assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009931395.1_ASM993139v1	NZ_CP038807	Staphylococcus lugdunensis strain APC 3758 chromosome, complete genome	1	662807-662897	1	CRISPRCasFinder	no		WYL,csa3,cas3,DEDDh,DinG	Orphan	AAAAAGAAATTCACCAAGCAAAGCAAGTTGGGG	33	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,DEDDh,DinG	NA,NA|193aa|down_5|NZ_CP038807.1_669536_670115_+,NA|90aa|down_8|NZ_CP038807.1_672282_672552_-,NA|107aa|down_9|NZ_CP038807.1_672615_672936_-	NA|113aa|up_9|NZ_CP038807.1_648250_648589_-	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|431aa|up_8|NZ_CP038807.1_648734_650027_-	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed	NA|347aa|up_7|NZ_CP038807.1_650044_651085_-	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	NA|316aa|up_6|NZ_CP038807.1_651100_652048_-	cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC)	NA|451aa|up_5|NZ_CP038807.1_652136_653489_-	TIGR01350, Dihydrolipoyl_dehydrogenase, dihydrolipoamide dehydrogenase	NA|400aa|up_4|NZ_CP038807.1_654800_656000_-	COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]	NA|171aa|up_3|NZ_CP038807.1_656512_657025_-	COG3247, HdeD, Uncharacterized conserved protein [Function unknown]	NA|307aa|up_2|NZ_CP038807.1_657320_658241_+	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism]	NA|1011aa|up_1|NZ_CP038807.1_658318_661351_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|459aa|up_0|NZ_CP038807.1_661363_662740_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|191aa|down_0|NZ_CP038807.1_663169_663742_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|356aa|down_1|NZ_CP038807.1_664243_665311_+	pfam04443, LuxE, Acyl-protein synthetase, LuxE	NA|478aa|down_2|NZ_CP038807.1_665323_666757_+	cd07080, ALDH_Acyl-CoA-Red_LuxC, Acyl-CoA reductase LuxC	NA|257aa|down_3|NZ_CP038807.1_666777_667548_+	cd05349, BKR_2_SDR_c, putative beta-ketoacyl acyl carrier protein [ACP]reductase (BKR), subgroup 2, classical (c) SDR	NA|512aa|down_4|NZ_CP038807.1_667753_669289_-	TIGR02002, PTS_system_glucose-specific_IIABC_component, PTS system, glucose-specific IIBC component	NA|193aa|down_5|NZ_CP038807.1_669536_670115_+	NA	NA|252aa|down_6|NZ_CP038807.1_670218_670974_+	PRK12826, PRK12826, SDR family oxidoreductase	NA|266aa|down_7|NZ_CP038807.1_671111_671909_+	pfam00797, Acetyltransf_2, N-acetyltransferase	NA|90aa|down_8|NZ_CP038807.1_672282_672552_-	NA	NA|107aa|down_9|NZ_CP038807.1_672615_672936_-	NA
GCF_009931395.1_ASM993139v1	NZ_CP038807	Staphylococcus lugdunensis strain APC 3758 chromosome, complete genome	2	1248851-1248930	2	CRISPRCasFinder	no		WYL,csa3,cas3,DEDDh,DinG	Orphan	GCATTTCTTTGTGCTGGGGCCCC	23	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,DEDDh,DinG	NA,NA|151aa|down_0|NZ_CP038807.1_1249829_1250282_+,NA|99aa|down_1|NZ_CP038807.1_1250407_1250704_+,NA|124aa|down_5|NZ_CP038807.1_1252424_1252796_-,NA|67aa|down_6|NZ_CP038807.1_1252809_1253010_+	NA|268aa|up_9|NZ_CP038807.1_1238133_1238937_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|218aa|up_8|NZ_CP038807.1_1239304_1239958_+	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only]	NA|715aa|up_7|NZ_CP038807.1_1240266_1242411_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|120aa|up_6|NZ_CP038807.1_1242554_1242914_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|239aa|up_5|NZ_CP038807.1_1243147_1243864_+	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|156aa|up_4|NZ_CP038807.1_1243863_1244331_+	cd06121, cupin_YML079wp, Saccharomyces cerevisiae YML079wp and related proteins, cupin domain	