322_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	99.0	4.8e-52
WP_001050574.1|215647_222208_+	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	98.2	2.3e-305
WP_000285020.1|222324_223593_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	99.1	9.1e-57
>prophage 12
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	234998	240326	2853973		Staphylococcus_phage(50.0%)	3	NA	NA
WP_001091387.1|234998_235856_+	DUF1444 domain-containing protein	NA	A0A2H4PQY3	Staphylococcus_phage	100.0	6.8e-72
WP_001048368.1|235884_236481_+	DUF4479 domain-containing protein	NA	NA	NA	NA	NA
WP_000118314.1|236501_240326_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	47.0	2.6e-83
>prophage 13
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	249066	250773	2853973		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000862096.1|249066_250773_+	acetate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	99.6	8.0e-274
>prophage 14
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	257377	260008	2853973	tRNA,protease	Cronobacter_phage(50.0%)	2	NA	NA
WP_000186029.1|257377_258640_+|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	42.1	2.7e-85
WP_001279338.1|258733_260008_-|protease	trypsin-like serine protease	protease	A0A1B1IRD3	uncultured_Mediterranean_phage	29.0	1.7e-10
>prophage 15
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	263777	267910	2853973		Staphylococcus_phage(50.0%)	4	NA	NA
WP_000808849.1|263777_265382_-	phosphoglycerate dehydrogenase	NA	A0A2H4PQU8	Staphylococcus_phage	100.0	1.2e-114
WP_000291420.1|265368_266526_-	alanine--glyoxylate aminotransferase family protein	NA	NA	NA	NA	NA
WP_000553924.1|266640_267087_-	OsmC family protein	NA	NA	NA	NA	NA
WP_000174280.1|267166_267910_+	glycerophosphoryl diester phosphodiesterase	NA	M1HTS7	Paramecium_bursaria_Chlorella_virus	30.0	4.9e-18
>prophage 16
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	285502	288700	2853973		Streptomyces_phage(100.0%)	1	NA	NA
WP_000226918.1|285502_288700_+	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	30.5	7.2e-135
>prophage 17
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	293633	295391	2853973		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001232648.1|293633_295391_+	pyruvate kinase	NA	A0A2H4PQU5	Staphylococcus_phage	100.0	2.6e-41
>prophage 18
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	300275	308439	2853973		Feldmannia_irregularis_virus(25.0%)	5	NA	NA
WP_000080028.1|300275_300980_+	response regulator transcription factor	NA	Q6XM27	Feldmannia_irregularis_virus	28.7	1.6e-07
WP_015445861.1|300979_302641_+	PAS domain S-box protein	NA	W8CYF6	Bacillus_phage	39.4	5.8e-35
WP_000849428.1|303139_304627_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038317.1|304920_307551_+	DNA polymerase I	NA	A8E2B3	Enterococcus_phage	33.0	6.1e-47
WP_001114454.1|307566_308439_+	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	G3MA33	Bacillus_virus	39.1	2.6e-42
>prophage 19
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	312354	323507	2853973	tRNA,protease	Brevibacillus_phage(20.0%)	12	NA	NA
WP_000808621.1|312354_313275_+	primosomal protein DnaI	NA	S5MU12	Brevibacillus_phage	29.4	8.1e-31
WP_001790562.1|313367_313490_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000435132.1|313687_315625_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	36.0	7.8e-116
WP_000049145.1|316050_317544_+	amino acid permease	NA	NA	NA	NA	NA
WP_001791162.1|317772_318300_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	33.1	4.1e-11
WP_001125540.1|318328_318529_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_001138360.1|318575_318932_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_000032657.1|319073_319682_+	NUDIX domain-containing protein	NA	A0A060AB76	Staphylococcus_phage	35.9	6.6e-21
WP_001280022.1|319700_320630_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001790560.1|320634_320745_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000127573.1|320792_322094_+	trigger factor	NA	NA	NA	NA	NA
WP_000472302.1|322244_323507_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	62.0	5.0e-140
>prophage 20
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	333074	335705	2853973	tRNA	Catovirus(100.0%)	1	NA	NA
WP_000425353.1|333074_335705_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	40.7	3.7e-153
>prophage 21
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	345639	381252	2853973	tRNA	uncultured_Mediterranean_phage(18.75%)	31	NA	NA
WP_001005768.1|345639_346644_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
WP_001019178.1|346645_347671_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001112045.1|347693_348833_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001160682.1|348851_349112_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_000749795.1|349386_351666_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_000595011.1|351868_354142_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	8.1e-64
WP_000364542.1|354163_354682_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_001058587.1|355109_357299_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	37.7	6.9e-12
WP_000869983.1|357310_357763_+|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
WP_000717800.1|357759_358635_+	cell wall amidase	NA	A0A0N9SGH1	Paenibacillus_phage	33.7	4.7e-12
WP_000590826.1|359095_360358_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000044799.1|360373_362140_+|tRNA	aspartate--tRNA ligase	tRNA	A0A2K9L0E9	Tupanvirus	27.3	1.3e-16
WP_001790559.1|362472_362601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000682646.1|362600_363374_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_000102726.1|363534_364809_-	replication-associated recombination protein A	NA	A0A127AWE7	Bacillus_phage	50.5	3.1e-105
WP_000704122.1|364893_365316_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_000752909.1|365415_365598_+	CsbD family protein	NA	NA	NA	NA	NA
WP_000009238.1|365637_365784_+	hypothetical protein	NA	NA	NA	NA	NA
WP_160199651.1|366020_367034_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_000409157.1|367345_368488_+	cysteine desulfurase	NA	A0A1X7QGF3	Faustovirus	30.8	5.4e-32
WP_000066097.1|368488_369607_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_000567017.1|370301_370970_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_001283312.1|370971_373449_+	ATP-dependent RecD-like DNA helicase	NA	A0A0K2FLP8	Brevibacillus_phage	29.0	1.1e-66
WP_000734075.1|373791_376422_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	34.4	3.2e-64
WP_000426912.1|376484_376745_+	IreB family regulatory phosphoprotein	NA	NA	NA	NA	NA
WP_000939059.1|376748_377177_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_000134779.1|377191_377500_+	DUF1292 domain-containing protein	NA	NA	NA	NA	NA
WP_000342258.1|377784_378423_+	O-methyltransferase	NA	A0A2P1JQT7	Mycobacterium_phage	28.8	3.2e-10
WP_000137772.1|378425_379349_+	U32 family peptidase	NA	NA	NA	NA	NA
WP_000848304.1|379360_380629_+	U32 family peptidase	NA	Q6DW11	Phage_TP	31.7	4.0e-36
WP_000648617.1|380628_381252_+	uridine kinase	NA	A0A1V0SAA3	Catovirus	41.1	2.8e-35
>prophage 22
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	397930	404094	2853973		Bacillus_phage(33.33%)	5	NA	NA
WP_000439693.1|397930_398392_+	ComE operon protein 2	NA	A7KUY9	Bacillus_phage	58.8	3.6e-35
WP_000953309.1|398450_400598_+	DNA internalization-related competence protein ComEC/Rec2	NA	Q332C0	Clostridium_botulinum_C_phage	32.2	1.6e-32
WP_001282563.1|400654_401629_+	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
WP_001274017.1|401673_401925_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_000368338.1|402270_404094_+	elongation factor 4	NA	A0A1S5SF82	Streptococcus_phage	25.1	6.1e-22
>prophage 23
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	407588	410696	2853973		Micromonas_pusilla_virus(50.0%)	2	NA	NA
WP_000034716.1|407588_409421_+	molecular chaperone DnaK	NA	G8DDB7	Micromonas_pusilla_virus	46.5	4.4e-137
WP_001119021.1|409556_410696_+	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	25.8	1.2e-26
>prophage 24
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	417166	418114	2853973		Rhizobium_phage(100.0%)	1	NA	NA
WP_001117767.1|417166_418114_+	PhoH family protein	NA	L7TP00	Rhizobium_phage	46.8	6.4e-47
>prophage 25
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	421167	434913	2853973	tRNA	Klosneuvirus(28.57%)	13	NA	NA
WP_001030080.1|421167_422559_-|tRNA	glycine--tRNA ligase	tRNA	A0A1V0SIF1	Klosneuvirus	27.4	4.7e-46
WP_001797828.1|422893_423517_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000411298.1|423527_424346_+	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_001217257.1|424406_426224_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.3	7.9e-54
WP_001283055.1|426447_427554_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_000624577.1|427684_428362_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_000683940.1|428364_429465_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_001062177.1|429578_430925_+	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
WP_000924220.1|430934_431825_+	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	36.0	3.4e-26
WP_001213908.1|431950_432736_+	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000564315.1|432777_433641_+	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_001095260.1|433627_434038_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_000863556.1|434313_434913_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	54.7	9.2e-60
>prophage 26
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	441086	441710	2853973		Streptococcus_phage(100.0%)	1	NA	NA
WP_001223008.1|441086_441710_+	MBL fold metallo-hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	37.1	1.6e-30
>prophage 27
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	447254	450066	2853973		Prochlorococcus_phage(100.0%)	2	NA	NA
WP_000019691.1|447254_448601_+	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	NA	E3SN07	Prochlorococcus_phage	39.2	1.7e-61
WP_000202188.1|448593_450066_+	glycine dehydrogenase subunit 2	NA	E3SN07	Prochlorococcus_phage	41.3	2.8e-81
>prophage 28
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	457566	464137	2853973		Indivirus(66.67%)	6	NA	NA
WP_001286928.1|457566_458904_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	37.7	1.6e-43
WP_000159865.1|458896_459127_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_000183383.1|459104_459986_+	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	25.8	2.0e-10
WP_001124985.1|460417_460870_+	transcriptional regulator ArgR	NA	NA	NA	NA	NA
WP_000942210.1|460885_462565_+	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_001291533.1|462715_464137_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	26.3	5.1e-40
>prophage 29
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	470966	472373	2853973		Synechococcus_phage(100.0%)	1	NA	NA
WP_000193707.1|470966_472373_+	NADP-dependent phosphogluconate dehydrogenase	NA	A0A222YX62	Synechococcus_phage	31.1	4.3e-31
>prophage 30
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	478799	480284	2853973		Cyanophage(100.0%)	1	NA	NA
WP_000105070.1|478799_480284_-	glucose-6-phosphate dehydrogenase	NA	M4SIY3	Cyanophage	37.8	2.4e-80
>prophage 31
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	483811	495421	2853973		Klosneuvirus(16.67%)	12	NA	NA
WP_001171335.1|483811_484720_-	aldo/keto reductase	NA	A0A1V0SKP9	Klosneuvirus	32.0	4.4e-05
WP_000365240.1|484801_485344_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_000392691.1|485448_485898_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_000447733.1|485946_486834_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	31.1	5.6e-37
WP_001183429.1|486911_487418_-	DUF309 domain-containing protein	NA	NA	NA	NA	NA
WP_000273371.1|487509_488241_+	segregation and condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	21.8	7.9e-05
WP_000368656.1|488233_488776_+	SMC-Scp complex subunit ScpB	NA	NA	NA	NA	NA
WP_000159577.1|488768_489506_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_000064078.1|489638_490364_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	43.0	3.5e-45
WP_000987774.1|490344_492096_+	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	33.2	2.2e-21
WP_001557355.1|492339_493266_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001033761.1|493258_495421_+	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	100.0	2.7e-109
>prophage 32
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	499849	502528	2853973		Bacillus_phage(50.0%)	3	NA	NA
WP_001151997.1|499849_500098_-	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
WP_001163801.1|500205_501159_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000902099.1|501148_502528_+	ATP-dependent DNA helicase RecQ	NA	A0A2P1EM61	Moumouvirus	33.6	1.4e-55
>prophage 33
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	511952	517419	2853973		Bacillus_phage(25.0%)	7	NA	NA
WP_001043863.1|511952_512225_+	DNA-binding protein HU	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000450555.1|512655_513228_+	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_000774684.1|513230_513956_+	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_001817755.1|513972_514917_+	heptaprenyl diphosphate synthase subunit II	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_000442480.1|515008_515458_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_000789522.1|515666_515867_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001269921.1|516252_517419_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	31.8	5.8e-34
>prophage 34
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	521081	521657	2853973		Bacillus_virus(100.0%)	1	NA	NA
WP_000005212.1|521081_521657_+	IDEAL domain-containing protein	NA	G3MAV7	Bacillus_virus	27.2	2.1e-08
>prophage 35
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	525029	532535	2853973	tRNA	unidentified_phage(25.0%)	5	NA	NA
WP_000361540.1|525029_526232_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	43.3	4.2e-35
