assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009913875.1_ASM991387v1	NZ_CP028247	Pediococcus acidilactici strain SRCM102731 chromosome, complete genome	1	58151-58254	1	CRISPRCasFinder	no		DEDDh,csn2,cas2,cas9,csa3,DinG,cas3	Orphan	CAGATGCTCTACCAACTGAGCTAA	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csn2,cas2,cas9,csa3,DinG,cas3	NA|244aa|up_0|NZ_CP028247.1_55501_56233_+,NA|63aa|down_6|NZ_CP028247.1_70179_70368_-,NA|85aa|down_9|NZ_CP028247.1_74715_74970_-	NA|154aa|up_9|NZ_CP028247.1_44208_44670_-	pfam00582, Usp, Universal stress protein family	NA|277aa|up_8|NZ_CP028247.1_44795_45626_+	cd01171, YXKO-related, B	NA|240aa|up_7|NZ_CP028247.1_45731_46451_-	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like	NA|561aa|up_6|NZ_CP028247.1_46461_48144_-	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|806aa|up_5|NZ_CP028247.1_48400_50818_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|212aa|up_4|NZ_CP028247.1_51223_51859_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|188aa|up_3|NZ_CP028247.1_51851_52415_+	pfam06962, rRNA_methylase, Putative rRNA methylase	NA|490aa|up_2|NZ_CP028247.1_52494_53964_-	cd17502, MFS_Azr1_MDR_like, Saccharomyces cerevisiae Azole resistance protein 1 (Azr1p), and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|397aa|up_1|NZ_CP028247.1_54139_55330_-	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|244aa|up_0|NZ_CP028247.1_55501_56233_+	NA	NA|335aa|down_0|NZ_CP028247.1_63830_64835_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|339aa|down_1|NZ_CP028247.1_64880_65897_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|396aa|down_2|NZ_CP028247.1_65927_67115_-	cd03817, GT4_UGDG-like, UDP-Glc:1,2-diacylglycerol 3-a-glucosyltransferase and similar proteins	NA|258aa|down_3|NZ_CP028247.1_67200_67974_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|575aa|down_4|NZ_CP028247.1_68046_69771_-	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|89aa|down_5|NZ_CP028247.1_69770_70037_-	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|63aa|down_6|NZ_CP028247.1_70179_70368_-	NA	NA|736aa|down_7|NZ_CP028247.1_70583_72791_+	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]	NA|326aa|down_8|NZ_CP028247.1_73120_74098_-	PRK05458, PRK05458, guanosine 5'-monophosphate oxidoreductase; Provisional	NA|85aa|down_9|NZ_CP028247.1_74715_74970_-	NA
GCF_009913875.1_ASM991387v1	NZ_CP028247	Pediococcus acidilactici strain SRCM102731 chromosome, complete genome	2	271540-271641	2	CRISPRCasFinder	no	csn2,cas2,cas9	DEDDh,csn2,cas2,cas9,csa3,DinG,cas3	Type II-C,Type II-A,Type II-B	GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	36	0	0	NA	NA	NA	1	1	TypeII-C,TypeII-A,TypeII-B	DEDDh,csn2,cas2,cas9,csa3,DinG,cas3	NA|47aa|up_2|NZ_CP028247.1_270561_270702_+,NA	NA|440aa|up_9|NZ_CP028247.1_261242_262562_-	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	NA|213aa|up_8|NZ_CP028247.1_262593_263232_+	COG1739, COG1739, Uncharacterized conserved protein [Function unknown]	NA|392aa|up_7|NZ_CP028247.1_263299_264475_-	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|611aa|up_6|NZ_CP028247.1_264696_266529_-	pfam13520, AA_permease_2, Amino acid permease	NA|541aa|up_5|NZ_CP028247.1_266828_268451_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|up_4|NZ_CP028247.1_268473_268758_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|216aa|up_3|NZ_CP028247.1_268947_269595_+	pfam02517, Abi, CAAX protease self-immunity	NA|47aa|up_2|NZ_CP028247.1_270561_270702_+	NA	NA|46aa|up_1|NZ_CP028247.1_270759_270897_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|81aa|up_0|NZ_CP028247.1_270990_271233_-	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	csn2|224aa|down_0|NZ_CP028247.1_271669_272341_-	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|102aa|down_1|NZ_CP028247.1_272337_272643_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	NA|358aa|down_2|NZ_CP028247.1_273298_274372_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	cas9|1367aa|down_3|NZ_CP028247.1_275007_279108_-	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	NA|192aa|down_4|NZ_CP028247.1_279291_279867_+	PRK08581, PRK08581, amidase domain-containing protein	NA|845aa|down_5|NZ_CP028247.1_280092_282627_-	cd09601, M1_APN-Q_like, Peptidase M1 aminopeptidase N catalytic domain family which includes aminopeptidase N (APN), aminopeptidase Q (APQ), tricorn interacting factor F3, and endoplasmic reticulum aminopeptidase 1 (ERAP1)	NA|470aa|down_6|NZ_CP028247.1_282653_284063_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|215aa|down_7|NZ_CP028247.1_284255_284900_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|518aa|down_8|NZ_CP028247.1_285192_286746_-	PRK00074, guaA, GMP synthase; Reviewed	NA|641aa|down_9|NZ_CP028247.1_286818_288741_-	cd02079, P-type_ATPase_HM, P-type heavy metal-transporting ATPase
