The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP047851	Staphylococcus aureus strain UP_338 chromosome, complete genome	2814235	372724	388654	2814235	terminase,integrase,coat	Staphylococcus_phage(90.0%)	25	374260:374277	389361:389378
WP_001052483.1|372724_372916_-	hypothetical protein	NA	U3PCX8	Staphylococcus_phage	80.0	4.9e-23
WP_001261460.1|373159_373456_+	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_000934799.1|373476_373980_+	single-stranded DNA-binding protein	NA	A0A1W6JPL9	Staphylococcus_phage	74.7	1.2e-60
WP_000897044.1|374031_374274_+	30S ribosomal protein S18	NA	NA	NA	NA	NA
374260:374277	attL	AAAGAAGAACAATAATAT	NA	NA	NA	NA
WP_000400841.1|374505_375225_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	Q4ZE81	Staphylococcus_phage	29.8	3.7e-23
WP_000270135.1|375337_376552_-|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	97.3	3.3e-221
WP_000230361.1|376712_377336_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_001611932.1|377484_377649_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_001138305.1|377649_377922_+	winged helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	94.4	1.2e-43
WP_000784892.1|377933_378107_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001231376.1|378073_378277_+	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	98.5	2.0e-30
WP_000403837.1|378278_378662_+	hypothetical protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.1	4.8e-62
WP_001103967.1|378662_378989_+	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	96.3	3.5e-53
WP_001002709.1|379053_379923_+	hypothetical protein	NA	Q4ZE74	Staphylococcus_phage	96.2	5.3e-165
WP_000447468.1|379936_381646_+	DUF927 domain-containing protein	NA	Q4ZE73	Staphylococcus_phage	92.8	8.2e-303
WP_000356942.1|381955_382336_+	hypothetical protein	NA	Q4ZE71	Staphylococcus_phage	96.8	1.7e-67
WP_001019762.1|382332_382974_+	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	92.5	4.7e-110
WP_001288442.1|383681_384026_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	91.7	1.3e-50
WP_000214170.1|384056_384710_+	hypothetical protein	NA	Q4ZE82	Staphylococcus_phage	99.5	7.6e-116
WP_000771361.1|384762_385290_+|coat	spore coat protein	coat	Q4ZE87	Staphylococcus_phage	100.0	6.8e-91
WP_001656917.1|385421_385634_+	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	97.1	5.4e-31
WP_001293071.1|385630_386200_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	98.4	4.6e-101
WP_000801980.1|386476_387445_+	Abi family protein	NA	A0A0H4U080	Erysipelothrix_phage	27.3	2.7e-24
WP_073392942.1|387586_388024_+	DUF3102 domain-containing protein	NA	A0A2H4JAH5	uncultured_Caudovirales_phage	58.2	9.8e-27
WP_000813311.1|388141_388654_+	hypothetical protein	NA	Q4ZE83	Staphylococcus_phage	100.0	1.4e-69
389361:389378	attR	AAAGAAGAACAATAATAT	NA	NA	NA	NA
>prophage 2
NZ_CP047851	Staphylococcus aureus strain UP_338 chromosome, complete genome	2814235	698671	728552	2814235	bacteriocin,transposase	Staphylococcus_phage(41.67%)	29	NA	NA
WP_001105942.1|698671_699346_+|transposase	IS6-like element ISSau6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	88.4	1.3e-113
WP_001035802.1|699380_699593_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000120605.1|700308_700623_+	As(III)-sensing metalloregulatory transcriptional repressor ArsR	NA	A0A2H4PQT4	Staphylococcus_phage	73.1	4.7e-39
WP_000153633.1|700622_701912_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	81.1	5.6e-187
WP_000358995.1|701929_702325_+	thioredoxin-dependent arsenate reductase	NA	A0A2H4PQT9	Staphylococcus_phage	86.3	8.5e-62
WP_000726502.1|702704_702998_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000713732.1|703072_705007_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000831610.1|705010_705322_+	YxeA family protein	NA	NA	NA	NA	NA
WP_000593106.1|705333_705960_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.7	6.1e-22
WP_000277741.1|706321_707968_+|transposase	IS1182-like element ISSau3 family transposase	transposase	A0ZS58	Staphylococcus_virus	100.0	3.5e-295
WP_001643491.1|708122_708500_+	recombinase	NA	NA	NA	NA	NA
WP_001582045.1|708439_708766_+	recombinase	NA	NA	NA	NA	NA
WP_000273007.1|708832_709333_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000145511.1|709697_710558_+	replication initiation protein	NA	NA	NA	NA	NA