WP_000049921.1|526218_527190_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000525078.1|527213_529907_+	ATP-dependent helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
WP_000858779.1|530228_531521_+|tRNA	asparagine--tRNA ligase	tRNA	M1PB22	Moumouvirus	31.3	8.7e-55
WP_000362218.1|531848_532535_+	DnaD domain-containing protein	NA	Q938N2	Temperate_phage	32.6	1.2e-07
>prophage 36
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	536275	536902	2853973		Bacillus_phage(100.0%)	1	NA	NA
WP_001108889.1|536275_536902_-	Holliday junction resolvase RecU	NA	A0A1C8E9C3	Bacillus_phage	35.5	1.7e-24
>prophage 37
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	546227	547106	2853973		Bacillus_phage(100.0%)	1	NA	NA
WP_001133021.1|546227_547106_+	5'-3' exonuclease	NA	S5M4P0	Bacillus_phage	29.5	1.4e-19
>prophage 38
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	586057	595447	2853973		Staphylococcus_phage(60.0%)	13	NA	NA
WP_000282171.1|586057_586762_-	queuosine precursor transporter	NA	A0A2H4J2N7	uncultured_Caudovirales_phage	23.8	8.4e-12
WP_001795441.1|587006_587201_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_000691942.1|587212_587464_+	hypothetical protein	NA	NA	NA	NA	NA
WP_160199655.1|587501_588626_+	virulence factor	NA	NA	NA	NA	NA
WP_000995287.1|588641_589079_+	BrxA/BrxB family bacilliredoxin	NA	NA	NA	NA	NA
WP_000934894.1|589502_590459_+	thymidylate synthase	NA	A0A0N9SH48	Staphylococcus_phage	85.2	1.6e-167
WP_000175746.1|590658_591138_+	dihydrofolate reductase	NA	A0A0N9S8H6	Staphylococcus_phage	79.9	2.0e-73
WP_000166059.1|591152_591992_+	fatty acid kinase FakB2	NA	A0A0N9SI50	Staphylococcus_phage	77.3	2.3e-48
WP_000159903.1|592077_592611_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_000913317.1|592603_593032_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA	NA
WP_000473653.1|593043_593544_+	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
WP_000801007.1|593543_593765_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000342132.1|593956_595447_+	S41 family peptidase	NA	A0A0R6PIZ1	Moraxella_phage	30.5	2.9e-22
>prophage 39
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	598857	600869	2853973		Bacillus_phage(50.0%)	2	NA	NA
WP_000192137.1|598857_599517_+	response regulator transcription factor ArlR	NA	W8CYM9	Bacillus_phage	33.8	1.1e-34
WP_160199656.1|599513_600869_+	sensor histidine kinase ArlS	NA	A0A1V0SGX0	Hokovirus	28.2	2.1e-14
>prophage 40
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	607034	607826	2853973		Halovirus(100.0%)	1	NA	NA
WP_001185421.1|607034_607826_+	MoxR family ATPase	NA	R4TG24	Halovirus	34.2	3.3e-12
>prophage 41
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	611366	616397	2853973	lysis	Lactobacillus_phage(33.33%)	7	NA	NA
WP_000138413.1|611366_612503_-	toxic anion resistance protein	NA	A0A291I9K4	Lactobacillus_phage	28.3	7.4e-34
WP_001788788.1|612534_613164_-|lysis	5-bromo-4-chloroindolyl phosphate hydrolysis protein	lysis	NA	NA	NA	NA
WP_001215907.1|613182_613452_-	acylphosphatase	NA	NA	NA	NA	NA
WP_000269923.1|613614_613923_+	DUF1033 family protein	NA	NA	NA	NA	NA
WP_000809131.1|614093_614294_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	66.2	8.4e-18
WP_000876201.1|614490_614892_+	sarA expression modulator protein Msa	NA	NA	NA	NA	NA
WP_000216946.1|615131_616397_-	diaminopimelate decarboxylase	NA	A0A0P0YM38	Yellowstone_lake_phycodnavirus	23.2	6.2e-13
>prophage 42
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	624444	626046	2853973		Klosneuvirus(100.0%)	1	NA	NA
WP_000942303.1|624444_626046_-	ATP-binding cassette domain-containing protein	NA	A0A1V0SKJ1	Klosneuvirus	25.7	5.5e-51
>prophage 43
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	631135	634589	2853973		Indivirus(50.0%)	3	NA	NA
WP_000079447.1|631135_631987_+	phosphate ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	29.7	8.9e-16
WP_000974847.1|631993_632635_+	phosphate signaling complex protein PhoU	NA	NA	NA	NA	NA
WP_000077571.1|632774_634589_-	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	47.1	5.1e-154
>prophage 44
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	638003	638705	2853973		Tupanvirus(100.0%)	1	NA	NA
WP_000571259.1|638003_638705_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	30.3	2.0e-13
>prophage 45
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	646801	649156	2853973		Acinetobacter_phage(100.0%)	3	NA	NA
WP_000153613.1|646801_647584_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	35.9	2.7e-27
WP_000173833.1|647585_648584_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	34.9	8.5e-34
WP_000604816.1|648589_649156_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	32.1	1.3e-23
>prophage 46
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	653474	654737	2853973		Bacillus_phage(100.0%)	1	NA	NA
WP_000283016.1|653474_654737_-	Y-family DNA polymerase	NA	O64031	Bacillus_phage	44.3	2.6e-96
>prophage 47
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	664396	668790	2853973		Bacillus_phage(50.0%)	2	NA	NA
WP_001289546.1|664396_666799_-	DNA topoisomerase IV subunit A	NA	A0A172JHV7	Bacillus_phage	32.4	1.8e-93
WP_031771138.1|666798_668790_-	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	40.5	8.0e-116
>prophage 48
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	674781	676428	2853973		Vibrio_phage(100.0%)	1	NA	NA
WP_001088978.1|674781_676428_-	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	24.4	2.5e-22
>prophage 49
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	680097	681219	2853973		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000691301.1|680097_681219_-	exonuclease SbcCD subunit D	NA	A0A1X9I9U0	Staphylococcus_phage	22.7	4.3e-10
>prophage 50
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	685369	691025	2853973		Phage_Wrath(25.0%)	7	NA	NA
WP_001208755.1|685369_685993_+	transcriptional repressor LexA	NA	A0A1B2APZ1	Phage_Wrath	63.8	5.9e-17
WP_000380730.1|686372_687236_-	CAP domain-containing protein	NA	U5Q0C0	Bacillus_phage	41.5	9.1e-16
WP_001791425.1|687309_687414_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000688122.1|687410_688388_-	GMP reductase	NA	Q4ZCY7	Staphylococcus_virus	99.7	8.0e-186
WP_001085655.1|688544_688814_-	30S ribosomal protein S14	NA	NA	NA	NA	NA
WP_001265708.1|689267_689417_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_000082539.1|689507_691025_-	catalase	NA	A0A2K9L0T1	Tupanvirus	43.2	2.3e-91
>prophage 51
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	701163	705439	2853973		Bacillus_phage(50.0%)	6	NA	NA
WP_000841346.1|701163_701697_-	thermonuclease family protein	NA	A0A1P8CWK6	Bacillus_phage	43.5	3.4e-21
WP_001027143.1|701835_702024_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000202390.1|702136_702739_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000670307.1|702735_703827_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_000603970.1|703830_704562_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000593436.1|704530_705439_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	25.9	3.1e-22
>prophage 52
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	709822	714127	2853973	head	Staphylococcus_phage(80.0%)	8	NA	NA
WP_000899334.1|709822_710059_-|head	phage head morphogenesis protein	head	Q4ZE35	Staphylococcus_virus	70.6	2.3e-22
WP_000956747.1|710104_710356_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000477492.1|710483_710588_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000006110.1|711098_711284_-	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
WP_001788716.1|711708_711819_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001002340.1|712518_712725_-	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	59.7	1.3e-13
WP_001795785.1|713018_713243_-	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	72.5	5.0e-19
WP_001791958.1|713929_714127_-	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	48.4	1.1e-09
>prophage 53
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	719196	719673	2853973		Fowlpox_virus(100.0%)	1	NA	NA
WP_000448078.1|719196_719673_+	glutathione peroxidase	NA	Q70H87	Fowlpox_virus	38.0	1.2e-22
>prophage 54
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	725615	732097	2853973		Acanthocystis_turfacea_Chlorella_virus(33.33%)	4	NA	NA
WP_001103743.1|725615_726434_-	aquaporin family protein	NA	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	35.1	2.4e-26
WP_001077635.1|726908_727451_-	glycerol-3-phosphate responsive antiterminator	NA	NA	NA	NA	NA
WP_000516269.1|727456_729466_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	30.0	4.8e-60
WP_000073352.1|729478_732097_-	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	23.7	8.5e-41
>prophage 55
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	741511	742555	2853973		Bacillus_phage(100.0%)	1	NA	NA
WP_000368166.1|741511_742555_-	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	69.2	9.3e-124
>prophage 56
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	746753	752294	2853973		Bacillus_virus(33.33%)	4	NA	NA
WP_000664775.1|746753_748040_-	insulinase family protein	NA	G3MBJ8	Bacillus_virus	28.4	7.9e-16
WP_000089941.1|748039_749305_-	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	26.8	1.2e-40
WP_001293306.1|749335_750049_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001811366.1|750053_752294_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	47.7	6.9e-84
>prophage 57
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	757434	769247	2853973	tRNA	Klosneuvirus(33.33%)	9	NA	NA
WP_000864190.1|757434_758406_-	riboflavin biosynthesis protein RibF	NA	A0A1V0SJE1	Klosneuvirus	32.1	1.7e-07
WP_000282298.1|758420_759338_-|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_000097322.1|759506_759857_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_000043635.1|760242_762360_-	translation initiation factor IF-2	NA	E3T4N3	Cafeteria_roenbergensis_virus	25.1	2.4e-25
WP_000020853.1|762364_762682_-	YlxQ family RNA-binding protein	NA	NA	NA	NA	NA
WP_000727423.1|762678_762963_-	YlxR family protein	NA	NA	NA	NA	NA
WP_000097460.1|762983_764159_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_000036633.1|764179_764647_-	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_001801936.1|764936_769247_-	DNA polymerase III subunit alpha	NA	A0A0A8WJ41	Clostridium_phage	41.2	3.5e-23
>prophage 58
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	773520	774291	2853973		Flavobacterium_phage(100.0%)	1	NA	NA
WP_000473699.1|773520_774291_-	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	41.5	7.3e-25
>prophage 59
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	779070	792744	2853973	tRNA,protease	Erwinia_phage(16.67%)	10	NA	NA
WP_000379054.1|779070_780474_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A1B2IDZ7	Erwinia_phage	25.6	4.9e-27
WP_000072681.1|780539_781085_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_001015601.1|781081_781978_-	tyrosine recombinase XerC	NA	A0A0K2CP59	Brevibacillus_phage	31.9	3.6e-31
WP_000195254.1|782395_783703_-|tRNA	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	tRNA	NA	NA	NA	NA
WP_160199658.1|783858_785934_-	type I DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	39.2	2.3e-105
WP_000672869.1|787154_788399_-	FemA/FemB family glycyltransferase FmhC	NA	NA	NA	NA	NA
WP_001041666.1|788426_789545_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A1W6JQB6	Staphylococcus_phage	61.1	9.5e-50
WP_000110253.1|789771_790680_-	succinate--CoA ligase subunit alpha	NA	A0A2K9L1S3	Tupanvirus	33.2	3.0e-17
WP_001020801.1|790701_791868_-	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA	NA
WP_000176393.1|791976_792744_-	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	44.1	2.5e-25
>prophage 60
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	806128	808378	2853973		Acanthamoeba_polyphaga_mimivirus(33.33%)	3	NA	NA
WP_000043237.1|806128_806860_-	ribonuclease III	NA	A0A0G2Y7P9	Acanthamoeba_polyphaga_mimivirus	28.8	5.9e-24
WP_000426914.1|806975_807209_-	acyl carrier protein	NA	E3SSM9	Prochlorococcus_phage	63.3	1.6e-07
WP_000167269.1|807643_808378_-	3-oxoacyl-[acyl-carrier-protein] reductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	30.3	3.1e-17
>prophage 61
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	818748	820743	2853973		Moumouvirus(100.0%)	1	NA	NA
WP_000579563.1|818748_820743_-	serine/threonine protein kinase Stk1	NA	M1PCM5	Moumouvirus	34.8	5.5e-24
>prophage 62
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	823890	824826	2853973	tRNA	Prochlorococcus_phage(100.0%)	1	NA	NA
WP_000161291.1|823890_824826_-|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	28.0	4.7e-10
>prophage 63
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	829838	832095	2853973		Methanothermobacter_phage(50.0%)	3	NA	NA
WP_000722165.1|829838_831038_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	32.9	1.2e-42
WP_000933956.1|831253_831472_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_000368226.1|831471_832095_-	guanylate kinase	NA	A0A143DIC6	Abalone_herpesvirus	34.1	1.0e-21
>prophage 64
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	835409	836021	2853973		Pandoravirus(100.0%)	1	NA	NA
WP_001040248.1|835409_836021_-	orotate phosphoribosyltransferase	NA	S4VS55	Pandoravirus	33.8	1.6e-27
>prophage 65
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	839988	844599	2853973		Halovirus(33.33%)	4	NA	NA
WP_001190913.1|839988_841089_-	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	36.7	5.6e-63
WP_000767028.1|841090_842365_-	dihydroorotase	NA	NA	NA	NA	NA
WP_001016166.1|842382_843264_-	aspartate carbamoyltransferase	NA	A0A1J0F9B8	Only_Syngen_Nebraska_virus	33.9	4.6e-31
WP_001178619.1|843291_844599_-	uracil permease	NA	Q9KX94	Enterobacteria_phage	34.0	3.3e-54
>prophage 66
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	849063	851817	2853973	tRNA	Orpheovirus(100.0%)	1	NA	NA
WP_000384691.1|849063_851817_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A2I2L3Y0	Orpheovirus	28.0	3.6e-90
>prophage 67
