bac_id	bac_def	spacer_id	hit_contig_id	hit_contig_def	identity	alignment_length	mismatch	gapopen	query_start	query_end	hit_start	hit_end	crispr_array_of_hit_genome	evalue	bitscore	coverage	spacer_sequence	hit_contig_region	hit_contig_sequence	hmm_mismatch
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	1.1|404293|33|NZ_CP047861|CRISPRCasFinder	NZ_CP047861.1	Staphylococcus aureus strain UP_1322 chromosome, complete genome	96.970	33	1	0	1	33	674299	674267	404267-404351|1235857-1235938|1284599-1284677|1680988-1681090|2339166-2339299|2414713-2414791|2579500-2579580|2689052-2689137|2701377-2701458|2830612-2830693	1.09e-08	50.7	1.0	TGGGCCCCAACACAGAGAAATTGGATTCCCAAT	674267-674299	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCA	1
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	1.1|404293|33|NZ_CP047861|CRISPRCasFinder	NZ_CP047861.1	Staphylococcus aureus strain UP_1322 chromosome, complete genome	96.970	33	1	0	1	33	1279087	1279119	404267-404351|1235857-1235938|1284599-1284677|1680988-1681090|2339166-2339299|2414713-2414791|2579500-2579580|2689052-2689137|2701377-2701458|2830612-2830693	1.09e-08	50.7	1.0	TGGGCCCCAACACAGAGAAATTGGATTCCCAAT	1279087-1279119	TGGGCCCCAACACAGAGAAATTGGATTTCCAAT	1
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	2.1|1235881|34|NZ_CP047861|CRISPRCasFinder	NZ_CP047861.1	Staphylococcus aureus strain UP_1322 chromosome, complete genome	97.059	34	1	0	1	34	674300	674267	404267-404351|1235857-1235938|1284599-1284677|1680988-1681090|2339166-2339299|2414713-2414791|2579500-2579580|2689052-2689137|2701377-2701458|2830612-2830693	4.15e-09	52.3	1.0	ATGGGCCCCAACAAAGAGAAATTGGATTCTCAAT	674267-674300	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT	1
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	3.1|1284623|31|NZ_CP047861|CRISPRCasFinder	NZ_CP047861.1	Staphylococcus aureus strain UP_1322 chromosome, complete genome	100.000	31	0	0	1	31	1796162	1796132	404267-404351|1235857-1235938|1284599-1284677|1680988-1681090|2339166-2339299|2414713-2414791|2579500-2579580|2689052-2689137|2701377-2701458|2830612-2830693	7.77e-09	50.7	1.0	GGCAATGCAAGTTGGCGGGGCCCCAACACAG	1796132-1796162	CTGTGTTGGGGCCCCGCCAACTTGCATTGCC	0
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	3.1|1284623|31|NZ_CP047861|CRISPRCasFinder	NZ_CP047861.1	Staphylococcus aureus strain UP_1322 chromosome, complete genome	96.774	31	1	0	1	31	369840	369870	404267-404351|1235857-1235938|1284599-1284677|1680988-1681090|2339166-2339299|2414713-2414791|2579500-2579580|2689052-2689137|2701377-2701458|2830612-2830693	7.00e-08	47.5	1.0	GGCAATGCAAGTTGGCGGGGCCCCAACACAG	369840-369870	GGCAATGGAAGTTGGCGGGGCCCCAACACAG	1
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	3.1|1284623|31|NZ_CP047861|CRISPRCasFinder	NZ_CP047861.1	Staphylococcus aureus strain UP_1322 chromosome, complete genome	96.774	31	1	0	1	31	1796217	1796187	404267-404351|1235857-1235938|1284599-1284677|1680988-1681090|2339166-2339299|2414713-2414791|2579500-2579580|2689052-2689137|2701377-2701458|2830612-2830693	7.00e-08	47.5	1.0	GGCAATGCAAGTTGGCGGGGCCCCAACACAG	1796187-1796217	CTGTGTTGGGGCCCCGCCAACTTGCATTACC	1
