assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009913215.1_ASM991321v1	NZ_CP047851	Staphylococcus aureus strain UP_338 chromosome, complete genome	1	813103-813187	1	CRISPRCasFinder	no	cas3	cas3,csa3,DEDDh,DinG,WYL	Unclear	CACCCCAACTTGCATTGTCTGTAGAA	26	1	2	813129-813161|813129-813161	NZ_CP047851.1_1044529-1044561|NZ_CP047851.1_2370938-2370906	NA	1	1	Unclear	cas3,csa3,DEDDh,DinG,WYL	NA|33aa|up_1|NZ_CP047851.1_811543_811642_+,NA	NA|357aa|up_9|NZ_CP047851.1_801552_802623_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|352aa|up_8|NZ_CP047851.1_802940_803996_+	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|214aa|up_7|NZ_CP047851.1_804159_804801_-	COG1739, COG1739, Uncharacterized conserved protein [Function unknown]	NA|289aa|up_6|NZ_CP047851.1_804944_805811_+	TIGR00762, DegV, EDD domain protein, DegV family	cas3|361aa|up_5|NZ_CP047851.1_806174_807257_+	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	NA|225aa|up_4|NZ_CP047851.1_807249_807924_+	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|191aa|up_3|NZ_CP047851.1_807984_808557_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_2|NZ_CP047851.1_808970_811502_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|33aa|up_1|NZ_CP047851.1_811543_811642_+	NA	NA|370aa|up_0|NZ_CP047851.1_811816_812927_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|280aa|down_0|NZ_CP047851.1_813695_814535_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|down_1|NZ_CP047851.1_814708_815359_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|down_2|NZ_CP047851.1_815355_815592_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|down_3|NZ_CP047851.1_815860_817846_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|down_4|NZ_CP047851.1_817853_820700_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_5|NZ_CP047851.1_821310_822243_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|281aa|down_6|NZ_CP047851.1_822248_823091_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_7|NZ_CP047851.1_823098_823584_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_8|NZ_CP047851.1_823591_825031_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_9|NZ_CP047851.1_825097_826033_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase
GCF_009913215.1_ASM991321v1	NZ_CP047851	Staphylococcus aureus strain UP_338 chromosome, complete genome	2	871509-871588	2	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	CCGTCAGCTTCTGTGTTGGGGCCC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA,NA	NA|187aa|up_9|NZ_CP047851.1_864483_865044_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|NZ_CP047851.1_865116_865734_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|NZ_CP047851.1_865889_866384_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|NZ_CP047851.1_866782_867205_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|NZ_CP047851.1_867352_868069_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|NZ_CP047851.1_868151_868691_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|NZ_CP047851.1_868840_869161_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|NZ_CP047851.1_869304_869661_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|NZ_CP047851.1_869818_870199_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|NZ_CP047851.1_870376_871255_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP047851.1_871845_872232_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP047851.1_872224_872521_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP047851.1_872770_873796_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP047851.1_873788_874484_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP047851.1_874501_875323_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NZ_CP047851.1_876137_876332_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NZ_CP047851.1_876565_877417_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NZ_CP047851.1_877744_878506_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NZ_CP047851.1_878603_879911_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|414aa|down_9|NZ_CP047851.1_880025_881267_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_009913215.1_ASM991321v1	NZ_CP047851	Staphylococcus aureus strain UP_338 chromosome, complete genome	3	920629-920714	3	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	2	920659-920684|920659-920684	NZ_CP047851.1_2112394-2112419|NZ_CP047851.1_2172478-2172503	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA,NA	