assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009930895.1_ASM993089v1	NZ_CP026082	Streptococcus agalactiae strain YZ1605 chromosome, complete genome	1	968280-968909	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas9,cas1,cas2,csn2,RT	cas3,RT,DinG,cas9,cas1,cas2,csn2,csm6,DEDDh,csa3	Type II-A,Type II-B,Type II-C	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC,GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC,GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	36,36,36	0	0	NA	NA	II-A:II-A:II-A	7,8,9	9	TypeII-A,TypeII-B,TypeII-C	cas3,RT,DinG,cas9,cas1,cas2,csn2,csm6,DEDDh,csa3	NA,NA	NA|124aa|up_9|NZ_CP026082.1_956520_956892_+	TIGR02328, TIGR02328, conserved hypothetical protein	NA|482aa|up_8|NZ_CP026082.1_956902_958348_-	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|377aa|up_7|NZ_CP026082.1_958542_959673_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|246aa|up_6|NZ_CP026082.1_959676_960414_+	pfam01643, Acyl-ACP_TE, Acyl-ACP thioesterase	NA|257aa|up_5|NZ_CP026082.1_960414_961185_+	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|219aa|up_4|NZ_CP026082.1_961174_961831_+	COG4478, COG4478, Predicted membrane protein [Function unknown]	cas9|1371aa|up_3|NZ_CP026082.1_962205_966318_+	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	cas1|290aa|up_2|NZ_CP026082.1_966319_967189_+	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas2|114aa|up_1|NZ_CP026082.1_967185_967527_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|222aa|up_0|NZ_CP026082.1_967513_968179_+	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	NA|139aa|down_0|NZ_CP026082.1_969445_969862_+	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated	NA|611aa|down_1|NZ_CP026082.1_969997_971830_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|878aa|down_2|NZ_CP026082.1_972076_974710_+	NF033189, internalin_A, class 1 internalin InlA	RT|426aa|down_3|NZ_CP026082.1_974793_976071_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|220aa|down_4|NZ_CP026082.1_976666_977326_+	COG1418, COG1418, Predicted HD superfamily hydrolase [General function prediction only]	NA|155aa|down_5|NZ_CP026082.1_977334_977799_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|145aa|down_6|NZ_CP026082.1_977798_978233_+	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|931aa|down_7|NZ_CP026082.1_978384_981177_+	COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]	NA|368aa|down_8|NZ_CP026082.1_981176_982280_+	pfam11187, DUF2974, Protein of unknown function (DUF2974)	NA|213aa|down_9|NZ_CP026082.1_982330_982969_-	cd03349, LbH_XAT, Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others
GCF_009930895.1_ASM993089v1	NZ_CP026082	Streptococcus agalactiae strain YZ1605 chromosome, complete genome	2	2111057-2111167	2	CRISPRCasFinder	no		cas3,RT,DinG,cas9,cas1,cas2,csn2,csm6,DEDDh,csa3	Orphan	GCTTCTTGAGCTTTCGTAACATCTGAT	27	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DinG,cas9,cas1,cas2,csn2,csm6,DEDDh,csa3	NA|160aa|up_9|NZ_CP026082.1_2100330_2100810_-,NA|72aa|up_8|NZ_CP026082.1_2100806_2101022_-,NA|91aa|up_6|NZ_CP026082.1_2101560_2101833_-,NA|126aa|up_5|NZ_CP026082.1_2102099_2102477_-,NA|155aa|up_2|NZ_CP026082.1_2105748_2106213_-,NA|105aa|up_1|NZ_CP026082.1_2106212_2106527_-,NA|123aa|down_0|NZ_CP026082.1_2111591_2111960_-,NA|127aa|down_1|NZ_CP026082.1_2111978_2112359_-,NA|119aa|down_5|NZ_CP026082.1_2115324_2115681_-	NA|160aa|up_9|NZ_CP026082.1_2100330_2100810_-	NA	NA|72aa|up_8|NZ_CP026082.1_2100806_2101022_-	NA	NA|161aa|up_7|NZ_CP026082.1_2101024_2101507_-	pfam07275, ArdA, Antirestriction protein (ArdA)	NA|91aa|up_6|NZ_CP026082.1_2101560_2101833_-	NA	NA|126aa|up_5|NZ_CP026082.1_2102099_2102477_-	NA	NA|414aa|up_4|NZ_CP026082.1_2102477_2103719_-	pfam02486, Rep_trans, Replication initiation factor	