assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009913455.1_ASM991345v1	NZ_CP047094	Salmonella sp. S13 chromosome, complete genome	1	1119223-1119319	1	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	GCTTGACGCGTCTTATCAGGCCTACAA	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|454aa|up_9|NZ_CP047094.1_1107003_1108365_+	PRK08044, PRK08044, allantoinase AllB	NA|434aa|up_8|NZ_CP047094.1_1108421_1109723_+	PRK11412, PRK11412, uracil/xanthine transporter	NA|382aa|up_7|NZ_CP047094.1_1109744_1110890_+	PRK09932, PRK09932, glycerate 3-kinase	NA|262aa|up_6|NZ_CP047094.1_1111117_1111903_-	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|412aa|up_5|NZ_CP047094.1_1111913_1113149_-	TIGR03176, AllC, allantoate amidohydrolase	NA|350aa|up_4|NZ_CP047094.1_1113170_1114220_-	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|556aa|up_3|NZ_CP047094.1_1114536_1116204_+	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|420aa|up_2|NZ_CP047094.1_1116213_1117473_+	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|272aa|up_1|NZ_CP047094.1_1117483_1118299_+	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|298aa|up_0|NZ_CP047094.1_1118295_1119189_+	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|356aa|down_0|NZ_CP047094.1_1119383_1120451_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|170aa|down_1|NZ_CP047094.1_1120447_1120957_-	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|241aa|down_2|NZ_CP047094.1_1121074_1121797_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|165aa|down_3|NZ_CP047094.1_1121799_1122294_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|462aa|down_4|NZ_CP047094.1_1122467_1123853_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|174aa|down_5|NZ_CP047094.1_1123888_1124410_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|71aa|down_6|NZ_CP047094.1_1124517_1124730_-	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|289aa|down_7|NZ_CP047094.1_1124731_1125598_-	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|181aa|down_8|NZ_CP047094.1_1126068_1126611_+	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|231aa|down_9|NZ_CP047094.1_1126830_1127523_+	PRK15195, PRK15195, molecular chaperone FimC
GCF_009913455.1_ASM991345v1	NZ_CP047094	Salmonella sp. S13 chromosome, complete genome	2	1184169-1184313	2	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|330aa|up_9|NZ_CP047094.1_1172067_1173057_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|303aa|up_8|NZ_CP047094.1_1173453_1174362_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_7|NZ_CP047094.1_1174553_1176575_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|NZ_CP047094.1_1177153_1177831_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|NZ_CP047094.1_1177823_1178579_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|NZ_CP047094.1_1178565_1179720_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|NZ_CP047094.1_1179716_1180757_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|NZ_CP047094.1_1180843_1182133_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|NZ_CP047094.1_1182191_1182668_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|NZ_CP047094.1_1182819_1184103_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP047094.1_1184336_1186598_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP047094.1_1186780_1188214_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP047094.1_1188289_1189342_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP047094.1_1189525_1190479_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP047094.1_1190519_1191515_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP047094.1_1191669_1192488_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP047094.1_1192488_1193547_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP047094.1_1193549_1194239_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP047094.1_1194238_1195012_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP047094.1_1195177_1195327_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_009913455.1_ASM991345v1	NZ_CP047094	Salmonella sp. S13 chromosome, complete genome	3	1678708-1678799	3	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	GCATCAGAAGCAGGTAAAAAAGGTGG	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA|70aa|down_9|NZ_CP047094.1_1689513_1689723_+	NA|231aa|up_9|NZ_CP047094.1_1667895_1668588_-	PRK10766, PRK10766, two-component system response regulator TorR	NA|391aa|up_8|NZ_CP047094.1_1668717_1669890_+	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|849aa|up_7|NZ_CP047094.1_1669889_1672436_+	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|200aa|up_6|NZ_CP047094.1_1672432_1673032_+	PRK04976, torD, chaperone protein TorD; Validated	