WP_000761344.1|710644_710986_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001002795.1|711200_711296_-	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_001157741.1|712895_713780_+	replication initiator protein A	NA	NA	NA	NA	NA
WP_000397995.1|714996_715320_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001791613.1|715548_715641_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_000377738.1|715942_716764_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000838599.1|716888_717884_+	YeiH family protein	NA	NA	NA	NA	NA
WP_000690626.1|718218_718794_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.7	2.9e-42
WP_000069452.1|719060_721106_+	copper-translocating P-type ATPase CopB	NA	E4ZFI9	Streptococcus_phage	29.2	2.3e-65
WP_000277154.1|721120_722554_+	multi-copper oxidase Mco	NA	NA	NA	NA	NA
WP_000277738.1|722620_724267_-|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	98.4	1.0e-289
WP_000378396.1|724629_726810_-	cadmium-translocating P-type ATPase CadA	NA	E4ZFI9	Streptococcus_phage	63.7	9.3e-251
WP_000159128.1|726802_727168_-	winged helix-turn-helix transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	47.8	8.5e-24
WP_000361064.1|727405_727783_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001105942.1|727877_728552_+|transposase	IS6-like element ISSau6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	88.4	1.3e-113
>prophage 3
NZ_CP047851	Staphylococcus aureus strain UP_338 chromosome, complete genome	2814235	758345	766165	2814235		Hokovirus(16.67%)	10	NA	NA
WP_000244416.1|758345_759401_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|759400_760087_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|760061_760535_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093552.1|760876_761317_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637686.1|761596_762181_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062968.1|762279_762993_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|762996_763416_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|763417_764086_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604508.1|764436_765030_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.0	6.8e-39
WP_107375198.1|765013_766165_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
>prophage 4
NZ_CP047851	Staphylococcus aureus strain UP_338 chromosome, complete genome	2814235	778137	792275	2814235		uncultured_Caudovirales_phage(50.0%)	13	NA	NA
WP_000663016.1|778137_779196_+	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	26.5	5.7e-20
WP_000197262.1|779354_779897_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429002.1|780448_781366_-	lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	8.2e-07
WP_031788440.1|781456_781558_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193750.1|781635_783141_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930016.1|783480_783981_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	66.2	2.7e-52
WP_001068491.1|784000_784867_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|785668_786067_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|786029_788135_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|788254_789226_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000876311.1|789602_790574_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	80.2	7.8e-141
WP_001245566.1|790560_791517_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	60.0	5.5e-06
WP_000616865.1|791513_792275_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.1	7.2e-17
>prophage 5
NZ_CP047851	Staphylococcus aureus strain UP_338 chromosome, complete genome	2814235	962244	1010081	2814235	transposase,bacteriocin,protease,holin,tRNA	Bacillus_virus(25.0%)	44	NA	NA
WP_000121211.1|962244_963192_-|transposase	IS30-like element ISSau1 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	100.0	1.1e-184
WP_073392975.1|963306_964776_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001067041.1|964826_965813_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.0	1.8e-15
WP_000427776.1|965815_966796_+	dipeptide ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.1	2.7e-16
WP_001574526.1|966788_967439_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001180271.1|967450_968332_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_094409958.1|968420_969988_-|transposase	IS3-like element ISSau2 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	51.8	1.0e-49