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	871400	871589	2853973		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001245796.1|871400_871589_-	hypothetical protein	NA	A0A0K1LL29	Staphylococcus_phage	85.2	2.5e-19
>prophage 68
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	880605	966242	2853973	capsid,transposase,holin,plate,tail,portal,terminase,head,tRNA	Staphylococcus_phage(67.65%)	106	NA	NA
WP_001802045.1|880605_880830_-	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	71.4	5.6e-18
WP_000765708.1|880786_880933_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000857488.1|881605_882565_+	beta-channel forming cytolysin	NA	A0A2H4PQH7	Staphylococcus_phage	30.3	7.4e-35
WP_001557163.1|882723_884043_-|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
WP_000231632.1|884561_884795_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001032817.1|885416_885602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000669537.1|886367_886718_-	complement inhibitor SCIN-B	NA	NA	NA	NA	NA
WP_000791581.1|886867_887365_-	fibrinogen-binding protein	NA	NA	NA	NA	NA
WP_000584398.1|887624_888131_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000739564.1|888800_889202_+	formyl peptide receptor-like 1 inhibitory protein	NA	NA	NA	NA	NA
WP_000739210.1|889570_889900_-	complement convertase inhibitor Ecb	NA	NA	NA	NA	NA
WP_001791787.1|890093_890261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000049484.1|890388_890892_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_000659319.1|890884_891472_-	XTP/dITP diphosphatase	NA	NA	NA	NA	NA
WP_001039659.1|891483_892284_-	glutamate racemase	NA	NA	NA	NA	NA
WP_000139712.1|892519_893335_-	succinate dehydrogenase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_000818278.1|893334_895101_-	succinate dehydrogenase flavoprotein subunit	NA	NA	NA	NA	NA
WP_000079317.1|895152_895767_-	succinate dehydrogenase cytochrome B558	NA	NA	NA	NA	NA
WP_000390524.1|896090_897872_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_001788625.1|898037_898133_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001018928.1|898195_898510_-	thioredoxin	NA	A0A1X9I9P5	Staphylococcus_phage	46.6	6.6e-25
WP_001249272.1|898682_901031_-	endonuclease MutS2	NA	F2QAF8	Phaeocystis_pouchetii_virus	25.1	3.2e-15
WP_000161938.1|901040_902753_-	DNA polymerase/3'-5' exonuclease PolX	NA	A0A2H4UV14	Bodo_saltans_virus	24.0	6.8e-15
WP_000234068.1|902825_903347_-	CvpA family protein	NA	NA	NA	NA	NA
WP_000046704.1|903347_903614_-	cell division protein ZapA	NA	NA	NA	NA	NA
WP_001284282.1|903983_904922_+	ribonuclease HIII	NA	NA	NA	NA	NA
WP_000908969.1|905219_907622_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_000003566.1|907621_908680_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2I2L4E3	Orpheovirus	35.5	1.9e-31
WP_000435374.1|909059_909800_-	RNA methyltransferase	NA	NA	NA	NA	NA
WP_001788617.1|910039_910147_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000670953.1|910183_910507_-	staphylobilin-forming heme oxygenase IsdG	NA	NA	NA	NA	NA
WP_001242427.1|910525_911260_-	class B sortase	NA	NA	NA	NA	NA
WP_001548422.1|911321_912290_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_001220199.1|912299_913178_-	heme ABC transporter substrate-binding protein IsdE	NA	NA	NA	NA	NA
WP_001246685.1|913174_914251_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000789821.1|914250_914934_-	heme uptake protein IsdC	NA	NA	NA	NA	NA
WP_000160859.1|915142_916195_+	LPXTG-anchored heme-scavenging protein IsdA	NA	NA	NA	NA	NA
WP_001041583.1|916397_918335_+	heme uptake protein IsdB	NA	NA	NA	NA	NA
WP_000971220.1|918504_918960_-	hypothetical protein	NA	B7T0L3	Staphylococcus_virus	100.0	2.7e-72
WP_000448197.1|918956_919544_-	hypothetical protein	NA	Q4ZBG7	Staphylococcus_virus	100.0	5.4e-97
WP_000920042.1|920079_920571_-	staphylokinase	NA	A0A075LYD3	Staphylococcus_phage	100.0	8.0e-86
WP_002955266.1|920761_921517_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	99.6	7.6e-152
WP_000611512.1|921528_921783_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_000398891.1|921840_922236_-	hypothetical protein	NA	A9CRD5	Staphylococcus_phage	98.5	1.0e-67
WP_160199659.1|922241_923480_-|plate	BppU family phage baseplate upper protein	plate	E0Y3M8	Staphylococcus_virus	99.8	7.7e-210
WP_000524015.1|923492_925391_-	CHAP domain-containing protein	NA	Q8SDT1	Staphylococcus_phage	99.4	0.0e+00
WP_000466778.1|925527_925827_-	DUF2951 domain-containing protein	NA	A0A0H4ITZ0	Staphylococcus_phage	100.0	7.6e-47
WP_000782200.1|925866_926040_-	XkdX family protein	NA	A0A0F6N3L7	Staphylococcus_phage	100.0	6.6e-27
WP_000705896.1|926043_926421_-	DUF2977 domain-containing protein	NA	A0A0F6N3G4	Staphylococcus_phage	100.0	1.5e-60
WP_000634521.1|926420_928244_-|plate	phage baseplate upper protein	plate	A0A0F6N3G2	Staphylococcus_phage	100.0	0.0e+00
WP_042856098.1|928243_930154_-	hypothetical protein	NA	A0A0F6N4K2	Staphylococcus_phage	99.4	0.0e+00
WP_160199660.1|930168_932070_-	peptidase	NA	I1W634	Staphylococcus_phage	99.7	0.0e+00
WP_160199661.1|932078_933026_-|tail	phage tail family protein	tail	Q8SDT6	Staphylococcus_phage	99.7	8.0e-183
WP_103146790.1|933038_936503_-	hypothetical protein	NA	B2ZYZ4	Staphylococcus_phage	95.4	2.9e-262
WP_000105584.1|936519_936864_-	hypothetical protein	NA	A0A0F6N3F7	Staphylococcus_phage	100.0	2.5e-57
WP_001100163.1|936893_937259_-	hypothetical protein	NA	Q8SDT9	Staphylococcus_phage	100.0	2.8e-59
WP_000002578.1|937321_937903_-|tail	phage major tail protein, TP901-1 family	tail	A0EWT6	Staphylococcus_virus	100.0	1.8e-105
WP_000188643.1|937921_938305_-	hypothetical protein	NA	E0Y3L5	Staphylococcus_virus	98.4	3.8e-67
WP_001017815.1|938316_938664_-	HK97 gp10 family phage protein	NA	A0A0F6N3F5	Staphylococcus_phage	100.0	4.1e-60
WP_001268314.1|938663_938966_-	hypothetical protein	NA	S4V7K8	Staphylococcus_phage	100.0	1.1e-50
WP_000209972.1|938962_939295_-|head,tail	phage head-tail connector protein	head,tail	A0A0F6N3F4	Staphylococcus_phage	99.1	2.1e-53
WP_001114086.1|939303_939591_-	hypothetical protein	NA	S4V6D9	Staphylococcus_phage	98.9	1.4e-45
WP_000438511.1|939612_940587_-|capsid	phage major capsid protein	capsid	E0Y3L0	Staphylococcus_virus	100.0	2.2e-183
WP_000354305.1|940600_941215_-	DUF4355 domain-containing protein	NA	I1W646	Staphylococcus_phage	100.0	2.9e-40
WP_000072207.1|941349_941520_-	hypothetical protein	NA	Q4ZDF2	Staphylococcus_virus	100.0	3.3e-23
WP_001133043.1|941592_942588_-|head	phage head morphogenesis protein	head	E0Y3K7	Staphylococcus_virus	100.0	3.4e-184
WP_000921883.1|942594_944130_-|portal	phage portal protein	portal	Q4ZDN2	Staphylococcus_virus	99.6	3.8e-291
WP_009560330.1|944140_945418_-|terminase	PBSX family phage terminase large subunit	terminase	A0EWS5	Staphylococcus_virus	99.8	1.1e-248
WP_009560332.1|945404_945845_-|terminase	terminase small subunit	terminase	E0Y3R8	Staphylococcus_virus	100.0	1.3e-74
WP_000162696.1|946032_946455_-	RinA family phage transcriptional activator	NA	S4V7K2	Staphylococcus_phage	100.0	1.6e-74
WP_009560343.1|946478_946625_-	hypothetical protein	NA	B2ZYX7	Staphylococcus_phage	97.9	3.7e-15
WP_078250159.1|946625_946814_-	transcriptional regulator	NA	Q77FU4	Staphylococcus_phage	98.4	2.0e-24
WP_001125016.1|946801_947002_-	hypothetical protein	NA	A0A2I6PF22	Staphylococcus_phage	98.5	5.3e-28
WP_000195782.1|946976_947165_-	DUF1381 domain-containing protein	NA	A0A2I6PDV0	Staphylococcus_phage	100.0	2.1e-26
WP_000185662.1|947201_947732_-	hypothetical protein	NA	B2ZYX2	Staphylococcus_phage	100.0	1.9e-96
WP_160199662.1|947724_947973_-	DUF1024 family protein	NA	Q4ZDW9	Staphylococcus_virus	95.1	1.3e-36
WP_031765535.1|947965_948331_-	hypothetical protein	NA	A7YGS3	Staphylococcus_virus	94.2	4.3e-60
WP_000695766.1|948327_948729_-	hypothetical protein	NA	S4V6D5	Staphylococcus_phage	99.2	2.1e-68
WP_000131366.1|948741_948984_-	hypothetical protein	NA	A0EWX8	Staphylococcus_phage	100.0	3.9e-41
WP_000101274.1|948987_949356_-	hypothetical protein	NA	W5RAK8	Staphylococcus_phage	100.0	8.2e-51
WP_000401960.1|949368_949773_-	RusA family crossover junction endodeoxyribonuclease	NA	A0EWX6	Staphylococcus_phage	100.0	1.9e-72
WP_000338528.1|949781_950000_-	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
WP_000148301.1|950006_950891_-	DnaD domain protein	NA	S4V6D4	Staphylococcus_phage	95.9	3.1e-136
WP_000934770.1|950920_951391_-	single-stranded DNA-binding protein	NA	A0A0E3T9H6	Staphylococcus_phage	99.4	4.8e-80
WP_071621397.1|951391_952009_-	MBL fold metallo-hydrolase	NA	S4SWA4	Staphylococcus_phage	100.0	9.1e-87
WP_000138481.1|952089_953010_-	recombinase	NA	A0A1V0E5D7	Staphylococcus_phage	100.0	1.0e-166
WP_000700562.1|953011_954955_-	AAA family ATPase	NA	A0A2I6PDH3	Staphylococcus_phage	99.2	0.0e+00
WP_001205732.1|954963_955227_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000291090.1|955235_955496_-	DUF1108 family protein	NA	Q4ZDA1	Staphylococcus_virus	100.0	1.2e-43
WP_000066026.1|955589_955751_-	DUF1270 family protein	NA	C8CGY5	Staphylococcus_phage	100.0	2.5e-20
WP_000395457.1|955930_956161_+	hypothetical protein	NA	R4IG40	Staphylococcus_phage	100.0	2.3e-35
WP_000390105.1|956364_956559_-	hypothetical protein	NA	E9LT75	Staphylococcus_phage	100.0	1.2e-29
WP_001148566.1|956575_957364_-	phage antirepressor KilAC domain-containing protein	NA	A0EWP1	Staphylococcus_virus	100.0	4.2e-145
WP_001198672.1|957379_957598_-	helix-turn-helix transcriptional regulator	NA	A0A2H4PQQ0	Staphylococcus_phage	100.0	1.7e-35
WP_000358224.1|957739_958459_+	helix-turn-helix transcriptional regulator	NA	A0A2H4PQQ2	Staphylococcus_phage	100.0	1.3e-132
WP_000392186.1|958494_959427_+	hypothetical protein	NA	A0EWN8	Staphylococcus_virus	100.0	3.9e-174
WP_000337826.1|959406_959586_-	hypothetical protein	NA	A0EWN7	Staphylococcus_virus	100.0	8.3e-25
WP_000861313.1|959694_961080_+	recombinase family protein	NA	I1W625	Staphylococcus_phage	100.0	2.5e-265
WP_000290472.1|961196_961370_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_000872158.1|961449_962007_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_000843611.1|962133_963273_+	nucleotidyltransferase	NA	NA	NA	NA	NA
WP_000401377.1|963334_963817_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	46.2	2.6e-28
WP_001263796.1|963818_964361_-	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_000814565.1|964430_964820_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001049150.1|964822_965077_-	YlbG family protein	NA	NA	NA	NA	NA
WP_000757575.1|965315_966242_+	glycerophosphodiester phosphodiesterase	NA	M1I1K8	Paramecium_bursaria_Chlorella_virus	26.2	2.2e-12
>prophage 69
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	977759	979607	2853973		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_000182653.1|977759_979607_-	translational GTPase TypA	NA	A0A2K5B2A5	Erysipelothrix_phage	26.2	1.8e-21
>prophage 70
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	987739	996572	2853973		Mycoplasma_phage(25.0%)	9	NA	NA
WP_000433551.1|987739_988834_-	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	44.3	1.4e-37
WP_001020625.1|988846_989386_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000455597.1|989529_989805_-	UPF0223 family protein	NA	NA	NA	NA	NA
WP_000260117.1|989972_991379_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	29.1	1.2e-46
WP_000863439.1|991382_992675_-	2-oxo acid dehydrogenase subunit E2	NA	NA	NA	NA	NA
WP_000068176.1|992765_993743_-	alpha-ketoacid dehydrogenase subunit beta	NA	NA	NA	NA	NA
WP_000035320.1|993746_994859_-	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	NA	A0A0K0KW14	Prochlorococcus_phage	27.8	1.4e-05
WP_000668336.1|995029_995656_-	cell-wall-binding lipoprotein	NA	NA	NA	NA	NA
WP_000957037.1|996020_996572_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.0	1.6e-13
>prophage 71
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1002584	1006964	2853973		Bacillus_virus(50.0%)	5	NA	NA
WP_001289618.1|1002584_1002818_+	glutaredoxin family protein	NA	G3MBF0	Bacillus_virus	38.7	8.4e-09
WP_000040051.1|1003054_1004773_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_000437472.1|1004775_1005042_-	phosphocarrier protein HPr	NA	NA	NA	NA	NA
WP_000505966.1|1005195_1005738_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000685067.1|1005791_1006964_-	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	42.8	4.0e-75
>prophage 72
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1010395	1025157	2853973		Prochlorococcus_phage(22.22%)	14	NA	NA
WP_000921965.1|1010395_1011796_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	26.3	1.1e-10
WP_000273253.1|1011788_1012595_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_001101899.1|1012861_1014109_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_000709277.1|1014130_1015609_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	51.8	3.2e-77
WP_000238669.1|1015623_1016190_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
WP_000030811.1|1016192_1017221_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
WP_000483720.1|1017213_1018698_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	1.9e-45
WP_000032740.1|1018676_1020866_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	3.5e-141
WP_000666806.1|1020858_1021530_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_000848350.1|1021531_1021795_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000174053.1|1021794_1022499_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_001010413.1|1022502_1023627_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000861573.1|1023613_1024096_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	8.0e-22
WP_000225836.1|1024296_1025157_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	38.8	4.4e-39
>prophage 73
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1035610	1039357	2853973		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001074534.1|1035610_1039357_+	bifunctional autolysin	NA	A0A1J0MFB0	Staphylococcus_phage	37.6	1.1e-54
>prophage 74
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1043023	1044034	2853973		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000676537.1|1043023_1044034_+	Glu-specific serine endopeptidase SspA	NA	A0A2H4PQP7	Staphylococcus_phage	32.3	6.2e-16