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	5.1|2339183|46|NZ_CP047861|PILER-CR	NZ_CP047861.1	Staphylococcus aureus strain UP_1322 chromosome, complete genome	95.652	46	2	0	1	46	2335659	2335704	404267-404351|1235857-1235938|1284599-1284677|1680988-1681090|2339166-2339299|2414713-2414791|2579500-2579580|2689052-2689137|2701377-2701458|2830612-2830693	1.58e-13	68.2	1.0	ACAAAGATAAACCTAATTATCAATTTGGTGGACACAACAGTGTTGA	2335659-2335704	ACAAAGATAAACCTAATTATCAATTCGGTGGACACAATAGTGTTGA	2
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	5.2|2339246|37|NZ_CP047861|PILER-CR	NZ_CP047861.1	Staphylococcus aureus strain UP_1322 chromosome, complete genome	94.595	37	2	0	1	37	2335722	2335758	404267-404351|1235857-1235938|1284599-1284677|1680988-1681090|2339166-2339299|2414713-2414791|2579500-2579580|2689052-2689137|2701377-2701458|2830612-2830693	1.73e-09	53.9	1.0	TTCCAAAAGTAAGTGGTCAAAATGAAGGTCAACAAAC	2335722-2335758	TTCCAAAAGTAAGCGGCCAAAATGAAGGTCAACAAAC	2
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	6.1|2414736|33|NZ_CP047861|CRISPRCasFinder	NZ_CP047861.1	Staphylococcus aureus strain UP_1322 chromosome, complete genome	96.970	33	1	0	1	33	1235568	1235600	404267-404351|1235857-1235938|1284599-1284677|1680988-1681090|2339166-2339299|2414713-2414791|2579500-2579580|2689052-2689137|2701377-2701458|2830612-2830693	1.09e-08	50.7	1.0	CAGTAGCTGGCGGAAAGTCAGCTTACAATAATG	1235568-1235600	CAGAAGCTGGCGGAAAGTCAGCTTACAATAATG	1
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	6.1|2414736|33|NZ_CP047861|CRISPRCasFinder	NZ_CP047861.1	Staphylococcus aureus strain UP_1322 chromosome, complete genome	96.970	33	1	0	1	33	1271789	1271821	404267-404351|1235857-1235938|1284599-1284677|1680988-1681090|2339166-2339299|2414713-2414791|2579500-2579580|2689052-2689137|2701377-2701458|2830612-2830693	1.09e-08	50.7	1.0	CAGTAGCTGGCGGAAAGTCAGCTTACAATAATG	1271789-1271821	CAGAAGCTGGCGGAAAGTCAGCTTACAATAATG	1
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	6.1|2414736|33|NZ_CP047861|CRISPRCasFinder	NZ_CP047861.1	Staphylococcus aureus strain UP_1322 chromosome, complete genome	93.939	33	2	0	1	33	2806626	2806594	404267-404351|1235857-1235938|1284599-1284677|1680988-1681090|2339166-2339299|2414713-2414791|2579500-2579580|2689052-2689137|2701377-2701458|2830612-2830693	9.80e-08	47.5	1.0	CAGTAGCTGGCGGAAAGTCAGCTTACAATAATG	2806594-2806626	CATTATTGTAAGCTGACTTTCCGCCAGCCTCTG	2
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	6.1|2414736|33|NZ_CP047861|CRISPRCasFinder	NZ_CP047861.1	Staphylococcus aureus strain UP_1322 chromosome, complete genome	93.939	33	2	0	1	33	1271844	1271876	404267-404351|1235857-1235938|1284599-1284677|1680988-1681090|2339166-2339299|2414713-2414791|2579500-2579580|2689052-2689137|2701377-2701458|2830612-2830693	9.80e-08	47.5	1.0	CAGTAGCTGGCGGAAAGTCAGCTTACAATAATG	1271844-1271876	CAGAAGCTGACGGAAAGTCAGCTTACAATAATG	2
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	6.1|2414736|33|NZ_CP047861|CRISPRCasFinder	NZ_CP047861.1	Staphylococcus aureus strain UP_1322 chromosome, complete genome	93.939	33	2	0	1	33	1271900	1271932	404267-404351|1235857-1235938|1284599-1284677|1680988-1681090|2339166-2339299|2414713-2414791|2579500-2579580|2689052-2689137|2701377-2701458|2830612-2830693	9.80e-08	47.5	1.0	CAGTAGCTGGCGGAAAGTCAGCTTACAATAATG	1271900-1271932	CAGAAGCTGACGGAAAGTCAGCTTACAATAATG	2