WP_000448933.1|970047_971037_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000258003.1|971331_971727_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_001217728.1|972097_972817_+	adaptor protein MecA	NA	NA	NA	NA	NA
WP_000959276.1|972937_973924_+	competence protein CoiA	NA	NA	NA	NA	NA
WP_000082722.1|973971_975780_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.5	9.3e-47
WP_000896691.1|976239_977046_-	DsbA family protein	NA	NA	NA	NA	NA
WP_000214067.1|977068_977434_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000224620.1|977537_978131_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_001242102.1|978316_978664_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001077683.1|978680_979316_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001270834.1|979332_980142_+	NAD kinase	NA	NA	NA	NA	NA
WP_000669938.1|980138_980993_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000062404.1|981013_982399_+	magnesium transporter	NA	NA	NA	NA	NA
WP_000395156.1|982408_984253_+	sodium:proton antiporter	NA	NA	NA	NA	NA
WP_000933195.1|984530_985301_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000933105.1|985496_986582_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000570704.1|986923_988492_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_000889176.1|988634_989393_+	esterase family protein	NA	NA	NA	NA	NA
WP_001060545.1|989558_990284_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000600387.1|991878_992388_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001794241.1|992500_993709_-	MFS transporter	NA	NA	NA	NA	NA
WP_000258649.1|993668_994844_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_000340133.1|995275_996760_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_001794242.1|996740_997001_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001049957.1|997000_998563_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	2.2e-36
WP_000928413.1|998864_999668_+	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_160200223.1|999886_1002211_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	26.8	4.0e-10
WP_000021872.1|1002227_1003586_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000414169.1|1003724_1005236_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000287265.1|1005724_1006294_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000876825.1|1006503_1006722_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_160200224.1|1006802_1007789_-	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000214898.1|1007987_1008164_+	YkvS family protein	NA	NA	NA	NA	NA
WP_001033867.1|1008178_1008781_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_099119695.1|1009081_1009159_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
WP_001790623.1|1009697_1009799_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001794574.1|1009808_1010081_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
>prophage 6
NZ_CP047851	Staphylococcus aureus strain UP_338 chromosome, complete genome	2814235	1046057	1054530	2814235		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861576.1|1046057_1046540_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	8.0e-22
WP_001010391.1|1046526_1047651_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174050.1|1047654_1048359_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	41.6	7.3e-48
WP_000848351.1|1048358_1048622_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666808.1|1048623_1049295_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_000032734.1|1049287_1051477_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.2	5.1e-140
WP_000483716.1|1051455_1052940_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.4	8.5e-46
WP_000030814.1|1052932_1053961_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	7.6e-62
WP_000238673.1|1053963_1054530_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	3.6e-29
>prophage 7
NZ_CP047851	Staphylococcus aureus strain UP_338 chromosome, complete genome	2814235	1517237	1602132	2814235	plate,head,terminase,portal,integrase,holin,capsid,protease,tRNA,tail	Staphylococcus_phage(75.71%)	96	1527438:1527455	1598190:1598207