NA|499aa|up_9|NZ_CP047851.1_909518_911015_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|110aa|up_8|NZ_CP047851.1_911007_911337_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|NZ_CP047851.1_911348_911777_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|NZ_CP047851.1_911769_914175_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|NZ_CP047851.1_914305_914689_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|NZ_CP047851.1_914752_915346_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|NZ_CP047851.1_915760_916138_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|NZ_CP047851.1_916499_917627_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|NZ_CP047851.1_917934_919125_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|NZ_CP047851.1_919233_920478_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|NZ_CP047851.1_920872_921802_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|NZ_CP047851.1_922043_923423_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|NZ_CP047851.1_923412_924618_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|NZ_CP047851.1_924968_926300_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|NZ_CP047851.1_926625_927201_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|NZ_CP047851.1_927205_927730_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|NZ_CP047851.1_927745_928321_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|NZ_CP047851.1_928480_931957_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|NZ_CP047851.1_931957_935611_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|NZ_CP047851.1_935776_936679_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_009913215.1_ASM991321v1	NZ_CP047851	Staphylococcus aureus strain UP_338 chromosome, complete genome	4	1219941-1220033	4	CRISPRCasFinder	no	cas3	cas3,csa3,DEDDh,DinG,WYL	Unclear	TAAGAAACAGTAATCAATAAATTGATAACT	30	0	0	NA	NA	NA	1	1	Unclear	cas3,csa3,DEDDh,DinG,WYL	NA,NA	NA|215aa|up_9|NZ_CP047851.1_1209815_1210460_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|214aa|up_8|NZ_CP047851.1_1210466_1211108_+	COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism]	NA|63aa|up_7|NZ_CP047851.1_1211488_1211677_-	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|125aa|up_6|NZ_CP047851.1_1212119_1212494_+	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown]	NA|549aa|up_5|NZ_CP047851.1_1212508_1214155_+	COG1461, COG1461, Predicted kinase related to dihydroxyacetone kinase [General function prediction only]	cas3|687aa|up_4|NZ_CP047851.1_1214344_1216405_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|191aa|up_3|NZ_CP047851.1_1216607_1217180_+	PRK04424, PRK04424, transcription factor FapR	NA|329aa|up_2|NZ_CP047851.1_1217184_1218171_+	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|309aa|up_1|NZ_CP047851.1_1218163_1219090_+	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|245aa|up_0|NZ_CP047851.1_1219082_1219817_+	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|78aa|down_0|NZ_CP047851.1_1220122_1220356_+	PRK00982, acpP, acyl carrier protein; Provisional	NA|244aa|down_1|NZ_CP047851.1_1220471_1221203_+	PRK00102, rnc, ribonuclease III; Reviewed	NA|1189aa|down_2|NZ_CP047851.1_1221349_1224916_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|417aa|down_3|NZ_CP047851.1_1224915_1226166_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|111aa|down_4|NZ_CP047851.1_1226152_1226485_+	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|456aa|down_5|NZ_CP047851.1_1226510_1227878_+	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|92aa|down_6|NZ_CP047851.1_1228312_1228588_+	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|168aa|down_7|NZ_CP047851.1_1228775_1229279_+	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|246aa|down_8|NZ_CP047851.1_1229278_1230016_+	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|117aa|down_9|NZ_CP047851.1_1230118_1230469_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional
GCF_009913215.1_ASM991321v1	NZ_CP047851	Staphylococcus aureus strain UP_338 chromosome, complete genome	5	1991521-1991648	5	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	AATTATGGAGCGGAAGATAGGATTTACACCTATACCTC	38	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|132aa|up_7|NZ_CP047851.1_1983680_1984076_-,NA|51aa|up_6|NZ_CP047851.1_1984676_1984829_-,NA	NA|274aa|up_9|NZ_CP047851.1_1980822_1981644_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|462aa|up_8|NZ_CP047851.1_1982099_1983485_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|132aa|up_7|NZ_CP047851.1_1983680_1984076_-	NA	NA|51aa|up_6|NZ_CP047851.1_1984676_1984829_-	NA	NA|200aa|up_5|NZ_CP047851.1_1984853_1985453_-	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]	NA|157aa|up_4|NZ_CP047851.1_1985611_1986082_-	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]	NA|381aa|up_3|NZ_CP047851.1_1986086_1987229_-	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|243aa|up_2|NZ_CP047851.1_1987364_1988093_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|486aa|up_1|NZ_CP047851.1_1988079_1989537_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|354aa|up_0|NZ_CP047851.1_1989795_1990857_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|149aa|down_0|NZ_CP047851.1_1999637_2000084_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|317aa|down_1|NZ_CP047851.1_2000180_2001131_-	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family	NA|152aa|down_2|NZ_CP047851.1_2001136_2001592_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|430aa|down_3|NZ_CP047851.1_2001672_2002962_+	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional	NA|365aa|down_4|NZ_CP047851.1_2003254_2004349_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|579aa|down_5|NZ_CP047851.1_2004539_2006276_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|181aa|down_6|NZ_CP047851.1_2006566_2007109_-	PRK13662, PRK13662, hypothetical protein; Provisional	NA|346aa|down_7|NZ_CP047851.1_2007411_2008449_-	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|326aa|down_8|NZ_CP047851.1_2008600_2009578_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|279aa|down_9|NZ_CP047851.1_2009838_2010675_-	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