NA|102aa|up_5|NZ_CP047094.1_1673124_1673430_-	PRK10265, PRK10265, chaperone modulator CbpM	NA|307aa|up_4|NZ_CP047094.1_1673429_1674350_-	PRK10266, PRK10266, curved DNA-binding protein	NA|420aa|up_3|NZ_CP047094.1_1674609_1675869_+	PRK09784, PRK09784, YccE family protein	NA|414aa|up_2|NZ_CP047094.1_1676160_1677402_+	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|76aa|up_1|NZ_CP047094.1_1677439_1677667_-	PRK10174, PRK10174, hypothetical protein; Provisional	NA|199aa|up_0|NZ_CP047094.1_1677687_1678284_-	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|443aa|down_0|NZ_CP047094.1_1679087_1680416_-	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|165aa|down_1|NZ_CP047094.1_1680436_1680931_-	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|197aa|down_2|NZ_CP047094.1_1680941_1681532_-	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|267aa|down_3|NZ_CP047094.1_1681541_1682342_-	TIGR03611, RutD, pyrimidine utilization protein D	NA|129aa|down_4|NZ_CP047094.1_1682349_1682736_-	TIGR03610, RutC, pyrimidine utilization protein C	NA|231aa|down_5|NZ_CP047094.1_1682747_1683440_-	TIGR03614, RutB, pyrimidine utilization protein B	NA|364aa|down_6|NZ_CP047094.1_1683439_1684531_-	TIGR03612, RutA, pyrimidine utilization protein A	NA|213aa|down_7|NZ_CP047094.1_1684818_1685457_+	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|1321aa|down_8|NZ_CP047094.1_1685496_1689459_-	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|70aa|down_9|NZ_CP047094.1_1689513_1689723_+	NA
GCF_009913455.1_ASM991345v1	NZ_CP047094	Salmonella sp. S13 chromosome, complete genome	4	2710821-2710954	4	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	TGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACA	38	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|248aa|up_9|NZ_CP047094.1_2699099_2699843_-	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only]	NA|323aa|up_8|NZ_CP047094.1_2699839_2700808_-	cd04196, GT_2_like_d, Subfamily of Glycosyltransferase Family GT2 of unknown function	NA|183aa|up_7|NZ_CP047094.1_2700878_2701427_-	pfam00908, dTDP_sugar_isom, dTDP-4-dehydrorhamnose 3,5-epimerase	NA|308aa|up_6|NZ_CP047094.1_2702278_2703202_-	pfam13737, DDE_Tnp_1_5, Transposase DDE domain	NA|300aa|up_5|NZ_CP047094.1_2703433_2704333_-	PRK09987, PRK09987, dTDP-4-dehydrorhamnose reductase; Provisional	NA|362aa|up_4|NZ_CP047094.1_2704332_2705418_-	PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; Provisional	NA|298aa|up_3|NZ_CP047094.1_2705789_2706683_-	PRK10122, PRK10122, UTP--glucose-1-phosphate uridylyltransferase GalF	NA|465aa|up_2|NZ_CP047094.1_2706857_2708252_-	PRK10123, wcaM, putative colanic acid biosynthesis protein; Provisional	NA|407aa|up_1|NZ_CP047094.1_2708262_2709483_-	TIGR04005, wcaL, colanic acid biosynthesis glycosyltransferase WcaL	NA|427aa|up_0|NZ_CP047094.1_2709479_2710760_-	TIGR04006, wcaK, colanic acid biosynthesis pyruvyl transferase WcaK	NA|493aa|down_0|NZ_CP047094.1_2711035_2712514_-	PRK10459, PRK10459, MOP flippase family protein	NA|465aa|down_1|NZ_CP047094.1_2712515_2713910_-	PRK10124, PRK10124, putative UDP-glucose lipid carrier transferase; Provisional	NA|457aa|down_2|NZ_CP047094.1_2713964_2715335_-	PRK15414, PRK15414, phosphomannomutase	NA|479aa|down_3|NZ_CP047094.1_2715527_2716964_-	PRK15460, cpsB, mannose-1-phosphate guanyltransferase; Provisional	NA|408aa|down_4|NZ_CP047094.1_2716966_2718190_-	TIGR04007, wcaI, colanic acid biosynthesis glycosyl transferase WcaI	NA|160aa|down_5|NZ_CP047094.1_2718186_2718666_-	PRK15434, PRK15434, GDP-mannose mannosyl hydrolase	NA|322aa|down_6|NZ_CP047094.1_2718668_2719634_-	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs	NA|374aa|down_7|NZ_CP047094.1_2719636_2720758_-	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]	NA|183aa|down_8|NZ_CP047094.1_2720783_2721332_-	TIGR04008, WcaF, colanic acid biosynthesis acetyltransferase WcaF	NA|249aa|down_9|NZ_CP047094.1_2721347_2722094_-	PRK10063, PRK10063, colanic acid biosynthesis glycosyltransferase WcaE
