assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009931635.1_ASM993163v1	NZ_CP048001	Bifidobacterium longum strain CACC 517 chromosome, complete genome	1	1665730-1665810	1	CRISPRCasFinder	no		casR,cas3,WYL,DEDDh,cas2,cas1,cas9	Orphan	CGCACAGTGAAACCGTCTCATAT	23	0	0	NA	NA	NA	1	1	Orphan	casR,cas3,WYL,DEDDh,cas2,cas1,cas9	NA|107aa|up_5|NZ_CP048001.1_1656098_1656419_-,NA|284aa|down_0|NZ_CP048001.1_1666710_1667562_+	NA|170aa|up_9|NZ_CP048001.1_1651975_1652485_+	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins	NA|353aa|up_8|NZ_CP048001.1_1652524_1653583_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|319aa|up_7|NZ_CP048001.1_1653807_1654764_+	cd09022, Aldose_epim_Ec_YihR, Aldose 1-epimerase, similar to Escherichia coli YihR	NA|315aa|up_6|NZ_CP048001.1_1654888_1655833_+	cd09022, Aldose_epim_Ec_YihR, Aldose 1-epimerase, similar to Escherichia coli YihR	NA|107aa|up_5|NZ_CP048001.1_1656098_1656419_-	NA	NA|263aa|up_4|NZ_CP048001.1_1656418_1657207_-	PRK09652, PRK09652, RNA polymerase sigma factor RpoE; Provisional	NA|518aa|up_3|NZ_CP048001.1_1657345_1658899_+	PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional	NA|332aa|up_2|NZ_CP048001.1_1659020_1660016_+	pfam13480, Acetyltransf_6, Acetyltransferase (GNAT) domain	NA|1226aa|up_1|NZ_CP048001.1_1660134_1663812_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|528aa|up_0|NZ_CP048001.1_1663872_1665456_-	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism]	NA|284aa|down_0|NZ_CP048001.1_1666710_1667562_+	NA	NA|532aa|down_1|NZ_CP048001.1_1667865_1669461_+	cd01087, Prolidase, Prolidase	NA|174aa|down_2|NZ_CP048001.1_1669509_1670031_+	cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|570aa|down_3|NZ_CP048001.1_1670080_1671790_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|390aa|down_4|NZ_CP048001.1_1671793_1672963_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|364aa|down_5|NZ_CP048001.1_1672964_1674056_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|545aa|down_6|NZ_CP048001.1_1674222_1675857_-	cd08519, PBP2_NikA_DppA_OppA_like_20, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|428aa|down_7|NZ_CP048001.1_1676136_1677420_-	cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate	NA|271aa|down_8|NZ_CP048001.1_1677475_1678288_-	PRK00443, nagB, glucosamine-6-phosphate deaminase; Provisional	NA|375aa|down_9|NZ_CP048001.1_1678625_1679750_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
GCF_009931635.1_ASM993163v1	NZ_CP048001	Bifidobacterium longum strain CACC 517 chromosome, complete genome	2	2008099-2010445	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	WYL,cas2,cas1,cas9	casR,cas3,WYL,DEDDh,cas2,cas1,cas9	Type II-C,,Type II-B,Type II-A	GCTGGGAATTAGCATTCACCCTTCTTGATAAGCTTG,GCTGGGAATTAGCATTCACCCTTCTTGATAAGCTTG,GCTGGGAATTAGCATTCACCCTTCTTGATAAGCTTG	36,36,36	0	0	NA	NA	NA:NA:NA	36,36,28	36	,TypeII-C,TypeII-B,TypeII-A	casR,cas3,WYL,DEDDh,cas2,cas1,cas9	NA|97aa|up_0|NZ_CP048001.1_2007787_2008078_-,NA	NA|1395aa|up_9|NZ_CP048001.1_1992103_1996288_-	COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	WYL|362aa|up_8|NZ_CP048001.1_1996365_1997451_+	pfam13280, WYL, WYL domain	NA|340aa|up_7|NZ_CP048001.1_1997684_1998704_+	TIGR03535, DapD_actino, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA|431aa|up_6|NZ_CP048001.1_1998917_2000210_-	cd06114, EcCS_like, Escherichia coli (Ec) citrate synthase (CS) GltA_like	NA|261aa|up_5|NZ_CP048001.1_2000483_2001266_-	cd01086, MetAP1, Methionine Aminopeptidase 1	NA|330aa|up_4|NZ_CP048001.1_2001455_2002445_-	COG3247, HdeD, Uncharacterized conserved protein [Function unknown]	NA|725aa|up_3|NZ_CP048001.1_2002621_2004796_+	COG3590, PepO, Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]	NA|246aa|up_2|NZ_CP048001.1_2004878_2005616_-	