GCF_009913215.1_ASM991321v1	NZ_CP047851	Staphylococcus aureus strain UP_338 chromosome, complete genome	6	2025627-2025709	6	CRISPRCasFinder	no	DEDDh	cas3,csa3,DEDDh,DinG,WYL	Unclear	CCCCAACTTGCATTGCCTGTAGAA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|92aa|up_6|NZ_CP047851.1_2019874_2020150_+,NA|129aa|up_1|NZ_CP047851.1_2024132_2024519_-,NA|138aa|down_1|NZ_CP047851.1_2027252_2027666_-,NA|37aa|down_2|NZ_CP047851.1_2027694_2027805_-,NA|31aa|down_6|NZ_CP047851.1_2030810_2030903_-	NA|419aa|up_9|NZ_CP047851.1_2017797_2019054_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|67aa|up_8|NZ_CP047851.1_2019056_2019257_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|NZ_CP047851.1_2019403_2019868_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|NZ_CP047851.1_2019874_2020150_+	NA	NA|406aa|up_5|NZ_CP047851.1_2020427_2021645_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|NZ_CP047851.1_2021757_2022387_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|NZ_CP047851.1_2022376_2023420_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|NZ_CP047851.1_2023416_2024118_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|NZ_CP047851.1_2024132_2024519_-	NA	NA|253aa|up_0|NZ_CP047851.1_2024735_2025494_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|NZ_CP047851.1_2026077_2027064_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|down_1|NZ_CP047851.1_2027252_2027666_-	NA	NA|37aa|down_2|NZ_CP047851.1_2027694_2027805_-	NA	NA|244aa|down_3|NZ_CP047851.1_2027890_2028622_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_4|NZ_CP047851.1_2028623_2029937_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_5|NZ_CP047851.1_2030228_2030729_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|down_6|NZ_CP047851.1_2030810_2030903_-	NA	DEDDh|185aa|down_7|NZ_CP047851.1_2031119_2031674_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_8|NZ_CP047851.1_2031740_2032811_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_9|NZ_CP047851.1_2033057_2033588_-	pfam11667, DUF3267, Putative zincin peptidase
GCF_009913215.1_ASM991321v1	NZ_CP047851	Staphylococcus aureus strain UP_338 chromosome, complete genome	7	2036289-2036480	1	CRT	no	DEDDh	cas3,csa3,DEDDh,DinG,WYL	Unclear	NNTCTNTGTTGGGGCCCNCACC	22	2	9	2036310-2036346|2036368-2036401|2036368-2036401|2036368-2036401|2036368-2036401|2036368-2036401|2036368-2036401|2036368-2036401|2036368-2036401	NZ_CP047851.1_826395-826431|NZ_CP047851.1_256086-256053|NZ_CP047851.1_349247-349214|NZ_CP047851.1_779997-779964|NZ_CP047851.1_813168-813201|NZ_CP047851.1_1070744-1070777|NZ_CP047851.1_1808299-1808266|NZ_CP047851.1_2336617-2336650|NZ_CP047851.1_2478690-2478657	NA	3	3	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|37aa|up_9|NZ_CP047851.1_2027694_2027805_-,NA|31aa|up_5|NZ_CP047851.1_2030810_2030903_-,NA|49aa|down_0|NZ_CP047851.1_2036784_2036931_-	NA|37aa|up_9|NZ_CP047851.1_2027694_2027805_-	NA	NA|244aa|up_8|NZ_CP047851.1_2027890_2028622_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|up_7|NZ_CP047851.1_2028623_2029937_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|up_6|NZ_CP047851.1_2030228_2030729_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|up_5|NZ_CP047851.1_2030810_2030903_-	NA	DEDDh|185aa|up_4|NZ_CP047851.1_2031119_2031674_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|up_3|NZ_CP047851.1_2031740_2032811_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|up_2|NZ_CP047851.1_2033057_2033588_-	pfam11667, DUF3267, Putative zincin peptidase	NA|454aa|up_1|NZ_CP047851.1_2033757_2035119_-	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|316aa|up_0|NZ_CP047851.1_2035199_2036147_-	PRK13337, PRK13337, putative lipid kinase; Reviewed	NA|49aa|down_0|NZ_CP047851.1_2036784_2036931_-	NA	NA|476aa|down_1|NZ_CP047851.1_2036969_2038397_-	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA|486aa|down_2|NZ_CP047851.1_2038409_2039867_-	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA|101aa|down_3|NZ_CP047851.1_2039868_2040171_-	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA|513aa|down_4|NZ_CP047851.1_2040537_2042076_+	TIGR02121, Osmoregulated_proline_transporter, sodium/proline symporter	NA|400aa|down_5|NZ_CP047851.1_2042164_2043364_-	COG4851, CamS, Protein involved