NA|205aa|up_3|NZ_CP038807.1_1244714_1245329_+	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]	NA|285aa|up_2|NZ_CP038807.1_1245836_1246691_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|406aa|up_1|NZ_CP038807.1_1246776_1247994_+	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters	NA|162aa|up_0|NZ_CP038807.1_1247995_1248481_+	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown]	NA|151aa|down_0|NZ_CP038807.1_1249829_1250282_+	NA	NA|99aa|down_1|NZ_CP038807.1_1250407_1250704_+	NA	NA|181aa|down_2|NZ_CP038807.1_1250817_1251360_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|189aa|down_3|NZ_CP038807.1_1251391_1251958_-	TIGR00730, LOG_family_protein_YJL055W, TIGR00730 family protein	NA|149aa|down_4|NZ_CP038807.1_1251973_1252420_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|124aa|down_5|NZ_CP038807.1_1252424_1252796_-	NA	NA|67aa|down_6|NZ_CP038807.1_1252809_1253010_+	NA	NA|291aa|down_7|NZ_CP038807.1_1253421_1254294_-	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase	NA|147aa|down_8|NZ_CP038807.1_1254675_1255116_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|311aa|down_9|NZ_CP038807.1_1255340_1256273_+	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]
GCF_009931395.1_ASM993139v1	NZ_CP038807	Staphylococcus lugdunensis strain APC 3758 chromosome, complete genome	3	1649545-1649693	1	PILER-CR	no		WYL,csa3,cas3,DEDDh,DinG	Orphan	TGTCGGGGCCCCACCCCAACTTGCTTTGATCGACGAAATACTTTT	45	1	6	1649590-1649618|1649590-1649618|1649590-1649618|1649590-1649618|1649590-1649618|1649590-1649618	NZ_CP038807.1_2052423-2052395|NZ_CP038807.1_646265-646293|NZ_CP038807.1_676904-676876|NZ_CP038807.1_839867-839839|NZ_CP038807.1_1664513-1664541|NZ_CP038807.1_1934863-1934835	NA	2	2	Orphan	WYL,csa3,cas3,DEDDh,DinG	NA|162aa|up_3|NZ_CP038807.1_1642894_1643380_-,NA|130aa|down_7|NZ_CP038807.1_1655829_1656219_-	NA|451aa|up_9|NZ_CP038807.1_1637053_1638406_-	PRK00701, PRK00701, divalent metal cation transporter MntH	NA|204aa|up_8|NZ_CP038807.1_1638667_1639279_-	pfam06335, DUF1054, Protein of unknown function (DUF1054)	NA|272aa|up_7|NZ_CP038807.1_1639461_1640277_+	cd01637, IMPase_like, Inositol-monophosphatase-like domains	NA|66aa|up_6|NZ_CP038807.1_1640449_1640647_-	pfam17259, DUF5325, Family of unknown function (DUF5325)	NA|616aa|up_5|NZ_CP038807.1_1640745_1642593_+	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]	NA|85aa|up_4|NZ_CP038807.1_1642638_1642893_-	pfam09963, DUF2197, Uncharacterized protein conserved in bacteria (DUF2197)	NA|162aa|up_3|NZ_CP038807.1_1642894_1643380_-	NA	NA|93aa|up_2|NZ_CP038807.1_1643523_1643802_+	PRK13666, PRK13666, hypothetical protein; Provisional	NA|413aa|up_1|NZ_CP038807.1_1644102_1645341_+	COG0772, FtsW, Bacterial cell division membrane protein [Cell division and chromosome partitioning]	NA|1149aa|up_0|NZ_CP038807.1_1645947_1649394_+	PRK12999, PRK12999, pyruvate carboxylase; Reviewed	NA|304aa|down_0|NZ_CP038807.1_1650150_1651062_-	COG1612, CtaA, Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]	NA|304aa|down_1|NZ_CP038807.1_1651297_1652209_+	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional	NA|154aa|down_2|NZ_CP038807.1_1652234_1652696_+	COG2322, COG2322, Predicted membrane protein [Function unknown]	NA|352aa|down_3|NZ_CP038807.1_1652882_1653938_+	pfam14504, CAP_assoc_N, CAP-associated N-terminal	NA|145aa|down_4|NZ_CP038807.1_1653954_1654389_+	COG3679, COG3679, Regulatory protein involved in competence development and sporulation [Replication, recombination and repair;    Signal transduction mechanisms]	NA|309aa|down_5|NZ_CP038807.1_1654476_1655403_-	cd08561, GDPD_cytoplasmic_ScUgpQ2_like, Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins	NA|84aa|down_6|NZ_CP038807.1_1655561_1655813_+	COG4471, COG4471, Uncharacterized protein conserved in bacteria [Function unknown]	NA|130aa|down_7|NZ_CP038807.1_1655829_1656219_-	NA	NA|184aa|down_8|NZ_CP038807.1_1656287_1656839_+	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair]	NA|161aa|down_9|NZ_CP038807.1_1656831_1657314_+	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional
GCF_009931395.1_ASM993139v1	NZ_CP038807	Staphylococcus lugdunensis strain APC 3758 chromosome, complete genome	4	1765069-1765155	3	CRISPRCasFinder	no		WYL,csa3,cas3,DEDDh,DinG	Orphan	CACCCCAACTTGCTTTGTTTGTCGAATTTC	30	1	1	1765099-1765125	NZ_CP038807.1_1207763-1207737	NA	1	1	Orphan	WYL,csa3,cas3,DEDDh,DinG	NA,NA	NA|167aa|up_9|NZ_CP038807.1_1752264_1752765_+	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|246aa|up_8|NZ_CP038807.1_1752764_1753502_+	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|117aa|up_7|NZ_CP038807.1_1753607_1753958_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|869aa|up_6|NZ_CP038807.1_1754204_1756811_-	COG4485, COG4485, Predicted membrane protein [Function unknown]	NA|864aa|up_5|NZ_CP038807.1_1756815_1759407_-	pfam09586, YfhO, Bacterial membrane protein YfhO	NA|295aa|up_4|NZ_CP038807.1_1759663_1760548_+	PRK09563, rbgA, GTPase YlqF; Reviewed	NA|256aa|up_3|NZ_CP038807.1_1760531_1761299_+	cd07182, RNase_HII_bacteria_HII_like, Bacterial Ribonuclease HII-like	NA|389aa|up_2|NZ_CP038807.1_1761409_1762576_+	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|303aa|up_1|NZ_CP038807.1_1762597_1763506_+	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|412aa|up_0|NZ_CP038807.1_1763664_1764900_+	pfam02388, FemAB, FemAB family	NA|291aa|down_0|NZ_CP038807.1_1765558_1766431_+	pfam02481, DNA_processg_A, DNA recombination-mediator protein A	NA|690aa|down_1|NZ_CP038807.1_1766602_1768672_+	PRK05582, PRK05582, type I DNA topoisomerase	NA|436aa|down_2|NZ_CP038807.1_1768723_1770031_+	PRK05335, PRK05335, tRNA (uracil-5-)-methyltransferase Gid; Reviewed	NA|298aa|down_3|NZ_CP038807.1_1770162_1771056_+	TIGR02224, Tyrosine_recombinase_XerC, tyrosine recombinase XerC	NA|181aa|down_4|NZ_CP038807.1_1771056_1771599_+	PRK05456, PRK05456, ATP-dependent protease subunit HslV	NA|468aa|down_5|NZ_CP038807.1_1771645_1773049_+	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU	NA|258aa|down_6|NZ_CP038807.1_1773070_1773844_+	PRK04158, PRK04158, GTP-sensing pleiotropic transcriptional regulator CodY	NA|263aa|down_7|NZ_CP038807.1_1774062_1774851_+	PRK05299, rpsB, 30S ribosomal protein S2; Provisional	NA|293aa|down_8|NZ_CP038807.1_1775034_1775913_+	PRK09377, tsf, elongation factor Ts; Provisional	NA|241aa|down_9|NZ_CP038807.1_1776049_1776772_+	PRK00358, pyrH, uridylate kinase; Provisional
GCF_009931395.1_ASM993139v1	NZ_CP038807	Staphylococcus lugdunensis strain APC 3758 chromosome, complete genome	5	2021938-2022020	4	CRISPRCasFinder	no		WYL,csa3,cas3,DEDDh,DinG	Orphan	TTTTGCATTTCTCTTTGTTGGGGCCCC	27	1	7	2021965-2021993|2021965-2021993|2021965-2021993|2021965-2021993|2021965-2021993|2021965-2021993|2021965-2021993	NZ_CP038807.1_1295656-1295684|NZ_CP038807.1_2021908-2021936|NZ_CP038807.1_676807-676779|NZ_CP038807.1_676864-676836|NZ_CP038807.1_839826-839798|NZ_CP038807.1_2239337-2239365|NZ_CP038807.1_2400792-2400764	NA	1	1	Orphan	WYL,csa3,cas3,DEDDh,DinG	NA,NA|32aa|down_8|NZ_CP038807.1_2033526_2033622_+	NA|583aa|up_9|NZ_CP038807.1_2013382_2015131_-	