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB)	NA|605aa|up_1|NZ_CP048001.1_2005891_2007706_-	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional	NA|97aa|up_0|NZ_CP048001.1_2007787_2008078_-	NA	cas2|111aa|down_0|NZ_CP048001.1_2010495_2010828_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|302aa|down_1|NZ_CP048001.1_2010824_2011730_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1139aa|down_2|NZ_CP048001.1_2011733_2015150_-	pfam18470, Cas9_a, Cas9 alpha-helical lobe domain	NA|473aa|down_3|NZ_CP048001.1_2015383_2016802_-	cd18037, DEXSc_Pif1_like, DEAD-box helicase domain of Pif1	NA|217aa|down_4|NZ_CP048001.1_2016850_2017501_-	PRK05359, PRK05359, oligoribonuclease; Provisional	NA|518aa|down_5|NZ_CP048001.1_2017668_2019222_-	pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain	NA|428aa|down_6|NZ_CP048001.1_2019274_2020558_-	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|225aa|down_7|NZ_CP048001.1_2020554_2021229_-	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]	NA|226aa|down_8|NZ_CP048001.1_2021403_2022081_+	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|235aa|down_9|NZ_CP048001.1_2022212_2022917_-	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
GCF_009931635.1_ASM993163v1	NZ_CP048001	Bifidobacterium longum strain CACC 517 chromosome, complete genome	3	2147340-2147425	3	CRISPRCasFinder	no		casR,cas3,WYL,DEDDh,cas2,cas1,cas9	Orphan	GGCCCTGAGCGTGCGGGCGCGGA	23	0	0	NA	NA	NA	1	1	Orphan	casR,cas3,WYL,DEDDh,cas2,cas1,cas9	NA|30aa|up_5|NZ_CP048001.1_2139428_2139518_-,NA|211aa|up_4|NZ_CP048001.1_2139709_2140342_-,NA|243aa|down_1|NZ_CP048001.1_2149505_2150234_+	NA|517aa|up_9|NZ_CP048001.1_2133908_2135459_+	cd17359, MFS_XylE_like, D-xylose-proton symporter and similar transporters of the Major Facilitator Superfamily	NA|559aa|up_8|NZ_CP048001.1_2135546_2137223_+	cd05801, PGM_like3, This bacterial PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily	NA|297aa|up_7|NZ_CP048001.1_2137556_2138447_+	cd09278, RNase_HI_prokaryote_like, RNase HI family found mainly in prokaryotes	NA|233aa|up_6|NZ_CP048001.1_2138577_2139276_+	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	NA|30aa|up_5|NZ_CP048001.1_2139428_2139518_-	NA	NA|211aa|up_4|NZ_CP048001.1_2139709_2140342_-	NA	NA|513aa|up_3|NZ_CP048001.1_2140469_2142008_+	PRK11823, PRK11823, DNA repair protein RadA; Provisional	NA|375aa|up_2|NZ_CP048001.1_2142022_2143147_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase	NA|388aa|up_1|NZ_CP048001.1_2143244_2144408_-	PRK03287, truB, tRNA pseudouridine synthase B; Provisional	NA|158aa|up_0|NZ_CP048001.1_2144409_2144883_-	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|356aa|down_0|NZ_CP048001.1_2148230_2149298_-	PRK12327, nusA, transcription elongation factor NusA; Provisional	NA|243aa|down_1|NZ_CP048001.1_2149505_2150234_+	NA	NA|348aa|down_2|NZ_CP048001.1_2150274_2151318_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|523aa|down_3|NZ_CP048001.1_2151850_2153419_-	COG3534, AbfA, Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]	NA|267aa|down_4|NZ_CP048001.1_2154228_2155029_-	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism]	NA|727aa|down_5|NZ_CP048001.1_2155235_2157416_-	pfam14403, CP_ATPgrasp_2, Circularly permuted ATP-grasp type 2	NA|304aa|down_6|NZ_CP048001.1_2157691_2158603_+	cd02570, PseudoU_synth_EcTruA, Eukaryotic and bacterial pseudouridine synthases similar to E	NA|181aa|down_7|NZ_CP048001.1_2158684_2159227_-	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|332aa|down_8|NZ_CP048001.1_2159326_2160322_-	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|133aa|down_9|NZ_CP048001.1_2160402_2160801_-	PRK05309, PRK05309, 30S ribosomal protein S11; Validated