in sex pheromone biosynthesis [General function prediction only]	NA|668aa|down_6|NZ_CP047851.1_2043376_2045380_-	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated	NA|731aa|down_7|NZ_CP047851.1_2045383_2047576_-	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|231aa|down_8|NZ_CP047851.1_2047572_2048265_-	COG1646, COG1646, Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]	NA|101aa|down_9|NZ_CP047851.1_2048447_2048750_-	COG4496, COG4496, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_009913215.1_ASM991321v1	NZ_CP047851	Staphylococcus aureus strain UP_338 chromosome, complete genome	8	2296646-2296771	7	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	CCTCTTTACTCGAAAGCTCACAAAACTCTTGATATCA	37	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|56aa|up_8|NZ_CP047851.1_2287052_2287220_+,NA|61aa|up_1|NZ_CP047851.1_2295568_2295751_-,NA	NA|139aa|up_9|NZ_CP047851.1_2286393_2286810_-	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|56aa|up_8|NZ_CP047851.1_2287052_2287220_+	NA	NA|809aa|up_7|NZ_CP047851.1_2287216_2289643_+	cd01083, GAG_Lyase, Glycosaminoglycan (GAG) polysaccharide lyase family	NA|285aa|up_6|NZ_CP047851.1_2289702_2290557_-	pfam01551, Peptidase_M23, Peptidase family M23	NA|272aa|up_5|NZ_CP047851.1_2290767_2291583_-	cd02605, HAD_SPP, sucrose-phosphatase, similar to Synechocystis sp PCC 6803 SPP	NA|142aa|up_4|NZ_CP047851.1_2291877_2292303_+	pfam03642, MAP, MAP domain	NA|235aa|up_3|NZ_CP047851.1_2292693_2293398_-	COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|555aa|up_2|NZ_CP047851.1_2293434_2295099_-	PRK08617, PRK08617, acetolactate synthase AlsS	NA|61aa|up_1|NZ_CP047851.1_2295568_2295751_-	NA	NA|60aa|up_0|NZ_CP047851.1_2296400_2296580_-	PRK09775, PRK09775, type II toxin-antitoxin system HipA family toxin YjjJ	NA|479aa|down_0|NZ_CP047851.1_2296828_2298265_-	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|133aa|down_1|NZ_CP047851.1_2298613_2299012_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|146aa|down_2|NZ_CP047851.1_2299025_2299463_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|265aa|down_3|NZ_CP047851.1_2299711_2300506_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|269aa|down_4|NZ_CP047851.1_2300510_2301317_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|287aa|down_5|NZ_CP047851.1_2301306_2302167_-	PRK13646, cbiO, energy-coupling factor transporter ATPase	NA|270aa|down_6|NZ_CP047851.1_2302163_2302973_-	PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional	NA|523aa|down_7|NZ_CP047851.1_2303348_2304916_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|123aa|down_8|NZ_CP047851.1_2305168_2305537_-	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|315aa|down_9|NZ_CP047851.1_2305553_2306498_-	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional
GCF_009913215.1_ASM991321v1	NZ_CP047851	Staphylococcus aureus strain UP_338 chromosome, complete genome	9	2336653-2336733	8	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	6	2336678-2336708|2336678-2336708|2336678-2336708|2336678-2336708|2336678-2336708|2336678-2336708	NZ_CP047851.1_1070807-1070837|NZ_CP047851.1_1688354-1688384|NZ_CP047851.1_826519-826549|NZ_CP047851.1_2025752-2025782|NZ_CP047851.1_875820-875790|NZ_CP047851.1_920650-920620	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|55aa|up_9|NZ_CP047851.1_2327182_2327347_+,NA|106aa|up_8|NZ_CP047851.1_2327591_2327909_+,NA|84aa|up_5|NZ_CP047851.1_2333033_2333285_+,NA|57aa|up_0|NZ_CP047851.1_2336425_2336596_+,NA	NA|55aa|up_9|NZ_CP047851.1_2327182_2327347_+	NA	NA|106aa|up_8|NZ_CP047851.1_2327591_2327909_+	NA	NA|1056aa|up_7|NZ_CP047851.1_2328095_2331263_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP047851.1_2331379_2332645_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP047851.1_2333033_2333285_+	NA	NA|255aa|up_4|NZ_CP047851.1_2333276_2334041_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP047851.1_2334203_2334644_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP047851.1_2334636_2335848_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP047851.1_2335949_2336300_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP047851.1_2336425_2336596_+	NA	NA|341aa|down_0|NZ_CP047851.1_2336876_2337899_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP047851.1_2337918_2338518_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP047851.1_2338524_2338758_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP047851.1_2338763_2339210_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP047851.1_2339223_2339709_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP047851.1_2339705_2340965_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP047851.1_2341027_2341522_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP047851.1_2341523_2342030_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP047851.1_2342058_2343063_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP047851.1_2343230_2343836_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