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	7.1|2579525|31|NZ_CP047861|CRISPRCasFinder	NZ_CP047861.1	Staphylococcus aureus strain UP_1322 chromosome, complete genome	96.774	31	1	0	1	31	1271848	1271878	404267-404351|1235857-1235938|1284599-1284677|1680988-1681090|2339166-2339299|2414713-2414791|2579500-2579580|2689052-2689137|2701377-2701458|2830612-2830693	7.00e-08	47.5	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	1271848-1271878	AGCTGACGGAAAGTCAGCTTACAATAATGTG	1
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	7.1|2579525|31|NZ_CP047861|CRISPRCasFinder	NZ_CP047861.1	Staphylococcus aureus strain UP_1322 chromosome, complete genome	96.774	31	1	0	1	31	1271904	1271934	404267-404351|1235857-1235938|1284599-1284677|1680988-1681090|2339166-2339299|2414713-2414791|2579500-2579580|2689052-2689137|2701377-2701458|2830612-2830693	7.00e-08	47.5	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	1271904-1271934	AGCTGACGGAAAGTCAGCTTACAATAATGTG	1
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	7.1|2579525|31|NZ_CP047861|CRISPRCasFinder	NZ_CP047861.1	Staphylococcus aureus strain UP_1322 chromosome, complete genome	93.548	31	2	0	1	31	389687	389657	404267-404351|1235857-1235938|1284599-1284677|1680988-1681090|2339166-2339299|2414713-2414791|2579500-2579580|2689052-2689137|2701377-2701458|2830612-2830693	6.30e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	389657-389687	CACATTATTGTAAGCTGACTTTCCGCCAGCT	2
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	7.1|2579525|31|NZ_CP047861|CRISPRCasFinder	NZ_CP047861.1	Staphylococcus aureus strain UP_1322 chromosome, complete genome	93.548	31	2	0	1	31	674341	674311	404267-404351|1235857-1235938|1284599-1284677|1680988-1681090|2339166-2339299|2414713-2414791|2579500-2579580|2689052-2689137|2701377-2701458|2830612-2830693	6.30e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	674311-674341	CACATTATTGTAAGCTGACTTTTCGTCAGCT	2
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	7.1|2579525|31|NZ_CP047861|CRISPRCasFinder	NZ_CP047861.1	Staphylococcus aureus strain UP_1322 chromosome, complete genome	93.548	31	2	0	1	31	880442	880412	404267-404351|1235857-1235938|1284599-1284677|1680988-1681090|2339166-2339299|2414713-2414791|2579500-2579580|2689052-2689137|2701377-2701458|2830612-2830693	6.30e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	880412-880442	CACATTATTGTAAGCTGACTTTTCGTCAGCT	2
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	7.1|2579525|31|NZ_CP047861|CRISPRCasFinder	NZ_CP047861.1	Staphylococcus aureus strain UP_1322 chromosome, complete genome	93.548	31	2	0	1	31	1452556	1452526	404267-404351|1235857-1235938|1284599-1284677|1680988-1681090|2339166-2339299|2414713-2414791|2579500-2579580|2689052-2689137|2701377-2701458|2830612-2830693	6.30e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	1452526-1452556	CACATTATTGTAAGCTGACTTTTCGTCAGCT	2