>prophage 75
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1052339	1056060	2853973		Enterococcus_phage(50.0%)	7	NA	NA
WP_001788574.1|1052339_1052630_+	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	38.0	7.5e-07
WP_001790177.1|1052693_1052825_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001081351.1|1052870_1053830_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000766008.1|1054317_1054674_+	DoxX family protein	NA	NA	NA	NA	NA
WP_001792054.1|1054762_1054900_-	poly(glycerol-phosphate) alpha-glucosyltransferase	NA	NA	NA	NA	NA
WP_001795266.1|1055040_1055331_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000571167.1|1055418_1056060_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.0	1.7e-19
>prophage 76
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1066254	1071465	2853973	protease	Pithovirus(33.33%)	3	NA	NA
WP_001795272.1|1066254_1068579_-|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.8e-11
WP_000928413.1|1068797_1069601_-	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_001049950.1|1069902_1071465_-	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	1.7e-36
>prophage 77
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1090397	1092206	2853973		Streptococcus_phage(100.0%)	1	NA	NA
WP_000082725.1|1090397_1092206_-	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.5	5.5e-47
>prophage 78
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1098018	1099988	2853973		Bacillus_virus(100.0%)	2	NA	NA
WP_000427767.1|1098018_1098999_-	dipeptide ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	1.3e-15
WP_001067052.1|1099001_1099988_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	29.6	1.4e-15
>prophage 79
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1103639	1105653	2853973		Organic_Lake_phycodnavirus(50.0%)	2	NA	NA
WP_000786734.1|1103639_1104581_-	ATP-binding cassette domain-containing protein	NA	F2Y1V6	Organic_Lake_phycodnavirus	26.9	1.6e-05
WP_000140050.1|1104570_1105653_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.8	8.4e-19
>prophage 80
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1114244	1121054	2853973		Micromonas_sp._RCC1109_virus(33.33%)	4	NA	NA
WP_000619360.1|1114244_1115390_-	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	26.0	1.5e-05
WP_001047069.1|1115499_1116369_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000353954.1|1116427_1119037_-	ATP-dependent chaperone ClpB	NA	A0A223W0B1	Agrobacterium_phage	34.3	5.5e-117
WP_001044230.1|1119239_1121054_-	O-acetyltransferase	NA	B5WZU0	Pseudomonas_phage	33.9	6.7e-37
>prophage 81
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1126173	1129827	2853973		Bacillus_phage(100.0%)	1	NA	NA
WP_000154921.1|1126173_1129827_-	helicase-exonuclease AddAB subunit AddA	NA	A7KV33	Bacillus_phage	24.5	2.0e-24
>prophage 82
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1139981	1147162	2853973		Staphylococcus_phage(33.33%)	6	NA	NA
WP_000185319.1|1139981_1140911_+	glycerophosphodiester phosphodiesterase	NA	A0A220BYK6	Staphylococcus_phage	37.9	3.7e-39
WP_000138487.1|1141437_1142682_-	NAD-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
WP_000167309.1|1142790_1143981_-	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	29.7	1.0e-33
WP_000838029.1|1144288_1145416_-	NADH-dependent flavin oxidoreductase	NA	NA	NA	NA	NA
WP_001067294.1|1145776_1146154_-	S1 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_000035063.1|1146568_1147162_-	peptidyl-prolyl cis-trans isomerase	NA	A0A076FI46	Aureococcus_anophage	41.3	1.1e-25
>prophage 83
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1157082	1160710	2853973		Mycoplasma_phage(50.0%)	3	NA	NA
WP_001009692.1|1157082_1158558_-	cytosol aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	34.9	4.5e-47
WP_000046076.1|1158688_1159897_-	NADH dehydrogenase	NA	NA	NA	NA	NA
WP_001143495.1|1160350_1160710_-	iron-sulfur cluster assembly accessory protein	NA	A0A2H4N7M3	Lake_Baikal_phage	38.6	2.7e-14
>prophage 84
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1164753	1167422	2853973		Pseudomonas_phage(50.0%)	2	NA	NA
WP_000613541.1|1164753_1165968_-	PG:teichoic acid D-alanyltransferase DltB	NA	A0A125RNP0	Pseudomonas_phage	26.1	8.5e-20
WP_000129659.1|1165964_1167422_-	D-alanine--poly(phosphoribitol) ligase subunit DltA	NA	A0A2K9L3I8	Tupanvirus	28.5	2.6e-39
>prophage 85
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1170648	1229807	2853973	transposase,holin,plate,tail,portal,terminase,integrase,head,capsid	Staphylococcus_phage(72.22%)	85	1194770:1194786	1229423:1229439
WP_001557163.1|1170648_1171968_-|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
WP_000598444.1|1172173_1172557_-	YutD family protein	NA	NA	NA	NA	NA
WP_000201875.1|1172686_1173604_-	lipoyl synthase	NA	NA	NA	NA	NA
WP_001241246.1|1173687_1175007_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000927632.1|1175033_1175861_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_000608129.1|1175873_1176722_-	DUF72 domain-containing protein	NA	NA	NA	NA	NA
WP_016170465.1|1176769_1176853_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000267236.1|1177063_1178131_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_160199665.1|1178144_1179185_-	DUF21 domain-containing protein	NA	NA	NA	NA	NA
WP_000274029.1|1179549_1179864_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000382163.1|1180693_1180894_-	hypothetical protein	NA	W5R9N2	Staphylococcus_phage	100.0	3.7e-29
WP_000139423.1|1180880_1180991_-	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	100.0	1.7e-12
WP_001788502.1|1181061_1181214_-	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	100.0	3.1e-20
WP_001035620.1|1181588_1182146_+	DUF4888 domain-containing protein	NA	A0A0F6N4L1	Staphylococcus_phage	100.0	7.4e-96
WP_001141517.1|1182205_1183618_-	CHAP domain-containing protein	NA	A0A0F6N3N1	Staphylococcus_phage	100.0	5.8e-286
WP_000351119.1|1183604_1183880_-|holin	phage holin	holin	A0A0F6N3M0	Staphylococcus_phage	100.0	8.6e-45
WP_000398868.1|1183935_1184331_-	hypothetical protein	NA	A1KXB6	Staphylococcus_virus	100.0	1.6e-68
WP_160199659.1|1184336_1185575_-|plate	BppU family phage baseplate upper protein	plate	E0Y3M8	Staphylococcus_virus	99.8	7.7e-210
WP_000524022.1|1185587_1187486_-	CHAP domain-containing protein	NA	A0EX80	Staphylococcus_virus	99.7	0.0e+00
WP_000466778.1|1187622_1187922_-	DUF2951 domain-containing protein	NA	A0A0H4ITZ0	Staphylococcus_phage	100.0	7.6e-47
WP_000782200.1|1187961_1188135_-	XkdX family protein	NA	A0A0F6N3L7	Staphylococcus_phage	100.0	6.6e-27
WP_000705896.1|1188138_1188516_-	DUF2977 domain-containing protein	NA	A0A0F6N3G4	Staphylococcus_phage	100.0	1.5e-60
WP_000259619.1|1188515_1190339_-|plate	BppU family phage baseplate upper protein	plate	A1KX42	Staphylococcus_virus	99.2	3.9e-295
WP_000369017.1|1190338_1192249_-	hypothetical protein	NA	Q4ZDD6	Staphylococcus_virus	98.9	0.0e+00
WP_160199660.1|1192263_1194165_-	peptidase	NA	I1W634	Staphylococcus_phage	99.7	0.0e+00
WP_160199661.1|1194173_1195121_-|tail	phage tail family protein	tail	Q8SDT6	Staphylococcus_phage	99.7	8.0e-183
1194770:1194786	attL	TGTTTTTATCTAATTTC	NA	NA	NA	NA
WP_103146790.1|1195133_1198598_-	hypothetical protein	NA	B2ZYZ4	Staphylococcus_phage	95.4	2.9e-262
WP_000105584.1|1198614_1198959_-	hypothetical protein	NA	A0A0F6N3F7	Staphylococcus_phage	100.0	2.5e-57
WP_001100163.1|1198988_1199354_-	hypothetical protein	NA	Q8SDT9	Staphylococcus_phage	100.0	2.8e-59
WP_000002578.1|1199416_1199998_-|tail	phage major tail protein, TP901-1 family	tail	A0EWT6	Staphylococcus_virus	100.0	1.8e-105
WP_000188643.1|1200016_1200400_-	hypothetical protein	NA	E0Y3L5	Staphylococcus_virus	98.4	3.8e-67
WP_001017815.1|1200411_1200759_-	HK97 gp10 family phage protein	NA	A0A0F6N3F5	Staphylococcus_phage	100.0	4.1e-60
WP_001268314.1|1200758_1201061_-	hypothetical protein	NA	S4V7K8	Staphylococcus_phage	100.0	1.1e-50
WP_000209972.1|1201057_1201390_-|head,tail	phage head-tail connector protein	head,tail	A0A0F6N3F4	Staphylococcus_phage	99.1	2.1e-53
WP_001114086.1|1201398_1201686_-	hypothetical protein	NA	S4V6D9	Staphylococcus_phage	98.9	1.4e-45
WP_000438511.1|1201707_1202682_-|capsid	phage major capsid protein	capsid	E0Y3L0	Staphylococcus_virus	100.0	2.2e-183
WP_000392151.1|1202695_1203316_-	DUF4355 domain-containing protein	NA	S4V984	Staphylococcus_phage	98.5	1.7e-69
WP_000072208.1|1203424_1203595_-	hypothetical protein	NA	A0A0F6N3E9	Staphylococcus_phage	100.0	1.5e-23
WP_001133044.1|1203667_1204663_-|head	phage head morphogenesis protein	head	A0A0F6N3F1	Staphylococcus_phage	100.0	2.0e-184
WP_000909970.1|1204669_1206208_-|portal	phage portal protein	portal	A0A0F6N4I8	Staphylococcus_phage	100.0	2.4e-293
WP_000273011.1|1206218_1207514_-|terminase	PBSX family phage terminase large subunit	terminase	A0A0F6N3L3	Staphylococcus_phage	100.0	3.0e-257
WP_001038244.1|1207516_1208011_-|terminase	terminase small subunit	terminase	A0A0F6N3K6	Staphylococcus_phage	100.0	7.8e-89
WP_000162701.1|1208198_1208621_-	RinA family phage transcriptional activator	NA	A0A0F6N3E5	Staphylococcus_phage	100.0	1.2e-74
WP_000990004.1|1208686_1208791_-	hypothetical protein	NA	B2ZYX7	Staphylococcus_phage	100.0	7.0e-08
WP_000595257.1|1208791_1208965_-	transcriptional activator RinB	NA	Q4ZBK0	Staphylococcus_phage	100.0	6.4e-22
WP_000608278.1|1208957_1209194_-	hypothetical protein	NA	Q4ZDP0	Staphylococcus_virus	100.0	2.8e-36
WP_001072795.1|1209186_1209390_-	hypothetical protein	NA	A0A0N9BAX5	Staphylococcus_phage	100.0	5.2e-31
WP_000132921.1|1209386_1209581_-	hypothetical protein	NA	A0A2I6PEC2	Staphylococcus_phage	100.0	6.0e-29
WP_000617154.1|1209577_1209784_-	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	72.1	1.0e-18
WP_000185647.1|1209820_1210354_-	dUTP pyrophosphatase	NA	A1KX16	Staphylococcus_virus	99.4	2.4e-96
WP_072471035.1|1210346_1210541_-	hypothetical protein	NA	A0A0E3T9L7	Staphylococcus_phage	87.5	8.5e-23
WP_001065060.1|1210503_1210758_-	DUF1024 family protein	NA	A1KX15	Staphylococcus_virus	97.6	2.5e-38
WP_001557190.1|1210750_1211122_-	hypothetical protein	NA	A0A0F6N3K4	Staphylococcus_phage	100.0	3.6e-54
WP_000131376.1|1211130_1211373_-	hypothetical protein	NA	A0A0F6N3E1	Staphylococcus_phage	98.8	1.9e-40
WP_000029376.1|1211376_1211733_-	hypothetical protein	NA	A0A0F6N3E3	Staphylococcus_phage	100.0	6.5e-61
WP_000101252.1|1211860_1212166_-	hypothetical protein	NA	A0A0F6N4H9	Staphylococcus_phage	100.0	1.7e-49
WP_001187243.1|1212166_1212352_-	DUF3113 family protein	NA	A0A0F6N3K7	Staphylococcus_phage	100.0	1.1e-27
WP_000049794.1|1212356_1212761_-	DUF1064 domain-containing protein	NA	A1KX76	Staphylococcus_virus	100.0	9.6e-69
WP_001123695.1|1212770_1212992_-	DUF3269 family protein	NA	A0A0H3U2V4	Staphylococcus_phage	100.0	2.2e-35
WP_000256589.1|1213004_1213163_-	hypothetical protein	NA	A0A2H4PQI7	Staphylococcus_phage	100.0	4.5e-22
WP_000803062.1|1213156_1213936_-	ATP-binding protein	NA	G4KNP1	Staphylococcus_phage	100.0	3.8e-146
WP_000414755.1|1214782_1215064_+	hypothetical protein	NA	A0A1W6JPU7	Staphylococcus_phage	100.0	2.6e-49
WP_001124438.1|1215202_1215877_-	hypothetical protein	NA	R4IH15	Staphylococcus_phage	96.9	1.4e-125
WP_000934385.1|1215890_1216319_-	single-stranded DNA-binding protein	NA	B2ZYV4	Staphylococcus_phage	100.0	3.9e-60
WP_000139720.1|1216318_1216942_-	DUF1071 domain-containing protein	NA	A0A2H4PQQ6	Staphylococcus_phage	100.0	1.4e-114
WP_000815401.1|1216934_1217156_-	DUF2483 domain-containing protein	NA	A7TWM6	Staphylococcus_phage	100.0	3.2e-34
WP_000291090.1|1217165_1217426_-	DUF1108 family protein	NA	Q4ZDA1	Staphylococcus_virus	100.0	1.2e-43
WP_000165363.1|1217430_1217733_-	DUF2482 family protein	NA	A0A0F6N3N3	Staphylococcus_phage	100.0	1.4e-48
WP_000066011.1|1217826_1217988_-	DUF1270 domain-containing protein	NA	Q4ZAZ7	Staphylococcus_virus	100.0	2.5e-20
WP_000977381.1|1217980_1218202_-	hypothetical protein	NA	A0A0F6N3I2	Staphylococcus_phage	100.0	1.5e-31
WP_001094943.1|1218215_1218665_-	hypothetical protein	NA	A1KWZ2	Staphylococcus_virus	100.0	3.0e-79
WP_000187184.1|1218704_1218929_-	hypothetical protein	NA	A0A0F6N4M2	Staphylococcus_phage	100.0	3.2e-34
WP_001002757.1|1218929_1219697_-	phage antirepressor Ant	NA	A0A0F6N3N8	Staphylococcus_phage	100.0	1.1e-142
WP_000108122.1|1219696_1219891_-	helix-turn-helix transcriptional regulator	NA	A0A0F6N3M9	Staphylococcus_phage	100.0	1.1e-25
WP_001055143.1|1220153_1220486_+	helix-turn-helix transcriptional regulator	NA	R4IH08	Staphylococcus_phage	100.0	4.1e-57
WP_000775187.1|1220502_1221177_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A0F6N3H6	Staphylococcus_phage	100.0	4.9e-126
WP_000661437.1|1221204_1221930_+	hypothetical protein	NA	A0A0F6N4L7	Staphylococcus_phage	100.0	9.9e-125
WP_000392186.1|1221961_1222894_+	hypothetical protein	NA	A0EWN8	Staphylococcus_virus	100.0	3.9e-174
WP_000337826.1|1222873_1223053_-	hypothetical protein	NA	A0EWN7	Staphylococcus_virus	100.0	8.3e-25
WP_001145726.1|1223165_1224215_+|integrase	site-specific integrase	integrase	A1KWY3	Staphylococcus_virus	99.7	4.5e-203
WP_001074405.1|1224282_1225680_-	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
WP_001010508.1|1225830_1226295_-	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA	NA
WP_000807663.1|1226284_1227526_-	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.8	8.2e-111
WP_000205567.1|1227640_1228948_-	Fe-S cluster assembly protein SufD	NA	NA	NA	NA	NA
WP_000168845.1|1229045_1229807_-	Fe-S cluster assembly ATPase SufC	NA	A0A1V0SE00	Indivirus	23.3	4.4e-06
1229423:1229439	attR	TGTTTTTATCTAATTTC	NA	NA	NA	NA
>prophage 86
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1233294	1234320	2853973		Planktothrix_phage(100.0%)	1	NA	NA
WP_000571213.1|1233294_1234320_-	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.8	9.4e-28
>prophage 87
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1237636	1242814	2853973		Streptococcus_phage(50.0%)	8	NA	NA
WP_000589549.1|1237636_1237993_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	46.6	4.7e-19