WP_000858795.1|1517237_1518530_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	4.3e-54
WP_000525060.1|1518851_1521545_-	ATP-dependent helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
WP_000049917.1|1521568_1522540_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000361536.1|1522526_1523729_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	42.5	1.4e-35
WP_000690024.1|1523733_1524876_-	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA	NA
WP_000839927.1|1525119_1525437_-	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_001827022.1|1525772_1526453_-	zinc metallopeptidase	NA	NA	NA	NA	NA
WP_000154479.1|1526524_1527112_-	DUF1405 domain-containing protein	NA	NA	NA	NA	NA
WP_000005208.1|1527101_1527677_-	IDEAL domain-containing protein	NA	G3MAV7	Bacillus_virus	27.2	4.6e-08
1527438:1527455	attL	ATTCATTAACTTTATATT	NA	NA	NA	NA
WP_000389521.1|1527690_1528935_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000245891.1|1528941_1530240_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_000776318.1|1530249_1531314_-	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_001269937.1|1531339_1532506_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.3	1.5e-34
WP_000442480.1|1532974_1533424_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_001819897.1|1533515_1534460_-	heptaprenyl diphosphate synthase subunit II	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_000774679.1|1534476_1535202_-	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_000450555.1|1535204_1535777_-	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_001043863.1|1536207_1536480_-	DNA-binding protein HU	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000161753.1|1536650_1537649_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_000165530.1|1537665_1538976_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_000133953.1|1539197_1540373_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_001791199.1|1540629_1540821_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001791200.1|1540937_1541054_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000644393.1|1541084_1541744_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_000681744.1|1541820_1542789_+	asparaginase	NA	NA	NA	NA	NA
WP_001174260.1|1542903_1543890_-	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA	NA
WP_016186859.1|1544050_1544137_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000069298.1|1544274_1545735_-	elastin-binding protein EbpS	NA	NA	NA	NA	NA
WP_000902107.1|1545887_1547267_-	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.3	2.9e-56
WP_001163814.1|1547256_1548210_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001151997.1|1548317_1548566_+	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
WP_001186908.1|1548671_1549217_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_001799520.1|1549495_1549660_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000476878.1|1549864_1550773_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000913238.1|1550830_1551736_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_078064398.1|1551825_1552188_-	hypothetical protein	NA	Q4ZCJ7	Staphylococcus_virus	100.0	3.4e-25
WP_000675478.1|1552416_1553253_-	hypothetical protein	NA	D2JLG6	Staphylococcus_phage	100.0	8.4e-152
WP_000909210.1|1553868_1555323_-	CHAP domain-containing protein	NA	Q8SDN4	Staphylococcus_virus	99.8	7.5e-289
WP_000339144.1|1555333_1555636_-|holin	phage holin	holin	B7T0L0	Staphylococcus_virus	100.0	4.1e-48
WP_061734471.1|1555771_1556071_-	DUF2951 family protein	NA	M9QRV2	Staphylococcus_phage	97.0	1.7e-30
WP_000916020.1|1556116_1556281_-	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_001166599.1|1556273_1556663_-	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_107375223.1|1556662_1558129_-|plate	BppU family phage baseplate upper protein	plate	M1TB09	Staphylococcus_phage	99.2	9.6e-252
WP_000429551.1|1558128_1560039_-	minor structural protein	NA	A0A2I6PF35	Staphylococcus_phage	100.0	0.0e+00
WP_000179860.1|1560054_1560345_-	hypothetical protein	NA	A0A2I6PF46	Staphylococcus_phage	100.0	2.1e-49
WP_000384474.1|1560344_1561928_-	peptidase	NA	A0A2I6PEQ5	Staphylococcus_phage	100.0	9.3e-309
WP_001190533.1|1561936_1562761_-|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_070028375.1|1562760_1568961_-|tail	phage tail tape measure protein	tail	U5U762	Staphylococcus_phage	99.6	0.0e+00