GCF_009913455.1_ASM991345v1	NZ_CP047094	Salmonella sp. S13 chromosome, complete genome	5	2936370-2936496	5	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC	39	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|395aa|up_9|NZ_CP047094.1_2915277_2916462_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|259aa|up_8|NZ_CP047094.1_2916535_2917312_-	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|up_7|NZ_CP047094.1_2917316_2918966_-	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|1465aa|up_6|NZ_CP047094.1_2918966_2923361_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|208aa|up_5|NZ_CP047094.1_2923504_2924128_-	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|563aa|up_4|NZ_CP047094.1_2924124_2925813_-	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|876aa|up_3|NZ_CP047094.1_2925961_2928589_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|241aa|up_2|NZ_CP047094.1_2928735_2929458_+	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|1251aa|up_1|NZ_CP047094.1_2929585_2933338_-	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|762aa|up_0|NZ_CP047094.1_2934033_2936319_+	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|377aa|down_0|NZ_CP047094.1_2936552_2937683_+	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|85aa|down_1|NZ_CP047094.1_2937682_2937937_+	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|359aa|down_2|NZ_CP047094.1_2939103_2940180_-	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|453aa|down_3|NZ_CP047094.1_2940184_2941543_-	PRK11273, glpT, glycerol-3-phosphate transporter	NA|543aa|down_4|NZ_CP047094.1_2941815_2943444_+	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|420aa|down_5|NZ_CP047094.1_2943433_2944693_+	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_6|NZ_CP047094.1_2944689_2945880_+	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|300aa|down_7|NZ_CP047094.1_2946072_2946972_+	PRK09956, PRK09956, ISNCY family transposase	NA|62aa|down_8|NZ_CP047094.1_2946984_2947170_+	PRK09956, PRK09956, ISNCY family transposase	NA|268aa|down_9|NZ_CP047094.1_2947210_2948014_-	PRK10128, PRK10128, 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
GCF_009913455.1_ASM991345v1	NZ_CP047094	Salmonella sp. S13 chromosome, complete genome	6	3416978-3417122	6	CRISPRCasFinder	no	csa3	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-A	CACAATGCCTGATGCGACGCTGGAGCGTCTTATCATGCCTACAAA	45	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|150aa|up_9|NZ_CP047094.1_3407968_3408418_+	pfam06610, AlaE, L-alanine exporter	NA|115aa|up_8|NZ_CP047094.1_3408454_3408799_-	PRK10556, PRK10556, hypothetical protein; Provisional	NA|110aa|up_7|NZ_CP047094.1_3408950_3409280_+	PRK10132, PRK10132, hypothetical protein; Provisional	NA|82aa|up_6|NZ_CP047094.1_3409527_3409773_+	PRK10329, PRK10329, glutaredoxin-like protein NrdH	NA|137aa|up_5|NZ_CP047094.1_3409769_3410180_+	PRK03600, nrdI, class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA|715aa|up_4|NZ_CP047094.1_3410152_3412297_+	PRK08188, PRK08188, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|320aa|up_3|NZ_CP047094.1_3412306_3413266_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|401aa|up_2|NZ_CP047094.1_3413619_3414822_+	PRK10070, PRK10070, proline/glycine betaine ABC transporter ATP-binding protein ProV	NA|355aa|up_1|NZ_CP047094.1_3414814_3415879_+	PRK10952, PRK10952, proline/glycine betaine ABC transporter permease ProW	NA|331aa|up_0|NZ_CP047094.1_3415936_3416929_+	PRK11119, proX, proline/glycine betaine ABC transporter substrate-binding protein ProX	NA|395aa|down_0|NZ_CP047094.1_3417220_3418405_+	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|246aa|down_1|NZ_CP047094.1_3418528_3419266_+	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]	NA|112aa|down_2|NZ_CP047094.1_3419255_3419591_+	PRK10408, PRK10408, L-valine transporter subunit YgaH	NA|177aa|down_3|NZ_CP047094.1_3419681_3420212_+	PRK10870, PRK10870, transcriptional repressor MprA; Provisional	NA|391aa|down_4|NZ_CP047094.1_3420338_3421511_+	PRK15136, PRK15136, multidrug efflux MFS transporter periplasmic adaptor subunit EmrA	NA|513aa|down_5|NZ_CP047094.1_3421527_3423066_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|172aa|down_6|NZ_CP047094.1_3423129_3423645_-	PRK02260, PRK02260, S-ribosylhomocysteine lyase	NA|519aa|down_7|NZ_CP047094.1_3423794_3425351_-	PRK02107, PRK02107, glutamate--cysteine ligase; Provisional	NA|143aa|down_8|NZ_CP047094.1_3425423_3425852_-	COG1238, COG1238, Predicted membrane protein [Function unknown]	NA|189aa|down_9|NZ_CP047094.1_3425848_3426415_-	PRK10725, PRK10725, fructose-1-phosphate/6-phosphogluconate phosphatase
GCF_009913455.1_ASM991345v1	NZ_CP047094	Salmonella sp. S13 chromosome, complete genome	7	3486552-3487678	7,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	18,18,16	18	TypeI-E	