WP_001147952.1|1238136_1238457_+	thioredoxin family protein	NA	A0A1X9I9P5	Staphylococcus_phage	36.4	3.1e-06
WP_000422908.1|1238607_1239147_-	nitroreductase	NA	NA	NA	NA	NA
WP_000150011.1|1239229_1239946_-	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	30.1	1.5e-16
WP_000974460.1|1240093_1240516_+	organic hydroperoxide resistance protein	NA	NA	NA	NA	NA
WP_000569884.1|1240914_1241409_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000255551.1|1241563_1242181_+	amino acid transporter	NA	NA	NA	NA	NA
WP_001802951.1|1242253_1242814_-	histidine phosphatase family protein	NA	A0A1X9IGJ2	Lactococcus_phage	40.4	3.8e-31
>prophage 88
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1246214	1247458	2853973		Lactococcus_phage(50.0%)	2	NA	NA
WP_001059082.1|1246214_1246415_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	70.8	1.4e-20
WP_000141557.1|1246771_1247458_-	thermonuclease family protein	NA	A0A1P8CWK6	Bacillus_phage	54.2	1.7e-33
>prophage 89
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1256521	1265399	2853973		Staphylococcus_phage(50.0%)	9	NA	NA
WP_000757397.1|1256521_1257250_+	DUF5067 domain-containing protein	NA	H9A0X8	Staphylococcus_phage	37.5	1.3e-18
WP_001057759.1|1257442_1257589_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001058299.1|1257604_1257928_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001085183.1|1259249_1259714_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	98.7	1.6e-80
WP_001050048.1|1259735_1262108_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	38.8	4.3e-92
WP_001165959.1|1262141_1262882_-	prolyl oligopeptidase family serine peptidase	NA	NA	NA	NA	NA
WP_000556760.1|1262997_1263231_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_000785252.1|1263297_1263756_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001121760.1|1264094_1265399_-	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	80.7	6.7e-196
>prophage 90
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1274625	1280556	2853973		Streptococcus_phage(40.0%)	5	NA	NA
WP_001049165.1|1274625_1275213_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	55.3	8.2e-53
WP_000006551.1|1275776_1276721_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	40.6	3.1e-54
WP_001248939.1|1276831_1277827_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	41.9	4.8e-53
WP_000369722.1|1277823_1278735_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	36.1	1.1e-08
WP_000134963.1|1279620_1280556_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	49.2	2.9e-84
>prophage 91
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1285003	1287850	2853973		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_000662677.1|1285003_1287850_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	57.2	0.0e+00
>prophage 92
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1291168	1292008	2853973		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_160199666.1|1291168_1292008_-	CHAP domain-containing protein	NA	A0A2H4J675	uncultured_Caudovirales_phage	41.3	4.5e-12
>prophage 93
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1298086	1303792	2853973		Streptococcus_phage(66.67%)	5	NA	NA
WP_001557172.1|1298086_1299169_-	DEAD/DEAH box helicase	NA	A0A1X9I5S6	Streptococcus_phage	35.2	9.9e-44
WP_000686344.1|1299532_1300399_-	DegV family protein	NA	NA	NA	NA	NA
WP_000192949.1|1300542_1301184_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	47.7	5.3e-37
WP_000258150.1|1301348_1302404_-	undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	NA	NA	NA	NA	NA
WP_000460983.1|1302721_1303792_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	33.5	1.3e-16
>prophage 94
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1314591	1338064	2853973		uncultured_Caudovirales_phage(35.71%)	19	NA	NA
WP_000616840.1|1314591_1315353_-	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	6.5e-18
WP_001245577.1|1315349_1316306_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000876318.1|1316292_1317264_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_000499195.1|1317302_1317458_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000562498.1|1317638_1318610_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000855514.1|1318727_1320833_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000692521.1|1320795_1321194_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_001068501.1|1321994_1322861_+	DMT family transporter	NA	NA	NA	NA	NA
WP_000930014.1|1322880_1323381_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_000193751.1|1323721_1325227_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_031760357.1|1325304_1325406_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000429006.1|1325496_1326414_+	lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.1e-07
WP_000197262.1|1327292_1327835_-	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000663030.1|1328173_1329232_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
WP_000180991.1|1329471_1330986_-	ABC transporter permease/substrate-binding protein	NA	NA	NA	NA	NA
WP_000589248.1|1330978_1331956_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.3	7.1e-25
WP_000983677.1|1332177_1333959_-	DNA helicase RecQ	NA	A0A2P1EM61	Moumouvirus	37.0	6.5e-77
WP_000525106.1|1333970_1335854_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	30.6	2.0e-55
WP_000098285.1|1336123_1338064_-	polyglycerol-phosphate lipoteichoic acid synthase LtaS	NA	W6LM83	Streptococcus_phage	39.5	1.3e-110
>prophage 95
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1341203	1351050	2853973		Pandoravirus(12.5%)	12	NA	NA
WP_001217796.1|1341203_1342355_-	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	35.7	6.0e-23
WP_000604514.1|1342338_1342932_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_000446724.1|1343282_1343951_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000941336.1|1343952_1344372_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_001062972.1|1344375_1345089_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000604990.1|1345187_1345772_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001093562.1|1346051_1346492_+	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_001037807.1|1346834_1347308_+	DoxX family protein	NA	NA	NA	NA	NA
WP_000149344.1|1347282_1347969_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000244415.1|1347968_1349024_+	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000702781.1|1349095_1350079_-	glycosyltransferase family 2 protein	NA	A0A192Y8W7	Salmonella_phage	43.3	1.5e-62
WP_000931238.1|1350210_1351050_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	41.5	9.6e-55
>prophage 96
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1362662	1364036	2853973		Megavirus(100.0%)	1	NA	NA
WP_000952041.1|1362662_1364036_-	deoxyribodipyrimidine photo-lyase	NA	K7Y8W8	Megavirus	31.6	2.8e-43
>prophage 97
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1369013	1375293	2853973		Bacillus_phage(33.33%)	6	NA	NA
WP_000857598.1|1369013_1370687_-	amino acid ABC transporter ATP-binding/permease protein	NA	W8CYL7	Bacillus_phage	23.2	3.4e-11
WP_000737160.1|1370683_1372315_-	ABC transporter ATP-binding protein/permease	NA	W5SAS9	Pithovirus	27.8	6.7e-12
WP_000469894.1|1372533_1373409_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_000358498.1|1373580_1374264_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000148826.1|1374266_1374725_+	YaiI/YqxD family protein	NA	NA	NA	NA	NA
WP_000820897.1|1374726_1375293_+	TIGR00730 family Rossman fold protein	NA	A0A1G5S9X4	Enterococcus_phage	36.9	4.7e-21
>prophage 98
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1382083	1382557	2853973		Pandoravirus(100.0%)	1	NA	NA
WP_000833486.1|1382083_1382557_-	cupin	NA	A0A291AU44	Pandoravirus	39.4	1.6e-14
>prophage 99
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1387819	1388617	2853973		Bacillus_phage(100.0%)	1	NA	NA
WP_000731644.1|1387819_1388617_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A223LD43	Bacillus_phage	30.2	1.2e-06
>prophage 100
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1393448	1394210	2853973		Planktothrix_phage(100.0%)	1	NA	NA
WP_000985996.1|1393448_1394210_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.8	7.2e-33
>prophage 101
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1398584	1399628	2853973		Acanthamoeba_polyphaga_mimivirus(100.0%)	1	NA	NA
WP_001030772.1|1398584_1399628_-	alpha/beta hydrolase	NA	A0A0G2YDK2	Acanthamoeba_polyphaga_mimivirus	26.6	2.0e-17
>prophage 102
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1406151	1406949	2853973		Planktothrix_phage(100.0%)	1	NA	NA
WP_001080809.1|1406151_1406949_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.7	1.1e-18
>prophage 103
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1410174	1414133	2853973		Bacillus_phage(33.33%)	3	NA	NA
WP_000817954.1|1410174_1411902_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	43.3	9.7e-110
WP_000793067.1|1412322_1413618_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	26.9	2.0e-14
WP_000832260.1|1413734_1414133_-	glycerol-3-phosphate cytidylyltransferase	NA	A0A222YWT0	Streptomyces_phage	39.9	3.2e-16
>prophage 104
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1421067	1421811	2853973		Indivirus(100.0%)	1	NA	NA
WP_000894464.1|1421067_1421811_+	metal ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	29.7	1.2e-11
>prophage 105
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1434349	1434910	2853973	integrase	Streptococcus_phage(100.0%)	1	1428503:1428517	1438500:1438514
1428503:1428517	attL	TTTTGATACCATTTC	NA	NA	NA	NA
WP_001044915.1|1434349_1434910_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A141E172	Streptococcus_phage	35.1	5.7e-19
WP_001044915.1|1434349_1434910_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A141E172	Streptococcus_phage	35.1	5.7e-19
1438500:1438514	attR	TTTTGATACCATTTC	NA	NA	NA	NA
>prophage 106
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1447738	1451092	2853973		Tupanvirus(50.0%)	3	NA	NA
WP_001200748.1|1447738_1448749_-	alcohol dehydrogenase AdhP	NA	A0A2K9L339	Tupanvirus	27.3	5.6e-33
WP_001792725.1|1449247_1449769_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000180234.1|1449796_1451092_-	HD domain-containing protein	NA	E3T4P8	Cafeteria_roenbergensis_virus	27.9	1.2e-24
>prophage 107
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1458664	1459987	2853973		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_000860592.1|1458664_1459987_+	FAD-containing oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	46.8	2.6e-107
>prophage 108
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1471291	1471948	2853973		Elephant_endotheliotropic_herpesvirus(100.0%)	1	NA	NA
WP_000455256.1|1471291_1471948_-	uracil-DNA glycosylase	NA	U5U4C1	Elephant_endotheliotropic_herpesvirus	46.4	1.1e-45
>prophage 109
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1475589	1478910	2853973		Staphylococcus_phage(50.0%)	2	NA	NA
WP_001100835.1|1475589_1476966_-	long-chain fatty acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	24.5	3.9e-21
WP_000347061.1|1477509_1478910_-	MFS transporter	NA	Q6JIH2	Burkholderia_virus	32.8	9.4e-55
>prophage 110
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1502198	1502861	2853973		Enterococcus_phage(100.0%)	1	NA	NA
WP_001067261.1|1502198_1502861_+	deoxynucleoside kinase	NA	A0A0M3UL55	Enterococcus_phage	37.4	1.4e-24
>prophage 111
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1509444	1510632	2853973		Emiliania_huxleyi_virus(100.0%)	1	NA	NA
WP_000250823.1|1509444_1510632_-	glycine C-acetyltransferase	NA	V5LQ39	Emiliania_huxleyi_virus	30.6	4.4e-45
>prophage 112
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1513660	1524614	2853973		Streptococcus_phage(33.33%)	6	NA	NA
WP_000090315.1|1513660_1515742_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	28.3	2.7e-66
WP_001137495.1|1515864_1516335_-	30S ribosomal protein S7	NA	NA	NA	NA	NA
WP_001142337.1|1516400_1516814_-	30S ribosomal protein S12	NA	NA	NA	NA	NA
WP_000031892.1|1516911_1517166_-	50S ribosomal protein L7ae-like protein	NA	NA	NA	NA	NA
WP_001788197.1|1517302_1520899_-	DNA-directed RNA polymerase subunit beta'	NA	R4TQM7	Phaeocystis_globosa_virus	24.6	3.3e-67
WP_000918667.1|1521062_1524614_-	DNA-directed RNA polymerase subunit beta	NA	A0A1B1ISA9	uncultured_Mediterranean_phage	24.3	2.1e-50
>prophage 113
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1528297	1533080	2853973	tRNA	Bacillus_virus(50.0%)	8	NA	NA
WP_001288302.1|1528297_1528846_-	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	33.5	8.6e-12
WP_001074473.1|1528858_1529041_-	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_001788193.1|1529096_1529240_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_000872882.1|1529354_1529924_-	RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_000664737.1|1530004_1530529_-	NYN domain-containing protein	NA	NA	NA	NA	NA
WP_000390332.1|1530528_1531275_-	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
WP_000370182.1|1531282_1531687_-	Mini-ribonuclease 3	NA	NA	NA	NA	NA
WP_000631969.1|1531679_1533080_-|tRNA	cysteine--tRNA ligase	tRNA	A0A1V0SAQ2	Catovirus	31.8	1.2e-54
>prophage 114
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1539091	1541548	2853973	protease	Escherichia_phage(100.0%)	1	NA	NA
WP_160199667.1|1539091_1541548_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A1C3S747	Escherichia_phage	41.2	2.3e-133
>prophage 115
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1560353	1570624	2853973	tRNA	Catovirus(16.67%)	10	NA	NA
WP_001288202.1|1560353_1561841_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	41.1	2.1e-92
WP_001790128.1|1561893_1561986_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000613722.1|1562379_1562856_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_001154302.1|1562852_1563218_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_000167944.1|1563195_1563999_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	29.0	3.0e-21
WP_000057594.1|1564214_1565147_-	cysteine synthase A	NA	A0A1X9I5K7	Streptococcus_phage	65.7	3.7e-108