WP_000438833.1|1568974_1569133_-	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_000589165.1|1569174_1569525_-	hypothetical protein	NA	A0A2I6PDE6	Staphylococcus_phage	100.0	1.1e-55
WP_160200236.1|1569543_1570038_-	Ig domain-containing protein	NA	A0A2I6PF45	Staphylococcus_phage	100.0	4.8e-78
WP_000807536.1|1570129_1570771_-|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
WP_001023802.1|1570805_1571201_-	DUF3168 domain-containing protein	NA	A0A2I6PDD8	Staphylococcus_phage	100.0	2.6e-66
WP_000110020.1|1571201_1571603_-	hypothetical protein	NA	A0A2I6PDD3	Staphylococcus_phage	100.0	6.2e-68
WP_000395501.1|1571599_1571932_-	hypothetical protein	NA	A0A2I6PDD6	Staphylococcus_phage	100.0	6.2e-58
WP_000050973.1|1571943_1572222_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_001142739.1|1572290_1573454_-|capsid	phage major capsid protein	capsid	A0A2I6PDD7	Staphylococcus_phage	100.0	9.4e-218
WP_000061872.1|1573465_1574239_-|protease	Clp protease ClpP	protease	M1TAZ4	Staphylococcus_phage	100.0	9.2e-137
WP_001100669.1|1574222_1575461_-|portal	phage portal protein	portal	A0A2K9VBP0	Staphylococcus_phage	100.0	6.9e-235
WP_000153549.1|1575465_1577157_-|terminase	terminase large subunit	terminase	A0A2I6PDP8	Staphylococcus_phage	99.8	0.0e+00
WP_000778930.1|1577146_1577452_-|terminase	terminase	terminase	A0A2I6PDN6	Staphylococcus_phage	100.0	3.7e-49
WP_000196700.1|1577578_1577893_-	HNH endonuclease	NA	A0A2I6PDR3	Staphylococcus_phage	100.0	8.5e-57
WP_053507569.1|1578054_1578492_-	transcriptional regulator	NA	A0A2I6PDC2	Staphylococcus_phage	98.6	7.9e-77
WP_078066162.1|1578504_1579872_-	DEAD/DEAH box helicase	NA	A0A2I6PDQ0	Staphylococcus_phage	99.8	1.3e-263
WP_000665204.1|1579852_1580143_-	VRR-NUC domain-containing protein	NA	A0A2I6PDQ7	Staphylococcus_phage	100.0	4.9e-51
WP_015978074.1|1580276_1580381_+	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	100.0	2.7e-12
WP_107375224.1|1580483_1582931_-	hypothetical protein	NA	M1RZC5	Staphylococcus_phage	98.7	0.0e+00
WP_000265258.1|1582982_1583183_-	DUF1514 domain-containing protein	NA	A0A2I6PF41	Staphylococcus_phage	100.0	2.9e-26
WP_000595237.1|1583250_1583403_-	transcriptional activator RinB	NA	B5WZN3	Staphylococcus_phage	100.0	2.6e-19
WP_000483477.1|1583395_1583632_-	hypothetical protein	NA	A7TWB3	Staphylococcus_phage	100.0	1.9e-37
WP_000195831.1|1583656_1583893_-	DUF1381 domain-containing protein	NA	C8CH06	Staphylococcus_phage	100.0	1.1e-35
WP_160200237.1|1583929_1584466_-	dUTPase	NA	S4V978	Staphylococcus_phage	98.9	1.0e-94
WP_107375226.1|1584458_1584707_-	DUF1024 family protein	NA	Q9B0F3	Staphylococcus_virus	96.3	7.7e-37
WP_000131377.1|1584721_1584964_-	hypothetical protein	NA	R9QT89	Staphylococcus_phage	100.0	3.0e-41
WP_000152769.1|1585521_1585677_-	hypothetical protein	NA	A0A2I6PDP0	Staphylococcus_phage	94.1	3.5e-19
WP_107375269.1|1585688_1587641_-	DNA polymerase	NA	M1SVE1	Staphylococcus_phage	99.7	0.0e+00
WP_000645048.1|1587708_1588266_-	DUF2815 family protein	NA	A0A2I6PEP8	Staphylococcus_phage	100.0	1.8e-97
WP_031834538.1|1588291_1589458_-	DUF2800 domain-containing protein	NA	M1T2Z7	Staphylococcus_phage	100.0	8.3e-222
WP_000985976.1|1589454_1589817_-	hypothetical protein	NA	A0A2I6PF03	Staphylococcus_phage	100.0	4.9e-56
WP_000174994.1|1589831_1590155_-	hypothetical protein	NA	A0A2I6PF12	Staphylococcus_phage	100.0	5.9e-53
WP_001285954.1|1590233_1590395_-	DUF1270 domain-containing protein	NA	A7TWM3	Staphylococcus_phage	100.0	8.6e-21
WP_001124160.1|1590407_1590671_-	helix-turn-helix domain-containing protein	NA	A7TWG0	Staphylococcus_phage	100.0	5.7e-46
WP_001097552.1|1590695_1590911_-	hypothetical protein	NA	A0A2I6PF01	Staphylococcus_phage	100.0	1.9e-31
WP_001128433.1|1590965_1591331_+	hypothetical protein	NA	A0A2I6PF07	Staphylococcus_phage	100.0	2.4e-63
WP_001025401.1|1591299_1591545_-	DUF2829 domain-containing protein	NA	A0A2I6PF15	Staphylococcus_phage	100.0	5.1e-41
WP_001148544.1|1591573_1592350_-	Rha family transcriptional regulator	NA	A0A2I6PD87	Staphylococcus_phage	100.0	1.1e-140
WP_001121027.1|1592363_1592600_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PD81	Staphylococcus_phage	100.0	1.5e-37
WP_000333630.1|1592751_1593066_+	helix-turn-helix transcriptional regulator	NA	A0A0N9BAW4	Staphylococcus_phage	100.0	9.8e-53