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|254aa|up_9|NZ_CP047094.1_3478425_3479187_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP047094.1_3479167_3480217_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP047094.1_3480213_3480693_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP047094.1_3480692_3481403_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP047094.1_3481421_3481733_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP047094.1_3481926_3482250_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP047094.1_3482299_3482905_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP047094.1_3482904_3484332_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP047094.1_3484333_3485242_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP047094.1_3485493_3486531_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|95aa|down_0|NZ_CP047094.1_3487783_3488068_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|306aa|down_1|NZ_CP047094.1_3488069_3488987_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|200aa|down_2|NZ_CP047094.1_3489002_3489602_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|225aa|down_3|NZ_CP047094.1_3489588_3490263_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|364aa|down_4|NZ_CP047094.1_3490265_3491357_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|161aa|down_5|NZ_CP047094.1_3491369_3491852_-	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|503aa|down_6|NZ_CP047094.1_3491844_3493353_-	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cas3|889aa|down_7|NZ_CP047094.1_3493767_3496434_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|245aa|down_8|NZ_CP047094.1_3496792_3497527_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_9|NZ_CP047094.1_3497600_3499313_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit
GCF_009913455.1_ASM991345v1	NZ_CP047094	Salmonella sp. S13 chromosome, complete genome	8	3513227-3513682	2,8,2	CRT,CRISPRCasFinder,PILER-CR	no	cas3	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACAC,GGTTTATCCCCGCTGGCGCGGGGAACAC,GGTTTATCCCCGCTGGCGCGGGGAACAC	29,28,28	0	0	NA	NA	I-E:I-E:I-E	7,7,6	7	Unclear	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA|47aa|down_1|NZ_CP047094.1_3514831_3514972_+	NA|424aa|up_9|NZ_CP047094.1_3501870_3503142_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_CP047094.1_3503132_3503393_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_CP047094.1_3503409_3503985_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NZ_CP047094.1_3504132_3504993_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP047094.1_3504989_3505769_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|446aa|up_4|NZ_CP047094.1_3505746_3507084_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP047094.1_3507177_3508632_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP047094.1_3508701_3509487_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP047094.1_3509805_3511083_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP047094.1_3511109_3512588_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP047094.1_3514021_3514693_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP047094.1_3514831_3514972_+	NA	NA|291aa|down_2|NZ_CP047094.1_3514985_3515858_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NZ_CP047094.1_3515917_3517216_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NZ_CP047094.1_3517303_3518941_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NZ_CP047094.1_3519168_3519960_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NZ_CP047094.1_3520030_3520366_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NZ_CP047094.1_3520365_3520614_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NZ_CP047094.1_3520691_3522926_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|NZ_CP047094.1_3522973_3524275_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
GCF_009913455.1_ASM991345v1	NZ_CP047093	Salmonella sp. S13 plasmid pS13-4, complete sequence	1	1719-1838	1	CRISPRCasFinder	no			Orphan	TGCGTACCCATCCACCTTTCAGTGCGTACCCATCCACCTTTCA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA|183aa|down_3|NZ_CP047093.1_4161_4710_+,NA|71aa|down_4|NZ_CP047093.1_4775_4988_+,NA|47aa|down_7|NZ_CP047093.1_6062_6203_+,NA|75aa|down_9|NZ_CP047093.1_7422_7647_+	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|280aa|up_0|NZ_CP047093.1_626_1466_-	pfam01051, Rep_3, Initiator Replication protein	NA|84aa|down_0|NZ_CP047093.1_2700_2952_+	PRK02854, PRK02854, primosomal protein DnaT	NA|94aa|down_1|NZ_CP047093.1_2941_3223_+	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]	NA|172aa|down_2|NZ_CP047093.1_3572_4088_+	cd06257, DnaJ, DnaJ domain or J-domain	NA|183aa|down_3|NZ_CP047093.1_4161_4710_+	NA	NA|71aa|down_4|NZ_CP047093.1_4775_4988_+	NA	NA|81aa|down_5|NZ_CP047093.1_4977_5220_+	TIGR03830, transcriptional_regulator_XRE_family, putative zinc finger/helix-turn-helix protein, YgiT family	NA|235aa|down_6|NZ_CP047093.1_5352_6057_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|47aa|down_7|NZ_CP047093.1_6062_6203_+	NA	NA|246aa|down_8|NZ_CP047093.1_6688_7426_+	cd03767, SR_Res_par, Serine recombinase (SR) family, Partitioning (par)-Resolvase subfamily, catalytic domain; Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme	NA|75aa|down_9|NZ_CP047093.1_7422_7647_+	NA