WP_000148598.1|1565325_1566207_-	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA	NA
WP_001167888.1|1566434_1568528_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	E5EQ50	Micromonas_sp._RCC1109_virus	42.7	4.0e-110
WP_000551283.1|1568784_1569324_-	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	29.8	6.5e-12
WP_001176709.1|1569328_1570624_-|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	A0A1V0SI91	Klosneuvirus	24.5	4.8e-13
>prophage 116
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1579880	1582345	2853973		Hokovirus(50.0%)	2	NA	NA
WP_000933774.1|1579880_1580846_-	ribose-phosphate diphosphokinase	NA	A0A1V0SHF7	Hokovirus	35.4	6.1e-45
WP_001252543.1|1580992_1582345_-	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A2K9L821	Tupanvirus	30.4	8.3e-24
>prophage 117
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1588250	1591348	2853973	tRNA	Klosneuvirus(50.0%)	2	NA	NA
WP_001051136.1|1588250_1590224_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	36.0	3.2e-93
WP_000279926.1|1590508_1591348_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	45.8	2.7e-57
>prophage 118
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1595254	1595872	2853973		Streptococcus_phage(100.0%)	1	NA	NA
WP_001272126.1|1595254_1595872_-	dTMP kinase	NA	M1PSC7	Streptococcus_phage	48.3	9.2e-47
>prophage 119
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1605011	1606709	2853973		Streptococcus_virus(100.0%)	1	NA	NA
WP_001109040.1|1605011_1606709_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	42.3	1.9e-54
>prophage 120
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1623357	1629596	2853973		Lactobacillus_phage(33.33%)	6	NA	NA
WP_001170264.1|1623357_1624362_-	autolysin/adhesin Aaa	NA	A0A0A7NU10	Lactobacillus_phage	41.2	1.6e-24
WP_000825530.1|1624693_1625536_-	dipeptide ABC transporter glycylmethionine-binding lipoprotein	NA	NA	NA	NA	NA
WP_000467994.1|1625572_1626232_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000569281.1|1626235_1627261_-	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.3	3.7e-32
WP_001036648.1|1627555_1628698_-	bifunctional cystathionine gamma-lyase/homocysteine desulfhydrase	NA	NA	NA	NA	NA
WP_000634098.1|1628690_1629596_-	cysteine synthase family protein	NA	A0A1W6JIM2	Lactococcus_phage	39.7	3.8e-49
>prophage 121
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1655542	1658302	2853973		Staphylococcus_phage(100.0%)	2	NA	NA
WP_000072584.1|1655542_1656754_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	35.2	2.2e-44
WP_031770049.1|1656757_1658302_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	97.9	1.8e-285
>prophage 122
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1670839	1676288	2853973	transposase	Paenibacillus_phage(25.0%)	5	NA	NA
WP_000159787.1|1670839_1671112_+|transposase	transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	50.6	1.3e-13
WP_000041880.1|1671510_1672215_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	U5U4R0	Staphylococcus_phage	37.1	5.8e-29
WP_000551643.1|1672606_1673143_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000424963.1|1673255_1674797_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	32.6	1.2e-23
WP_160199668.1|1674821_1676288_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.3	2.0e-95
>prophage 123
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1685248	1686772	2853973		Enterococcus_phage(100.0%)	1	NA	NA
WP_000930514.1|1685248_1686772_+	alkyl hydroperoxide reductase subunit F	NA	A0A249XZT7	Enterococcus_phage	33.6	1.4e-40
>prophage 124
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1695086	1701415	2853973		Staphylococcus_phage(50.0%)	8	NA	NA
WP_000934799.1|1695086_1695590_-	single-stranded DNA-binding protein	NA	A0A1W6JPL9	Staphylococcus_phage	74.7	1.2e-60
WP_001261460.1|1695610_1695907_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_001052484.1|1696150_1696342_+	hypothetical protein	NA	U3PCX8	Staphylococcus_phage	80.0	1.1e-22
WP_001218732.1|1696427_1697525_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_000157348.1|1697536_1697740_-	DUF951 domain-containing protein	NA	NA	NA	NA	NA
WP_000373073.1|1697769_1698651_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_001557587.1|1698804_1699650_-	ParB/RepB/Spo0J family partition protein	NA	A0A1C9EHW0	Gordonia_phage	34.4	1.6e-12
WP_000655692.1|1700311_1701415_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	A0A0B5JD48	Pandoravirus	28.0	3.9e-11
>prophage 125
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1711353	1712196	2853973		Anomala_cuprea_entomopoxvirus(100.0%)	1	NA	NA
WP_000209551.1|1711353_1712196_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	27.2	3.8e-11
>prophage 126
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1733505	1736240	2853973		Bodo_saltans_virus(50.0%)	3	NA	NA
WP_000280799.1|1733505_1734528_-	lipoate--protein ligase	NA	A0A2H4UVX5	Bodo_saltans_virus	30.4	6.7e-10
WP_001191954.1|1734505_1735450_-	NAD-dependent deacetylase	NA	NA	NA	NA	NA
WP_000449069.1|1735439_1736240_-	protein-ADP-ribose hydrolase	NA	A0A2K9L8X2	Tupanvirus	43.4	5.8e-41
>prophage 127
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1754479	1755157	2853973		Planktothrix_phage(100.0%)	1	NA	NA
WP_000911017.1|1754479_1755157_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.9	1.6e-31
>prophage 128
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1770827	1775267	2853973		Mycobacterium_phage(100.0%)	1	NA	NA
WP_000549287.1|1770827_1775267_-	type VII secretion protein EssC	NA	V5UPA0	Mycobacterium_phage	25.6	6.3e-28
>prophage 129
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1785872	1787534	2853973		Amsacta_moorei_entomopoxvirus(50.0%)	2	NA	NA
WP_000570070.1|1785872_1786532_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	37.2	7.6e-23
WP_000736784.1|1786583_1787534_-	glycine-glycine endopeptidase LytM	NA	V5R8R0	Arthrobacter_phage	42.7	1.5e-16
>prophage 130
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1796332	1797769	2853973		Pandoravirus(100.0%)	1	NA	NA
WP_000164003.1|1796332_1797769_-	6-phospho-beta-glucosidase	NA	A0A0B5JD41	Pandoravirus	25.7	1.1e-29
>prophage 131
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1801529	1806068	2853973		Enterobacteria_phage(50.0%)	3	NA	NA
WP_000925394.1|1801529_1803269_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	31.5	1.5e-62
WP_000608818.1|1803528_1804203_-	iron-sulfur cluster repair di-iron protein ScdA	NA	NA	NA	NA	NA
WP_000975351.1|1804346_1806068_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	37.4	2.1e-11
>prophage 132
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1815395	1816439	2853973		Synechococcus_phage(100.0%)	1	NA	NA
WP_000645608.1|1815395_1816439_-	galactitol-1-phosphate 5-dehydrogenase	NA	E3SJ82	Synechococcus_phage	24.9	3.5e-14
>prophage 133
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1823653	1825183	2853973		Vibrio_phage(100.0%)	1	NA	NA
WP_000838205.1|1823653_1825183_+	PTS transporter subunit EIIC	NA	A0A2I7SAJ6	Vibrio_phage	50.7	4.5e-10
>prophage 134
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1834058	1835564	2853973		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001008400.1|1834058_1835564_+	acyl--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	25.9	6.0e-39
>prophage 135
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1846671	1852030	2853973		Tetraselmis_virus(50.0%)	3	NA	NA
WP_000894660.1|1846671_1848921_-	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	45.1	1.7e-186
WP_000837116.1|1849508_1850477_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_000127990.1|1850473_1852030_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	27.2	5.8e-13
>prophage 136
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1862240	1864300	2853973		Planktothrix_phage(50.0%)	2	NA	NA
WP_000818915.1|1862240_1863338_-	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	35.6	1.4e-24
WP_000166920.1|1863721_1864300_-	M23 family metallopeptidase	NA	A0A2K9VGT1	Pontimonas_phage	39.1	9.7e-14
>prophage 137
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1872849	1876037	2853973		Planktothrix_phage(33.33%)	3	NA	NA
WP_000067352.1|1872849_1874442_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	4.1e-22
WP_000794565.1|1874951_1875149_-	helix-turn-helix transcriptional regulator	NA	A0A1V0E021	Clostridioides_phage	43.3	2.1e-05
WP_000960712.1|1875314_1876037_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	34.8	4.1e-22
>prophage 138
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1879908	1880589	2853973		Planktothrix_phage(100.0%)	1	NA	NA
WP_000571407.1|1879908_1880589_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.0	2.9e-33
>prophage 139
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1897394	1898579	2853973		Klosneuvirus(100.0%)	1	NA	NA
WP_001084442.1|1897394_1898579_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	2.0e-34
>prophage 140
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1903415	1913699	2853973		Tupanvirus(50.0%)	3	NA	NA
WP_000605281.1|1903415_1910591_-	non-ribosomal peptide synthetase	NA	A0A2K9KZV5	Tupanvirus	29.7	4.5e-68
WP_000826861.1|1911037_1912288_-	MFS transporter	NA	NA	NA	NA	NA
WP_000706135.1|1912673_1913699_-	NAD-dependent formate dehydrogenase	NA	A0A1V0SBV6	Catovirus	33.5	8.5e-29
>prophage 141
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1917234	1920464	2853973		Bacillus_virus(50.0%)	4	NA	NA
WP_000590855.1|1917234_1917975_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.1	2.5e-38
WP_000171919.1|1918316_1918829_-	DUF4242 domain-containing protein	NA	NA	NA	NA	NA
WP_000356963.1|1919007_1919211_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001013485.1|1919504_1920464_-	cation transporter	NA	A0A1V0SED0	Indivirus	34.2	1.2e-11
>prophage 142
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1923805	1926290	2853973		Catovirus(50.0%)	2	NA	NA
WP_000723436.1|1923805_1924951_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	25.9	4.6e-23
WP_000779504.1|1925027_1926290_-	nucleotide sugar dehydrogenase	NA	A0A127AXI2	Bacillus_phage	25.5	4.3e-22
>prophage 143
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1933125	1939690	2853973		Catovirus(50.0%)	6	NA	NA
WP_000413171.1|1933125_1934250_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SJE0	Klosneuvirus	59.6	6.7e-128
WP_001028283.1|1934253_1935363_-	capsular polysaccharide biosynthesis protein CapF	NA	NA	NA	NA	NA
WP_000459062.1|1935375_1936404_-	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	35.3	1.1e-41
WP_000940790.1|1936393_1938217_-	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	29.1	5.2e-29
WP_000565304.1|1938236_1939001_-	tyrosine-protein phosphatase	NA	NA	NA	NA	NA
WP_000037332.1|1939003_1939690_-	tyrosine-protein kinase	NA	A0A1X9I5D6	Streptococcus_phage	36.1	3.7e-28
>prophage 144
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1943710	1944886	2853973		Clostridium_phage(100.0%)	1	NA	NA
WP_000469833.1|1943710_1944886_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0A7RTT7	Clostridium_phage	27.6	2.0e-29
>prophage 145
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1950325	1951099	2853973		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000078092.1|1950325_1951099_+	phosphonate ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.1	3.8e-13
>prophage 146
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1959130	1959730	2853973		Bacillus_thuringiensis_phage(100.0%)	1	NA	NA
WP_000874681.1|1959130_1959730_-	Superoxide dismutase [Mn/Fe] 2	NA	Q56AR7	Bacillus_thuringiensis_phage	50.2	7.6e-54
>prophage 147
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1964667	1969764	2853973		Catovirus(50.0%)	6	NA	NA
WP_001793242.1|1964667_1965648_-	NAD-dependent epimerase/dehydratase family protein	NA	A0A1V0SAI6	Catovirus	37.0	1.0e-47
WP_001789407.1|1965717_1965840_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000183771.1|1965983_1966760_-	(S)-acetoin forming diacetyl reductase	NA	NA	NA	NA	NA
WP_000414629.1|1966971_1967598_-	MFS transporter	NA	NA	NA	NA	NA
WP_001015549.1|1967793_1968558_-	bifunctional transcriptional regulator/O-phospho-L-serine synthase SbnI	NA	NA	NA	NA	NA
WP_001223713.1|1968561_1969764_-	staphyloferrin B biosynthesis decarboxylase SbnH	NA	A0A2K9L4I2	Tupanvirus	21.1	3.9e-09
>prophage 148
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	1978030	1982240	2853973		Lactococcus_phage(50.0%)	4	NA	NA
WP_000570808.1|1978030_1979011_-	2,3-diaminopropionate biosynthesis protein SbnA	NA	A0A1W6JHY1	Lactococcus_phage	35.6	2.1e-40
WP_001045111.1|1979241_1980234_+	staphyloferrin B ABC transporter substrate-binding protein SirA	NA	NA	NA	NA	NA
WP_000924990.1|1980249_1981245_+	staphyloferrin B ABC transporter permease subunit SirB	NA	NA	NA	NA	NA
WP_000136633.1|1981241_1982240_+	staphyloferrin B ABC transporter permease subunit SirC	NA	A0A2H4IY97	uncultured_Caudovirales_phage	27.8	5.2e-15
>prophage 149
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2015323	2016388	2853973		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000816133.1|2015323_2016388_-	persulfide response sulfurtransferase CstA	NA	A0A2H4PQR9	Staphylococcus_phage	41.8	7.7e-09
>prophage 150
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2027076	2033730	2853973		Streptococcus_phage(50.0%)	4	NA	NA
WP_000852430.1|2027076_2029098_-	K(+)-transporting ATPase subunit B	NA	E4ZFI9	Streptococcus_phage	29.0	6.6e-41
WP_000029431.1|2029116_2030793_-	potassium-transporting ATPase subunit A	NA	NA	NA	NA	NA
WP_000631574.1|2030813_2030894_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_000446429.1|2031060_2033730_+	sensor histidine kinase KdpD	NA	A0A2K9L0Z8	Tupanvirus	21.5	6.0e-10
>prophage 151
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2041512	2044512	2853973		Bacillus_phage(100.0%)	2	NA	NA
WP_000815646.1|2041512_2042862_+	recombinase family protein	NA	Q9T200	Bacillus_phage	25.1	1.4e-18
WP_001186602.1|2042883_2044512_+	recombinase family protein	NA	A0A0S2SXR4	Bacillus_phage	31.4	2.4e-46
>prophage 152
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2057744	2058419	2853973	transposase	Staphylococcus_phage(100.0%)	1	NA	NA