GCF_009913875.1_ASM991387v1	NZ_CP028247	Pediococcus acidilactici strain SRCM102731 chromosome, complete genome	3	332276-332425	3	CRISPRCasFinder	no		DEDDh,csn2,cas2,cas9,csa3,DinG,cas3	Orphan	CCGCGATTAATGCCTCTGTGTTCTGTTGCTAGGTAGTCGAAACGTGTTTTC	51	1	1	332327-332374	NZ_CP028247.1_332623-332670	NA	1	1	Orphan	DEDDh,csn2,cas2,cas9,csa3,DinG,cas3	NA,NA|284aa|down_5|NZ_CP028247.1_338647_339499_+,NA|77aa|down_7|NZ_CP028247.1_340513_340744_-,NA|155aa|down_9|NZ_CP028247.1_341418_341883_-	NA|125aa|up_9|NZ_CP028247.1_322862_323237_+	cd07253, GLOD5, Human glyoxalase domain-containing protein 5 and similar proteins	NA|261aa|up_8|NZ_CP028247.1_323457_324240_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|287aa|up_7|NZ_CP028247.1_324280_325141_-	TIGR00762, DegV, EDD domain protein, DegV family	NA|110aa|up_6|NZ_CP028247.1_325127_325457_-	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	NA|245aa|up_5|NZ_CP028247.1_325497_326232_-	TIGR03716, R_switched_YkoY, integral membrane protein, YkoY family	NA|313aa|up_4|NZ_CP028247.1_326341_327280_+	cd12827, EcCorA_ZntB-like_u2, uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB family	NA|255aa|up_3|NZ_CP028247.1_327473_328238_-	pfam07907, YibE_F, YibE/F-like protein	NA|370aa|up_2|NZ_CP028247.1_328230_329340_-	pfam07907, YibE_F, YibE/F-like protein	NA|144aa|up_1|NZ_CP028247.1_329339_329771_-	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|719aa|up_0|NZ_CP028247.1_329958_332115_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|328aa|down_0|NZ_CP028247.1_332830_333814_-	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]	NA|319aa|down_1|NZ_CP028247.1_333974_334931_+	cd02650, nuc_hydro_CaPnhB, NH_hydro_CaPnhB: A subgroup of nucleoside hydrolases similar to Corynebacterium ammoniagenes Purine/pyrimidine nucleoside hydrolase (pnhB)	NA|659aa|down_2|NZ_CP028247.1_335022_336999_+	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|311aa|down_3|NZ_CP028247.1_337117_338050_-	COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only]	NA|140aa|down_4|NZ_CP028247.1_338224_338644_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|284aa|down_5|NZ_CP028247.1_338647_339499_+	NA	NA|215aa|down_6|NZ_CP028247.1_339834_340479_+	PRK10847, PRK10847, DedA family protein	NA|77aa|down_7|NZ_CP028247.1_340513_340744_-	NA	NA|225aa|down_8|NZ_CP028247.1_340730_341405_-	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD	NA|155aa|down_9|NZ_CP028247.1_341418_341883_-	NA
GCF_009913875.1_ASM991387v1	NZ_CP028247	Pediococcus acidilactici strain SRCM102731 chromosome, complete genome	4	672927-673088	1	PILER-CR	no		DEDDh,csn2,cas2,cas9,csa3,DinG,cas3	Orphan	GAAATTGATTCACTTTCTTGCTTATCAGATGTCGAACGTGATTCGCTA	48	1	3	673053-673074|673053-673074|673053-673074	NZ_CP028247.1_673205-673226|NZ_CP028247.1_673445-673466|NZ_CP028247.1_673532-673553	NA	2	2	Orphan	DEDDh,csn2,cas2,cas9,csa3,DinG,cas3	NA|78aa|up_5|NZ_CP028247.1_664957_665191_+,NA|82aa|down_6|NZ_CP028247.1_688660_688906_-	NA|531aa|up_9|NZ_CP028247.1_660891_662484_-	PRK00701, PRK00701, divalent metal cation transporter MntH	NA|227aa|up_8|NZ_CP028247.1_662631_663312_-	cd02432, Nodulin-21_like_1, Nodulin-21 and CCC1-related protein family	NA|230aa|up_7|NZ_CP028247.1_663326_664016_-	cd02432, Nodulin-21_like_1, Nodulin-21 and CCC1-related protein family	NA|176aa|up_6|NZ_CP028247.1_664412_664940_+	pfam02674, Colicin_V, Colicin V production protein	NA|78aa|up_5|NZ_CP028247.1_664957_665191_+	NA	NA|597aa|up_4|NZ_CP028247.1_665537_667328_+	cd08579, GDPD_memb_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases	NA|400aa|up_3|NZ_CP028247.1_667481_668681_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|424aa|up_2|NZ_CP028247.1_669128_670400_-	PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional	NA|178aa|up_1|NZ_CP028247.1_670587_671121_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|92aa|up_0|NZ_CP028247.1_671316_671592_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|1307aa|down_0|NZ_CP028247.1_680760_684681_-	pfam17936, Big_6, Bacterial Ig domain	NA|329aa|down_1|NZ_CP028247.1_684804_685791_-	pfam17936, Big_6, Bacterial Ig domain	NA|266aa|down_2|NZ_CP028247.1_685772_686570_-	PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed	NA|213aa|down_3|NZ_CP028247.1_686992_687631_-	TIGR01065, Hypothetical_UPF0073_protein_yqfA	NA|151aa|down_4|NZ_CP028247.1_687754_688207_+	pfam08876, DUF1836, Domain of unknown function (DUF1836)	NA|92aa|down_5|NZ_CP028247.1_688388_688664_-	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]	NA|82aa|down_6|NZ_CP028247.1_688660_688906_-	NA	NA|107aa|down_7|NZ_CP028247.1_689161_689482_-	COG2076, EmrE, Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]	NA|252aa|down_8|NZ_CP028247.1_689630_690386_-	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|549aa|down_9|NZ_CP028247.1_690451_692098_-	pfam05935, Arylsulfotrans, Arylsulfotransferase (ASST)