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	7.1|2579525|31|NZ_CP047861|CRISPRCasFinder	NZ_CP047861.1	Staphylococcus aureus strain UP_1322 chromosome, complete genome	93.548	31	2	0	1	31	1719827	1719797	404267-404351|1235857-1235938|1284599-1284677|1680988-1681090|2339166-2339299|2414713-2414791|2579500-2579580|2689052-2689137|2701377-2701458|2830612-2830693	6.30e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	1719797-1719827	CACATTATTGTAAGCTGACTTTTCGTCAGCT	2
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	7.1|2579525|31|NZ_CP047861|CRISPRCasFinder	NZ_CP047861.1	Staphylococcus aureus strain UP_1322 chromosome, complete genome	93.548	31	2	0	1	31	80559	80589	404267-404351|1235857-1235938|1284599-1284677|1680988-1681090|2339166-2339299|2414713-2414791|2579500-2579580|2689052-2689137|2701377-2701458|2830612-2830693	6.30e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	80559-80589	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	7.1|2579525|31|NZ_CP047861|CRISPRCasFinder	NZ_CP047861.1	Staphylococcus aureus strain UP_1322 chromosome, complete genome	93.548	31	2	0	1	31	585763	585793	404267-404351|1235857-1235938|1284599-1284677|1680988-1681090|2339166-2339299|2414713-2414791|2579500-2579580|2689052-2689137|2701377-2701458|2830612-2830693	6.30e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	585763-585793	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	7.1|2579525|31|NZ_CP047861|CRISPRCasFinder	NZ_CP047861.1	Staphylococcus aureus strain UP_1322 chromosome, complete genome	93.548	31	2	0	1	31	585879	585909	404267-404351|1235857-1235938|1284599-1284677|1680988-1681090|2339166-2339299|2414713-2414791|2579500-2579580|2689052-2689137|2701377-2701458|2830612-2830693	6.30e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	585879-585909	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	7.1|2579525|31|NZ_CP047861|CRISPRCasFinder	NZ_CP047861.1	Staphylococcus aureus strain UP_1322 chromosome, complete genome	93.548	31	2	0	1	31	1025577	1025607	404267-404351|1235857-1235938|1284599-1284677|1680988-1681090|2339166-2339299|2414713-2414791|2579500-2579580|2689052-2689137|2701377-2701458|2830612-2830693	6.30e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	1025577-1025607	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	7.1|2579525|31|NZ_CP047861|CRISPRCasFinder	NZ_CP047861.1	Staphylococcus aureus strain UP_1322 chromosome, complete genome	93.548	31	2	0	1	31	1235572	1235602	404267-404351|1235857-1235938|1284599-1284677|1680988-1681090|2339166-2339299|2414713-2414791|2579500-2579580|2689052-2689137|2701377-2701458|2830612-2830693	6.30e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	1235572-1235602	AGCTGGCGGAAAGTCAGCTTACAATAATGTG	2
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	7.1|2579525|31|NZ_CP047861|CRISPRCasFinder	NZ_CP047861.1	Staphylococcus aureus strain UP_1322 chromosome, complete genome	93.548	31	2	0	1	31	1271793	1271823	404267-404351|1235857-1235938|1284599-1284677|1680988-1681090|2339166-2339299|2414713-2414791|2579500-2579580|2689052-2689137|2701377-2701458|2830612-2830693	6.30e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	1271793-1271823	AGCTGGCGGAAAGTCAGCTTACAATAATGTG	2