WP_001106057.1|2057744_2058419_+|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.1	2.6e-127
>prophage 153
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2062802	2063765	2853973	transposase	Streptococcus_phage(50.0%)	2	NA	NA
WP_001817892.1|2062802_2063000_+	protein rep	NA	A0A286QS97	Streptococcus_phage	62.0	1.2e-08
WP_001106057.1|2063090_2063765_+|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.1	2.6e-127
>prophage 154
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2069420	2079430	2853973		Bacillus_phage(40.0%)	7	NA	NA
WP_000088649.1|2069420_2070221_-	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	35.9	1.0e-37
WP_001104165.1|2070609_2071398_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001060140.1|2071398_2072733_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000871607.1|2072725_2074552_-	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	31.3	1.6e-30
WP_000101976.1|2074564_2075266_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.2	3.5e-42
WP_000095328.1|2076468_2077752_-	adenylosuccinate synthase	NA	L7Y4J5	Megavirus	34.6	1.8e-68
WP_000375647.1|2078029_2079430_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	48.1	5.4e-111
>prophage 155
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2086120	2095166	2853973	tRNA	Bacillus_virus(50.0%)	5	NA	NA
WP_000884332.1|2086120_2087407_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	50.9	4.5e-88
WP_000177465.1|2087785_2089300_-	histidine ammonia-lyase	NA	A0A1V0S940	Catovirus	38.4	1.2e-90
WP_000449218.1|2089625_2090438_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_000819067.1|2090525_2093195_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	35.9	4.6e-119
WP_000255578.1|2093231_2095166_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	44.9	5.7e-143
>prophage 156
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2105266	2111823	2853973		Faecalibacterium_phage(25.0%)	8	NA	NA
WP_000742837.1|2105266_2106106_+	nucleoid occlusion protein	NA	A0A2K9V477	Faecalibacterium_phage	23.8	2.2e-06
WP_000491382.1|2106556_2106910_+	DUF3147 family protein	NA	NA	NA	NA	NA
WP_000779134.1|2106977_2107373_+	DUF3147 family protein	NA	NA	NA	NA	NA
WP_001054128.1|2107632_2108202_+	helix-turn-helix transcriptional regulator	NA	D2XQ11	Bacillus_virus	33.3	6.2e-05
WP_001059079.1|2108319_2108520_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	69.8	3.4e-19
WP_000672033.1|2108911_2109103_-	peptide resistance ABC transporter activity modulator VraH	NA	NA	NA	NA	NA
WP_000143647.1|2109194_2111075_-	peptide resistance ABC transporter permease subunit VraE	NA	NA	NA	NA	NA
WP_000154162.1|2111064_2111823_-	peptide resistance ABC transporter ATP-binding subunit VraD	NA	G9BWD6	Planktothrix_phage	39.5	9.0e-36
>prophage 157
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2126076	2127789	2853973		Planktothrix_phage(100.0%)	1	NA	NA
WP_000138654.1|2126076_2127789_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.3	1.4e-20
>prophage 158
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2133417	2134431	2853973		Faustovirus(100.0%)	1	NA	NA
WP_000639184.1|2133417_2134431_+	histidinol-phosphate aminotransferase family protein	NA	A0A1X7QHI1	Faustovirus	25.9	9.6e-09
>prophage 159
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2146770	2147463	2853973		Streptococcus_phage(100.0%)	1	NA	NA
WP_000185863.1|2146770_2147463_+	polysaccharide biosynthesis tyrosine autokinase	NA	A0A1X9I5D6	Streptococcus_phage	38.0	2.2e-28
>prophage 160
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2173561	2175421	2853973		Enterococcus_phage(100.0%)	1	NA	NA
WP_001125628.1|2173561_2175421_-	amidase domain-containing protein	NA	A0A249Y0X5	Enterococcus_phage	37.3	9.7e-15
>prophage 161
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2201104	2202855	2853973		Ectocarpus_siliculosus_virus(50.0%)	2	NA	NA
WP_000143425.1|2201104_2201992_+	sensor histidine kinase	NA	Q8QNA2	Ectocarpus_siliculosus_virus	22.5	2.5e-05
WP_000923760.1|2202099_2202855_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	3.0e-31
>prophage 162
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2206275	2206773	2853973		Canarypox_virus(100.0%)	1	NA	NA
WP_001065268.1|2206275_2206773_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	33.1	1.8e-21
>prophage 163
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2211767	2214151	2853973		Enterococcus_phage(100.0%)	2	NA	NA
WP_001071729.1|2211767_2213618_+	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	64.3	9.3e-236
WP_000173331.1|2213614_2214151_+	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A288TZV3	Enterococcus_phage	48.0	3.9e-41
>prophage 164
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2219029	2229143	2853973	holin	Klosneuvirus(50.0%)	9	NA	NA
WP_000066521.1|2219029_2220739_+|holin	choline dehydrogenase	holin	A0A1V0SI18	Klosneuvirus	32.3	3.8e-58
WP_000011688.1|2221016_2221229_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001028775.1|2221508_2221952_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_001172341.1|2222145_2223744_+	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	36.8	5.3e-78
WP_001791980.1|2223803_2224133_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001130051.1|2224428_2225925_+	malate dehydrogenase (quinone)	NA	NA	NA	NA	NA
WP_001031409.1|2226118_2227009_-	fructose bisphosphate aldolase	NA	A0A0K0KVJ8	Prochlorococcus_phage	29.2	1.2e-07
WP_001237629.1|2227131_2227548_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000030072.1|2227805_2229143_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	26.7	1.0e-18
>prophage 165
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2259476	2263265	2853973		Staphylococcus_phage(50.0%)	2	NA	NA
WP_000751263.1|2259476_2260178_+	lytic transglycosylase IsaA	NA	Q4Z8Z7	Staphylococcus_phage	46.4	5.2e-38
WP_000379821.1|2261453_2263265_+	O-acetyltransferase OatA	NA	A0A1R3Y5Q6	Salmonella_virus	31.5	1.3e-35
>prophage 166
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2271699	2275814	2853973		Acanthocystis_turfacea_Chlorella_virus(50.0%)	3	NA	NA
WP_000161369.1|2271699_2272698_+	D-lactate dehydrogenase	NA	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	30.2	1.0e-34
WP_000076661.1|2272788_2272995_-	copper chaperone CopZ	NA	NA	NA	NA	NA
WP_000024139.1|2273405_2275814_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	40.8	3.2e-127
>prophage 167
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2285055	2288091	2853973	protease	Enterobacteria_phage(50.0%)	2	NA	NA
WP_001058993.1|2285055_2287161_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	38.5	3.1e-118
WP_000455988.1|2287569_2288091_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	41.1	2.0e-26
>prophage 168
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2294517	2300901	2853973		Yellowstone_lake_phycodnavirus(33.33%)	5	NA	NA
WP_001062663.1|2294517_2296257_+	pyruvate oxidase	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	24.1	6.0e-35
WP_000473679.1|2296557_2298624_+	PTS glucoside EIICBA component	NA	A0A2I7SAJ6	Vibrio_phage	43.3	8.3e-07
WP_000206031.1|2299003_2299414_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_000240663.1|2299455_2299812_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001228167.1|2299932_2300901_+	alpha/beta hydrolase	NA	A0A167RJ59	Powai_lake_megavirus	26.5	4.0e-12
>prophage 169
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2310190	2311183	2853973		Acanthocystis_turfacea_Chlorella_virus(100.0%)	1	NA	NA
WP_000161545.1|2310190_2311183_-	D-lactate dehydrogenase	NA	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	32.7	3.7e-37
>prophage 170
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2320461	2321157	2853973		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000538625.1|2320461_2321157_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	37.6	3.0e-38
>prophage 171
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2339907	2340774	2853973		Bacillus_phage(100.0%)	1	NA	NA
WP_000721336.1|2339907_2340774_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	52.6	1.3e-78
>prophage 172
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2348959	2354155	2853973		Streptococcus_phage(50.0%)	3	NA	NA
WP_075339662.1|2348959_2350768_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	37.3	6.6e-93
WP_000755946.1|2350899_2351292_+	(deoxy)nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_000088733.1|2351293_2354155_+	DUF3427 domain-containing protein	NA	Q5YA94	Bacillus_phage	27.9	3.1e-28
>prophage 173
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2361997	2362693	2853973		Bacillus_phage(100.0%)	1	NA	NA
WP_000217456.1|2361997_2362693_+	oxidoreductase	NA	W8CYX9	Bacillus_phage	35.6	4.3e-08
>prophage 174
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2367247	2368066	2853973		Acanthamoeba_polyphaga_moumouvirus(100.0%)	1	NA	NA
WP_000824948.1|2367247_2368066_+	SDR family oxidoreductase	NA	L7RG25	Acanthamoeba_polyphaga_moumouvirus	27.2	1.3e-08
>prophage 175
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2376118	2377676	2853973		Planktothrix_phage(50.0%)	2	NA	NA
WP_000173871.1|2376118_2376934_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.8	8.8e-13
WP_000598772.1|2376926_2377676_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.7	9.0e-20
>prophage 176
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2384947	2389376	2853973		Organic_Lake_phycodnavirus(50.0%)	4	NA	NA
WP_000923526.1|2384947_2385610_+	ATP-binding cassette domain-containing protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	30.8	5.5e-21
WP_000072149.1|2385602_2386379_+	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA	NA
WP_000026189.1|2386774_2387962_+	DHA family class C beta-lactamase	NA	NA	NA	NA	NA
WP_000700925.1|2388023_2389376_-	carboxylesterase/lipase family protein	NA	A0A0B5J865	Pandoravirus	34.2	2.5e-12
>prophage 177
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2392770	2394629	2853973		Mycoplasma_phage(50.0%)	2	NA	NA
WP_000948974.1|2392770_2393997_+	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	50.5	6.6e-20
WP_000569120.1|2393993_2394629_+	ABC transporter permease	NA	G3M9Y4	Bacillus_virus	26.2	9.0e-05
>prophage 178
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2412356	2418618	2853973		Bacillus_phage(66.67%)	5	NA	NA
WP_001176863.1|2412356_2413499_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	44.3	5.3e-56
WP_000779360.1|2413766_2414153_+	GtrA family protein	NA	NA	NA	NA	NA
WP_000482652.1|2414286_2414394_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_001064825.1|2415096_2416860_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	24.7	2.5e-36
WP_000486487.1|2416884_2418618_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.7	9.0e-31
>prophage 179
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2422079	2427850	2853973		Staphylococcus_phage(75.0%)	6	NA	NA
WP_000971550.1|2422079_2423195_+	pyridoxal phosphate-dependent aminotransferase family protein	NA	V5LQ39	Emiliania_huxleyi_virus	24.7	1.6e-20
WP_000286875.1|2423205_2423898_+	6-carboxyhexanoate--CoA ligase	NA	NA	NA	NA	NA
WP_000200956.1|2423908_2424376_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000783428.1|2424427_2425405_-	bi-component gamma-hemolysin HlgAB/HlgCB subunit B	NA	A0A2H4PQH7	Staphylococcus_phage	76.2	7.1e-142
WP_000916704.1|2425406_2426354_-	bi-component gamma-hemolysin HlgCB subunit C	NA	A0A2I6PER8	Staphylococcus_phage	77.5	3.2e-139
WP_000594519.1|2426920_2427850_-	bi-component gamma-hemolysin HlgAB subunit A	NA	A0A2H4PQI5	Staphylococcus_phage	71.1	3.2e-120
>prophage 180
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2435907	2436639	2853973		Bacillus_virus(100.0%)	1	NA	NA
WP_000615461.1|2435907_2436639_+	amino acid ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.7	4.1e-25
>prophage 181
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2453288	2454848	2853973		Escherichia_phage(100.0%)	1	NA	NA
WP_000692648.1|2453288_2454848_+	nitrate reductase subunit beta	NA	A0A077SL61	Escherichia_phage	46.8	4.4e-21
>prophage 182
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2476176	2477211	2853973		Bacillus_virus(100.0%)	1	NA	NA
WP_000655971.1|2476176_2477211_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	26.6	5.8e-17
>prophage 183
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2487056	2490953	2853973		Hokovirus(33.33%)	4	NA	NA
WP_000477338.1|2487056_2488430_-	heme sensor histidine kinase HssS	NA	A0A1V0SGX0	Hokovirus	29.8	2.3e-13
WP_000249497.1|2488422_2489097_-	DNA-binding heme response regulator HssR	NA	W8CYM9	Bacillus_phage	45.2	3.6e-52
WP_000761395.1|2489232_2490288_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001229920.1|2490287_2490953_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.8	1.6e-36
>prophage 184
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2494689	2495898	2853973		Salmonella_phage(100.0%)	1	NA	NA
WP_000999131.1|2494689_2495898_+	multidrug effflux MFS transporter	NA	S4TR35	Salmonella_phage	26.3	3.9e-33
>prophage 185
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2507988	2508888	2853973		Brazilian_cedratvirus(100.0%)	1	NA	NA
WP_000524830.1|2507988_2508888_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	28.7	1.2e-15
>prophage 186
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2516260	2516680	2853973		Bacillus_phage(100.0%)	1	NA	NA
WP_000920239.1|2516260_2516680_-	FosB1/FosB3 family fosfomycin resistance bacillithiol transferase	NA	Q2LI91	Bacillus_phage	61.9	2.6e-37
>prophage 187
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2522372	2523254	2853973		Diadromus_pulchellus_ascovirus(100.0%)	1	NA	NA
WP_000235289.1|2522372_2523254_+	SDR family oxidoreductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	46.3	3.8e-62
>prophage 188
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2531132	2531768	2853973		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_000285450.1|2531132_2531768_+	HAD family hydrolase	NA	A7J6N1	Paramecium_bursaria_Chlorella_virus	27.1	1.6e-09
>prophage 189