NF033092, HK_WalK, cell wall metabolism sensor histidine kinase WalK	NA|242aa|up_8|NZ_CP038807.1_2015114_2015840_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|246aa|up_7|NZ_CP038807.1_2015990_2016728_-	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|178aa|up_6|NZ_CP038807.1_2016730_2017264_-	COG1386, scpB, Chromosome segregation and condensation protein B [DNA replication, recombination and repair]	NA|244aa|up_5|NZ_CP038807.1_2017256_2017988_-	PRK00104, scpA, segregation and condensation protein A; Reviewed	NA|172aa|up_4|NZ_CP038807.1_2018081_2018597_+	COG1547, COG1547, Predicted metal-dependent hydrolase [General function prediction only]	NA|296aa|up_3|NZ_CP038807.1_2018609_2019497_-	COG4974, XerD, Site-specific recombinase XerD [DNA replication, recombination, and repair]	NA|155aa|up_2|NZ_CP038807.1_2019535_2020000_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|181aa|up_1|NZ_CP038807.1_2020108_2020651_-	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate	NA|303aa|up_0|NZ_CP038807.1_2020734_2021643_+	cd19086, AKR_AKR11C1, AKR11C family of aldo-keto reductase (AKR)	NA|252aa|down_0|NZ_CP038807.1_2022245_2023001_-	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only]	NA|271aa|down_1|NZ_CP038807.1_2023088_2023901_+	COG0345, ProC, Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]	NA|308aa|down_2|NZ_CP038807.1_2023988_2024912_-	TIGR02651, Ribonuclease_Z, ribonuclease Z	NA|495aa|down_3|NZ_CP038807.1_2025066_2026551_+	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|294aa|down_4|NZ_CP038807.1_2026692_2027574_+	pfam14526, Cass2, Integron-associated effector binding protein	NA|549aa|down_5|NZ_CP038807.1_2027838_2029485_-	cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase catalytic domain found in Sucrose isomerases, oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), dextran glucosidase (also called glucan 1,6-alpha-glucosidase), and related proteins	NA|335aa|down_6|NZ_CP038807.1_2029496_2030501_-	cd06294, PBP1_MalR-like, ligand-binding domain of maltose transcription regulator MalR which is a member of the LacI-GalR family repressors	NA|375aa|down_7|NZ_CP038807.1_2032246_2033371_-	cd05683, M20_peptT_like, M20 Peptidase T like enzymes specifically cleave tripeptides	NA|32aa|down_8|NZ_CP038807.1_2033526_2033622_+	NA	NA|161aa|down_9|NZ_CP038807.1_2033808_2034291_+	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_009931395.1_ASM993139v1	NZ_CP038807	Staphylococcus lugdunensis strain APC 3758 chromosome, complete genome	6	2194873-2194963	5	CRISPRCasFinder	no		WYL,csa3,cas3,DEDDh,DinG	Orphan	GCACTTAACGAGCATGGCGAGTTT	24	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,DEDDh,DinG	NA,NA	NA|176aa|up_9|NZ_CP038807.1_2180277_2180805_-	PRK00028, infC, translation initiation factor IF-3; Reviewed	NA|498aa|up_8|NZ_CP038807.1_2181016_2182510_-	COG0833, LysP, Amino acid transporters [Amino acid transport and metabolism]	NA|646aa|up_7|NZ_CP038807.1_2182973_2184911_-	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed	NA|307aa|up_6|NZ_CP038807.1_2185270_2186191_-	PRK08939, PRK08939, primosomal protein DnaI; Reviewed	NA|459aa|up_5|NZ_CP038807.1_2186190_2187567_-	COG3611, DnaB, Replication initiation/membrane attachment protein [DNA replication, recombination, and repair]	NA|157aa|up_4|NZ_CP038807.1_2187567_2188038_-	PRK00464, nrdR, transcriptional repressor NrdR	NA|336aa|up_3|NZ_CP038807.1_2188354_2189362_-	PRK06256, PRK06256, biotin synthase; Validated	NA|334aa|up_2|NZ_CP038807.1_2189534_2190536_-	PRK07729, PRK07729, glyceraldehyde-3-phosphate