NA|570aa|up_3|NZ_CP026082.1_2104016_2105726_-	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]	NA|155aa|up_2|NZ_CP026082.1_2105748_2106213_-	NA	NA|105aa|up_1|NZ_CP026082.1_2106212_2106527_-	NA	NA|875aa|up_0|NZ_CP026082.1_2106597_2109222_-	TIGR04228, isopep_sspB_C2, adhesin isopeptide-forming domain, sspB-C2 type	NA|123aa|down_0|NZ_CP026082.1_2111591_2111960_-	NA	NA|127aa|down_1|NZ_CP026082.1_2111978_2112359_-	NA	NA|127aa|down_2|NZ_CP026082.1_2112412_2112793_-	COG2361, COG2361, Uncharacterized conserved protein [Function unknown]	NA|116aa|down_3|NZ_CP026082.1_2112752_2113100_-	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins	NA|118aa|down_4|NZ_CP026082.1_2114062_2114416_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|119aa|down_5|NZ_CP026082.1_2115324_2115681_-	NA	NA|65aa|down_6|NZ_CP026082.1_2115683_2115878_-	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family	NA|366aa|down_7|NZ_CP026082.1_2116934_2118032_-	pfam00746, Gram_pos_anchor, LPXTG cell wall anchor motif	NA|430aa|down_8|NZ_CP026082.1_2118209_2119499_-	TIGR01168, M_protein_serotype, Gram-positive signal peptide, YSIRK family	NA|223aa|down_9|NZ_CP026082.1_2121568_2122237_-	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
GCF_009930895.1_ASM993089v1	NZ_CP026082	Streptococcus agalactiae strain YZ1605 chromosome, complete genome	3	2154356-2154781	2	CRT	no		cas3,RT,DinG,cas9,cas1,cas2,csn2,csm6,DEDDh,csa3	Orphan	TTCTGGNTTNGCNTCTGG	18	2	2	2154554-2154583|2154650-2154679	NZ_CP026082.1_2154758-2154787|NZ_CP026082.1_2154758-2154787	NA	8	8	Orphan	cas3,RT,DinG,cas9,cas1,cas2,csn2,csm6,DEDDh,csa3	NA|203aa|up_4|NZ_CP026082.1_2147577_2148186_+,NA	NA|746aa|up_9|NZ_CP026082.1_2136543_2138781_-	PRK05222, PRK05222, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional	NA|108aa|up_8|NZ_CP026082.1_2139150_2139474_-	COG4392, COG4392, Predicted membrane protein [Function unknown]	NA|1571aa|up_7|NZ_CP026082.1_2140468_2145181_+	cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases	NA|229aa|up_6|NZ_CP026082.1_2145413_2146100_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|463aa|up_5|NZ_CP026082.1_2146096_2147485_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|203aa|up_4|NZ_CP026082.1_2147577_2148186_+	NA	NA|834aa|up_3|NZ_CP026082.1_2148275_2150777_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|416aa|up_2|NZ_CP026082.1_2151153_2152401_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|282aa|up_1|NZ_CP026082.1_2152443_2153289_-	cd07208, Pat_hypo_Ecoli_yjju_like, Hypothetical patatin similar to yjju protein of Escherichia coli	NA|180aa|up_0|NZ_CP026082.1_2153426_2153966_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|59aa|down_0|NZ_CP026082.1_2156137_2156314_-	COG0690, SecE, Preprotein translocase subunit SecE [Intracellular trafficking and secretion]	NA|51aa|down_1|NZ_CP026082.1_2156346_2156499_-	PRK00504, rpmG, 50S ribosomal protein L33; Validated	NA|774aa|down_2|NZ_CP026082.1_2156547_2158869_-	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane]	NA|295aa|down_3|NZ_CP026082.1_2158912_2159797_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|547aa|down_4|NZ_CP026082.1_2159821_2161462_-	COG4640, COG4640, Predicted membrane protein [Function unknown]	NA|404aa|down_5|NZ_CP026082.1_2161631_2162843_-	PRK05362, PRK05362, phosphopentomutase; Provisional	NA|224aa|down_6|NZ_CP026082.1_2162909_2163581_-	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional	NA|401aa|down_7|NZ_CP026082.1_2163610_2164813_-	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]	NA|260aa|down_8|NZ_CP026082.1_2164833_2165613_-	cd17767, UP_EcUdp-like, uridine phosphorylases similar to Escherichia coli Udp and related phosphorylases	NA|246aa|down_9|NZ_CP026082.1_2165770_2166508_+	COG2188, PhnF, Transcriptional regulators [Transcription]