WP_000525004.1|1593078_1593540_+	hypothetical protein	NA	A0A2K9VBR7	Staphylococcus_phage	100.0	1.2e-83
WP_000825948.1|1593557_1594142_+	hypothetical protein	NA	A0A2I6PD77	Staphylococcus_phage	100.0	1.4e-68
WP_001166482.1|1594480_1595104_-	hypothetical protein	NA	B7T0F3	Staphylococcus_virus	99.5	9.8e-105
WP_000264191.1|1595213_1596419_+|integrase	site-specific integrase	integrase	M1RZA8	Staphylococcus_phage	100.0	1.0e-222
WP_001794062.1|1596461_1598504_-	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	44.1	1.1e-38
1598190:1598207	attR	ATTCATTAACTTTATATT	NA	NA	NA	NA
WP_001574168.1|1598490_1599423_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000987777.1|1599674_1601426_-	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	33.6	1.7e-21
WP_000064078.1|1601406_1602132_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	43.0	3.5e-45
>prophage 8
NZ_CP047851	Staphylococcus aureus strain UP_338 chromosome, complete genome	2814235	1659974	1668286	2814235	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1659974_1660760_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924211.1|1660885_1661776_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062173.1|1661785_1663132_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	1.4e-55
WP_000683921.1|1663245_1664346_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	3.0e-08
WP_000624581.1|1664348_1665026_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1665156_1666263_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217253.1|1666486_1668286_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.5e-54
>prophage 9
NZ_CP047851	Staphylococcus aureus strain UP_338 chromosome, complete genome	2814235	1737722	1746765	2814235	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1737722_1738241_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000595001.1|1738262_1740536_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	6.2e-64
WP_000749802.1|1740738_1743018_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1743292_1743553_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1743571_1744711_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019178.1|1744733_1745759_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005767.1|1745760_1746765_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 10
NZ_CP047851	Staphylococcus aureus strain UP_338 chromosome, complete genome	2814235	1876493	1950638	2814235	tRNA,transposase,protease	Staphylococcus_phage(88.89%)	66	NA	NA
WP_160200242.1|1876493_1883063_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	88.6	2.9e-295
WP_000836472.1|1883386_1883698_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	96.1	4.5e-50
WP_001108722.1|1883719_1886134_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	98.8	0.0e+00
WP_001025064.1|1886425_1887607_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	9.6e-218
WP_000526541.1|1887717_1888671_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	99.3	6.4e-79
WP_000764425.1|1888667_1889231_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	95.7	1.1e-99
WP_000757543.1|1889349_1889751_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266099.1|1890323_1891151_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_014937042.1|1891153_1891273_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196351.1|1891384_1892386_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.1	5.0e-183
WP_001008556.1|1894169_1894634_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	97.4	1.9e-68
WP_001159032.1|1894646_1895828_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
WP_000493891.1|1895838_1896471_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.0	8.4e-112
WP_001819953.1|1896477_1897509_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.3	5.8e-195
WP_001261683.1|1898001_1899504_-	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	5.0e-30
WP_000221181.1|1900146_1900461_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	97.1	1.7e-52
WP_000989104.1|1900460_1901753_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	95.1	2.6e-216
WP_001032833.1|1901839_1902694_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1902969_1903194_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671059.1|1903392_1903863_+	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	85.8	7.7e-70