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2544711	2548691	2853973		Staphylococcus_phage(50.0%)	4	NA	NA
WP_011447058.1|2544711_2545350_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1W6JQU5	Staphylococcus_phage	48.1	2.6e-36
WP_000684147.1|2545660_2546785_+	NAD(P)-binding protein	NA	A0A2K9L3K5	Tupanvirus	22.8	9.3e-13
WP_000417018.1|2546876_2547830_-	2-hydroxyacid dehydrogenase	NA	A0A1V0SBV6	Catovirus	28.9	6.4e-31
WP_000737705.1|2548190_2548691_-	CHAP domain-containing protein	NA	A0A2R3ZXQ4	Staphylococcus_phage	39.3	2.0e-07
>prophage 190
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2552608	2553412	2853973		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000717381.1|2552608_2553412_-	CHAP domain-containing protein	NA	A0A2R3ZXQ4	Staphylococcus_phage	41.3	9.3e-07
>prophage 191
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2572392	2572998	2853973		Pithovirus(100.0%)	1	NA	NA
WP_000913024.1|2572392_2572998_+	ATP-binding cassette domain-containing protein	NA	W5SAS9	Pithovirus	30.1	4.3e-12
>prophage 192
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2584968	2588136	2853973		Leptospira_phage(100.0%)	1	NA	NA
WP_000592307.1|2584968_2588136_+	efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.8	1.1e-61
>prophage 193
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2611819	2613486	2853973		Anomala_cuprea_entomopoxvirus(50.0%)	2	NA	NA
WP_000389658.1|2611819_2612629_+	energy-coupling factor transporter ATPase	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	30.0	1.7e-19
WP_000155387.1|2612625_2613486_+	energy-coupling factor transporter ATPase	NA	A0A2H4PQG7	Staphylococcus_phage	23.9	9.7e-10
>prophage 194
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2622266	2629921	2853973		Enterobacteria_phage(33.33%)	7	NA	NA
WP_000411031.1|2622266_2623283_+	RNA-directed DNA polymerase	NA	Q7M2A9	Enterobacteria_phage	29.7	1.0e-18
WP_000655241.1|2623856_2624039_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000130149.1|2624532_2626197_+	acetolactate synthase AlsS	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	25.9	8.0e-45
WP_000186134.1|2626233_2626938_+	acetolactate decarboxylase	NA	NA	NA	NA	NA
WP_000769705.1|2627321_2627747_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000044362.1|2628040_2628856_+	hydrolase	NA	NA	NA	NA	NA
WP_001044441.1|2629066_2629921_+	M23 family metallopeptidase	NA	E5G070	Clostridium_phage	37.9	4.9e-06
>prophage 195
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2633303	2635613	2853973		Staphylococcus_phage(50.0%)	4	NA	NA
WP_001015500.1|2633303_2634152_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	39.2	2.0e-44
WP_000875476.1|2634384_2634588_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001791678.1|2634674_2634836_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001557494.1|2634872_2635613_-	NAD-dependent protein deacylase	NA	A0A2I2L319	Orpheovirus	29.9	1.5e-14
>prophage 196
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2641933	2643346	2853973		Pandoravirus(100.0%)	1	NA	NA
WP_000169224.1|2641933_2643346_+	6-phospho-beta-galactosidase	NA	A0A0B5JD41	Pandoravirus	28.9	3.0e-48
>prophage 197
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2647309	2648872	2853973		Vibrio_phage(100.0%)	1	NA	NA
WP_000792342.1|2647309_2648872_+	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	24.6	1.2e-18
>prophage 198
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2659074	2660043	2853973		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_000989088.1|2659074_2660043_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4IY97	uncultured_Caudovirales_phage	28.8	1.0e-15
>prophage 199
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2677495	2678404	2853973		Klosneuvirus(100.0%)	1	NA	NA
WP_000167867.1|2677495_2678404_+	arginase	NA	A0A1V0SJM8	Klosneuvirus	32.0	3.2e-27
>prophage 200
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2681995	2689441	2853973		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001048259.1|2681995_2689441_+	DUF1542 domain-containing protein	NA	A0A2H4PQU6	Staphylococcus_phage	31.5	3.9e-22
>prophage 201
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2695697	2698517	2853973		Paramecium_bursaria_Chlorella_virus(50.0%)	2	NA	NA
WP_000334463.1|2695697_2697503_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	M1H1Z3	Paramecium_bursaria_Chlorella_virus	38.8	5.2e-98
WP_000908182.1|2697734_2698517_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.1	3.3e-09
>prophage 202
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2709697	2713528	2853973		Clostridium_phage(50.0%)	4	NA	NA
WP_000070866.1|2709697_2710141_+	DNA starvation/stationary phase protection protein	NA	A0A0A7RTZ1	Clostridium_phage	53.7	5.6e-38
WP_000160304.1|2710261_2710972_-	purine-nucleoside phosphorylase	NA	NA	NA	NA	NA
WP_001083318.1|2711285_2711948_+	deoxyribose-phosphate aldolase	NA	NA	NA	NA	NA
WP_001242311.1|2712226_2713528_+	pyrimidine-nucleoside phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	58.9	3.6e-133
>prophage 203
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2721468	2723079	2853973		Only_Syngen_Nebraska_virus(100.0%)	1	NA	NA
WP_000159960.1|2721468_2723079_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	49.6	2.7e-146
>prophage 204
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2730882	2738632	2853973		Bacillus_virus(25.0%)	9	NA	NA
WP_000273358.1|2730882_2731482_+	thymidine kinase	NA	G3MBK1	Bacillus_virus	42.9	6.2e-32
WP_000460242.1|2731482_2732559_+	peptide chain release factor 1	NA	NA	NA	NA	NA
WP_000248732.1|2732545_2733382_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_015445903.1|2733414_2734512_+	threonylcarbamoyl-AMP synthase	NA	A0A291ATS8	Pandoravirus	35.3	2.3e-40
WP_000697334.1|2734508_2734928_+	low molecular weight protein arginine phosphatase	NA	NA	NA	NA	NA
WP_000654184.1|2735034_2735559_+	TIGR01440 family protein	NA	NA	NA	NA	NA
WP_000120494.1|2735585_2736824_+	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	53.0	8.2e-103
WP_000048712.1|2736851_2737481_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_000723418.1|2737504_2738632_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	29.9	1.0e-27
>prophage 205
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2749036	2749432	2853973		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000932694.1|2749036_2749432_+	single-stranded DNA-binding protein	NA	A0A1J0MFK5	Staphylococcus_phage	38.5	1.3e-14
>prophage 206
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2755703	2756351	2853973		Moumouvirus(100.0%)	1	NA	NA
WP_001187630.1|2755703_2756351_-	HD domain-containing protein	NA	H2ED17	Moumouvirus	27.0	8.0e-09
>prophage 207
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2763551	2765072	2853973		Diachasmimorpha_longicaudata_entomopoxvirus(100.0%)	1	NA	NA
WP_001178942.1|2763551_2765072_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	33.9	2.0e-58
>prophage 208
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2772240	2774268	2853973		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_000546611.1|2772240_2774268_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	23.5	2.3e-25
>prophage 209
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2779417	2782802	2853973		Clostridium_botulinum_C_phage(50.0%)	5	NA	NA
WP_000621175.1|2779417_2779780_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	Q332J9	Clostridium_botulinum_C_phage	32.8	4.2e-07
WP_000390827.1|2780129_2781131_+	PP2C family protein-serine/threonine phosphatase	NA	NA	NA	NA	NA
WP_001052491.1|2781249_2781576_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_001190829.1|2781577_2782057_+	anti-sigma B factor RsbW	NA	NA	NA	NA	NA
WP_001041111.1|2782031_2782802_+	RNA polymerase sigma factor SigB	NA	A0A0A0RNH9	Bacillus_phage	34.9	2.2e-21
>prophage 210
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2796920	2801644	2853973		Micromonas_sp._RCC1109_virus(50.0%)	4	NA	NA
WP_000094583.1|2796920_2798450_-	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	28.1	5.5e-08
WP_072399972.1|2798479_2799499_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_000196911.1|2799620_2799875_-	ACT domain-containing protein	NA	NA	NA	NA	NA
WP_000047811.1|2799874_2801644_-	biosynthetic-type acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	30.6	7.0e-63
>prophage 211
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2805404	2819465	2853973	tRNA	Moraxella_phage(16.67%)	12	NA	NA
WP_000159042.1|2805404_2806430_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	40.6	3.4e-62
WP_160199675.1|2806744_2808355_-	MutS family DNA mismatch repair protein	NA	A0A0N9R0S5	Chrysochromulina_ericina_virus	28.1	1.9e-19
WP_001792272.1|2808443_2808572_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000602057.1|2808716_2810645_-	ABC-F type ribosomal protection protein	NA	A0A2K9L0W2	Tupanvirus	30.2	9.3e-53
WP_001283612.1|2810897_2811533_+	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
WP_072414299.1|2811887_2812916_+	YeeE/YedE family protein	NA	NA	NA	NA	NA
WP_000581076.1|2812975_2813200_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_001052270.1|2813407_2814658_+	ammonium transporter	NA	H8ZJB2	Ostreococcus_tauri_virus	31.2	4.5e-40
WP_000790331.1|2814840_2815791_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_000141432.1|2815939_2817424_+	glycoside hydrolase family 32 protein	NA	S6ATV4	Bacillus_phage	26.5	2.3e-19
WP_001253312.1|2817420_2818380_+	carbohydrate kinase	NA	NA	NA	NA	NA
WP_000688492.1|2818748_2819465_-	response regulator transcription factor	NA	A0A2H4J4Z6	uncultured_Caudovirales_phage	32.6	2.3e-25
>prophage 212
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2826646	2828623	2853973		uncultured_virus(100.0%)	2	NA	NA
WP_000917289.1|2826646_2826931_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000240655.1|2827006_2828623_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	2.6e-157
>prophage 213
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2853973	2832572	2853503	2853973	integrase	Staphylococcus_phage(97.22%)	38	2835415:2835429	2845118:2845132
WP_000791411.1|2832572_2833628_+	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
WP_000595392.1|2833649_2834666_+	bi-component leukocidin LukGH subunit G	NA	A0A1X9IGW5	Staphylococcus_phage	30.2	6.7e-26
2835415:2835429	attL	CTATCATTATCGAAT	NA	NA	NA	NA
WP_000857180.1|2835784_2836822_-|integrase	site-specific integrase	integrase	Q38086	Staphylococcus_phage	98.6	1.4e-175
WP_000427213.1|2836884_2837127_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001558608.1|2837137_2838121_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_000694772.1|2838220_2838403_-	hypothetical protein	NA	A0A2I6PDF8	Staphylococcus_phage	100.0	6.9e-27
WP_000591749.1|2838606_2838948_-	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
WP_000759682.1|2838953_2839886_-	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
WP_001031454.1|2839901_2840615_-	helix-turn-helix transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
WP_000854072.1|2840748_2841012_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	100.0	7.2e-41
WP_001025404.1|2841027_2841243_+	DUF2829 domain-containing protein	NA	A0A0H3U4C7	Staphylococcus_phage	100.0	4.8e-35
WP_000128909.1|2841231_2841561_-	hypothetical protein	NA	M9NS98	Staphylococcus_phage	98.2	5.1e-52
WP_001148605.1|2841611_2842364_+	oxidoreductase	NA	M9NTH5	Staphylococcus_phage	100.0	1.1e-139
WP_001148856.1|2842379_2842577_+	hypothetical protein	NA	O80075	Staphylococcus_phage	100.0	2.5e-30
WP_000762521.1|2842563_2842944_-	DUF2513 domain-containing protein	NA	Q9T1Z5	Staphylococcus_phage	100.0	1.2e-68
WP_001120201.1|2842998_2843322_+	DUF771 domain-containing protein	NA	A0A075LYF5	Staphylococcus_phage	100.0	3.0e-57
WP_000048129.1|2843318_2843480_+	DUF1270 family protein	NA	A0A1P8L6G0	Staphylococcus_phage	100.0	1.9e-20
WP_000165371.1|2843574_2843877_+	DUF2482 family protein	NA	A0A1P8L6F8	Staphylococcus_phage	100.0	7.0e-48
WP_000291510.1|2843881_2844142_+	DUF1108 family protein	NA	A0A1P8L6F5	Staphylococcus_phage	100.0	5.2e-44
WP_001205732.1|2844150_2844414_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000700554.1|2844422_2846366_+	AAA family ATPase	NA	A0A1P8L6F1	Staphylococcus_phage	100.0	0.0e+00
2845118:2845132	attR	ATTCGATAATGATAG	NA	NA	NA	NA
WP_000180600.1|2846367_2847288_+	recombinase RecT	NA	A0A1P8L6F6	Staphylococcus_phage	100.0	5.1e-166
WP_064135358.1|2847368_2847986_+	MBL fold metallo-hydrolase	NA	A0A1P8L6F7	Staphylococcus_phage	100.0	1.2e-86
WP_000934759.1|2847986_2848457_+	single-stranded DNA-binding protein	NA	A0A1P8L6D9	Staphylococcus_phage	100.0	5.7e-81
WP_000148333.1|2848486_2849380_+	DnaD domain-containing protein	NA	A0A1P8L6F0	Staphylococcus_phage	100.0	3.2e-141
WP_000338528.1|2849386_2849605_+	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
WP_000401969.1|2849613_2850018_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A075M042	Staphylococcus_phage	100.0	8.4e-73
WP_000101279.1|2850030_2850402_+	hypothetical protein	NA	A0A2I6PDG3	Staphylococcus_phage	91.1	1.4e-50
WP_000111491.1|2850401_2850659_+	DUF3310 domain-containing protein	NA	A0A1X9H067	Staphylococcus_phage	98.8	6.3e-42
WP_000178987.1|2850655_2850904_+	hypothetical protein	NA	A0A0K1LL46	Staphylococcus_phage	96.3	7.5e-40
WP_001065108.1|2850918_2851164_+	DUF1024 family protein	NA	Q8SDV5	Staphylococcus_phage	95.1	1.7e-36
WP_000185693.1|2851160_2851697_+	hypothetical protein	NA	Q9MBR0	Staphylococcus_prophage	100.0	1.6e-95
WP_001282077.1|2851733_2851979_+	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	98.8	2.5e-35
WP_000195784.1|2851975_2852182_+	DUF1381 domain-containing protein	NA	A0A2I6PEA2	Staphylococcus_phage	94.1	1.1e-17
WP_000595265.1|2852178_2852328_+	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_001557462.1|2852327_2852528_+	DUF1514 domain-containing protein	NA	D2JLD9	Staphylococcus_phage	98.5	5.3e-28
WP_000590122.1|2852555_2852972_+	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000988332.1|2853203_2853503_+	HNH endonuclease	NA	A0A2I6PDH9	Staphylococcus_phage	100.0	3.5e-52