dehydrogenase; Validated	NA|291aa|up_1|NZ_CP038807.1_2191302_2192175_-	COG0266, Nei, Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]	NA|878aa|up_0|NZ_CP038807.1_2192191_2194825_-	PRK05755, PRK05755, DNA polymerase I; Provisional	NA|570aa|down_0|NZ_CP038807.1_2195144_2196854_-	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR	NA|237aa|down_1|NZ_CP038807.1_2196853_2197564_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|423aa|down_2|NZ_CP038807.1_2197767_2199036_-	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed	NA|373aa|down_3|NZ_CP038807.1_2199083_2200202_-	PRK14035, PRK14035, citrate synthase; Provisional	NA|453aa|down_4|NZ_CP038807.1_2200543_2201902_+	PRK11049, PRK11049, D-alanine/D-serine/glycine permease; Provisional	NA|161aa|down_5|NZ_CP038807.1_2202409_2202892_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|587aa|down_6|NZ_CP038807.1_2203193_2204954_-	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|323aa|down_7|NZ_CP038807.1_2204971_2205940_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|315aa|down_8|NZ_CP038807.1_2206102_2207047_-	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|286aa|down_9|NZ_CP038807.1_2207048_2207906_-	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta
GCF_009931395.1_ASM993139v1	NZ_CP038807	Staphylococcus lugdunensis strain APC 3758 chromosome, complete genome	7	2431261-2431349	6	CRISPRCasFinder	no		WYL,csa3,cas3,DEDDh,DinG	Orphan	GTTTTTGACTGACTTCTCAATCA	23	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,DEDDh,DinG	NA|115aa|up_9|NZ_CP038807.1_2425375_2425720_-,NA|70aa|up_3|NZ_CP038807.1_2430357_2430567_-,NA|49aa|up_2|NZ_CP038807.1_2430559_2430706_-,NA	NA|115aa|up_9|NZ_CP038807.1_2425375_2425720_-	NA	NA|214aa|up_8|NZ_CP038807.1_2426007_2426649_-	pfam16560, SAPI, Putative mobile pathogenicity island	NA|122aa|up_7|NZ_CP038807.1_2426662_2427028_-	cd03313, enolase, Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways	NA|570aa|up_6|NZ_CP038807.1_2427375_2429085_-	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair]	NA|290aa|up_5|NZ_CP038807.1_2429098_2429968_-	smart00942, PriCT_1, Primase C terminal 1 (PriCT-1)	NA|108aa|up_4|NZ_CP038807.1_2430031_2430355_-	pfam07342, DUF1474, Protein of unknown function (DUF1474)	NA|70aa|up_3|NZ_CP038807.1_2430357_2430567_-	NA	NA|49aa|up_2|NZ_CP038807.1_2430559_2430706_-	NA	NA|106aa|up_1|NZ_CP038807.1_2430702_2431020_-	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|73aa|up_0|NZ_CP038807.1_2431024_2431243_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|225aa|down_0|NZ_CP038807.1_2431415_2432090_+	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|391aa|down_1|NZ_CP038807.1_2432103_2433276_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|95aa|down_2|NZ_CP038807.1_2435024_2435309_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|247aa|down_3|NZ_CP038807.1_2435489_2436230_+	pfam02517, Abi, CAAX protease self-immunity	NA|503aa|down_4|NZ_CP038807.1_2436648_2438157_-	pfam05297, Herpes_LMP1, Herpesvirus latent membrane protein 1 (LMP1)	NA|208aa|down_5|NZ_CP038807.1_2438350_2438974_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|262aa|down_6|NZ_CP038807.1_2439108_2439894_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|216aa|down_7|NZ_CP038807.1_2440440_2441088_+	smart00793, AgrB, Accessory gene regulator B	NA|48aa|down_8|NZ_CP038807.1_2441090_2441234_+	smart00794, AgrD, Staphylococcal AgrD protein	NA|430aa|down_9|NZ_CP038807.1_2441254_2442544_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