WP_001152695.1|1903975_1904419_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030476.1|1904405_1904849_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	77.4	2.4e-49
WP_001168914.1|1905146_1905782_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000492901.1|1905948_1906569_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001096494.1|1907026_1907740_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091444.1|1907998_1908301_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|1908555_1908921_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000623481.1|1908917_1909271_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	97.4	4.2e-20
WP_160200243.1|1909520_1910354_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	3.5e-158
WP_000366165.1|1910565_1911474_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.7	9.8e-138
WP_000933819.1|1911598_1912792_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
WP_000109909.1|1913163_1914756_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
WP_001801476.1|1915048_1915795_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	97.2	3.3e-139
WP_000672010.1|1915799_1916273_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	9.5e-84
WP_000718107.1|1916338_1916596_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778539.1|1916592_1917594_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	96.7	8.5e-183
WP_000348372.1|1917598_1919077_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.2	2.4e-282
WP_016186903.1|1919235_1919691_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	94.5	3.5e-75
WP_001794016.1|1919992_1920643_+	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	1.0e-51
WP_000070654.1|1920723_1921719_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.2	3.8e-74
WP_000669038.1|1921794_1922421_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	84.1	4.5e-81
WP_000627550.1|1922461_1922806_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	94.7	5.1e-55
WP_000414222.1|1922903_1923476_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.8	3.2e-25
WP_001794355.1|1923624_1924566_-	FRG domain-containing protein	NA	NA	NA	NA	NA
WP_107375236.1|1924582_1924993_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000125075.1|1924992_1925562_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	54.8	2.2e-39
WP_000747804.1|1925754_1926201_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_001801861.1|1926651_1926747_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001791232.1|1926869_1926971_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001037039.1|1927145_1927589_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000731421.1|1927588_1928032_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000182553.1|1928998_1931419_+	polysaccharide lyase 8 family protein	NA	NA	NA	NA	NA
WP_000277741.1|1931448_1933095_-|transposase	IS1182-like element ISSau3 family transposase	transposase	A0ZS58	Staphylococcus_virus	100.0	3.5e-295
WP_001819963.1|1933457_1933817_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000619920.1|1934044_1934494_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_001053714.1|1934536_1936147_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000095390.1|1936161_1936461_+	secretion protein	NA	NA	NA	NA	NA
WP_094409958.1|1938529_1940096_+|transposase	IS3-like element ISSau2 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	51.8	1.0e-49
WP_000072622.1|1940238_1941393_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	36.3	7.8e-39
WP_001794363.1|1941385_1943125_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	98.6	3.2e-286
WP_001038742.1|1943304_1944024_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	98.3	1.0e-129
WP_001038734.1|1944193_1944910_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	97.1	6.6e-129
WP_001038766.1|1945955_1946672_-|protease	serine protease	protease	A0A2H4PQN5	Staphylococcus_phage	62.6	5.5e-83
WP_001039022.1|1946795_1947515_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	93.7	6.4e-124
WP_000595635.1|1948529_1949045_+	membrane protein	NA	NA	NA	NA	NA
WP_000711499.1|1949291_1950638_+	DUF4041 domain-containing protein	NA	M1NRY5	Streptococcus_phage	51.1	2.5e-65