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	7.1|2579525|31|NZ_CP047861|CRISPRCasFinder	NZ_CP047861.1	Staphylococcus aureus strain UP_1322 chromosome, complete genome	93.548	31	2	0	1	31	2017939	2017969	404267-404351|1235857-1235938|1284599-1284677|1680988-1681090|2339166-2339299|2414713-2414791|2579500-2579580|2689052-2689137|2701377-2701458|2830612-2830693	6.30e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	2017939-2017969	AGCTGGCGGAAAGTCAGCTTACAATAATGTG	2
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	7.1|2579525|31|NZ_CP047861|CRISPRCasFinder	NZ_CP047861.1	Staphylococcus aureus strain UP_1322 chromosome, complete genome	93.548	31	2	0	1	31	2590326	2590356	404267-404351|1235857-1235938|1284599-1284677|1680988-1681090|2339166-2339299|2414713-2414791|2579500-2579580|2689052-2689137|2701377-2701458|2830612-2830693	6.30e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	2590326-2590356	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	10.1|2830636|34|NZ_CP047861|CRISPRCasFinder	NZ_CP047861.1	Staphylococcus aureus strain UP_1322 chromosome, complete genome	100.000	34	0	0	1	34	886043	886010	404267-404351|1235857-1235938|1284599-1284677|1680988-1681090|2339166-2339299|2414713-2414791|2579500-2579580|2689052-2689137|2701377-2701458|2830612-2830693	4.61e-10	55.5	1.0	CCAACACAGAGAATTTCGAAAAGAAATTCTACAA	886010-886043	TTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGG	0
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	10.1|2830636|34|NZ_CP047861|CRISPRCasFinder	NZ_CP047861.1	Staphylococcus aureus strain UP_1322 chromosome, complete genome	100.000	34	0	0	1	34	1284645	1284678	404267-404351|1235857-1235938|1284599-1284677|1680988-1681090|2339166-2339299|2414713-2414791|2579500-2579580|2689052-2689137|2701377-2701458|2830612-2830693	4.61e-10	55.5	1.0	CCAACACAGAGAATTTCGAAAAGAAATTCTACAA	1284645-1284678	CCAACACAGAGAATTTCGAAAAGAAATTCTACAA	0
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	10.1|2830636|34|NZ_CP047861|CRISPRCasFinder	NZ_CP047861.1	Staphylococcus aureus strain UP_1322 chromosome, complete genome	97.059	34	1	0	1	34	284329	284296	404267-404351|1235857-1235938|1284599-1284677|1680988-1681090|2339166-2339299|2414713-2414791|2579500-2579580|2689052-2689137|2701377-2701458|2830612-2830693	4.15e-09	52.3	1.0	CCAACACAGAGAATTTCGAAAAGAAATTCTACAA	284296-284329	TTGTAGAATTTCTTTTCGAAATTCTTTGTGTTGG	1
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	10.1|2830636|34|NZ_CP047861|CRISPRCasFinder	NZ_CP047861.1	Staphylococcus aureus strain UP_1322 chromosome, complete genome	94.118	34	2	0	1	34	669893	669926	404267-404351|1235857-1235938|1284599-1284677|1680988-1681090|2339166-2339299|2414713-2414791|2579500-2579580|2689052-2689137|2701377-2701458|2830612-2830693	3.73e-08	49.1	1.0	CCAACACAGAGAATTTCGAAAAGAAATTCTACAA	669893-669926	CCAACACAGAGAATTTCGATAAGAAATTCCACAA	2
NZ_CP047861	Staphylococcus aureus strain UP_1322 chromosome, complete genome	10.1|2830636|34|NZ_CP047861|CRISPRCasFinder	NZ_CP047861.1	Staphylococcus aureus strain UP_1322 chromosome, complete genome	94.118	34	2	0	1	34	2140878	2140911	404267-404351|1235857-1235938|1284599-1284677|1680988-1681090|2339166-2339299|2414713-2414791|2579500-2579580|2689052-2689137|2701377-2701458|2830612-2830693	3.73e-08	49.1	1.0	CCAACACAGAGAATTTCGAAAAGAAATTCTACAA	2140878-2140911	CCAACAAAAAGAATTTCGAAAAGAAATTCTACAA	2
