The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_AP022332	Methylosinus sp. C49 isolate Methylosinus sp. C49	3918175	1414863	1430687	3918175	head,portal,capsid,protease,tail	Paracoccus_phage(27.27%)	21	NA	NA
WP_161912888.1|1414863_1416081_+|portal	phage portal protein	portal	W8ECU7	Geobacillus_phage	38.6	4.5e-69
WP_161914922.1|1416226_1416631_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161912889.1|1416650_1416935_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024878868.1|1417036_1417222_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157198924.1|1417222_1417396_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161912890.1|1417395_1418013_+|head,protease	HK97 family phage prohead protease	head,protease	A0A0U2BX10	Paracoccus_phage	39.6	1.8e-18
WP_161912891.1|1418137_1419367_+|capsid	phage major capsid protein	capsid	M1FPN2	Enterobacteria_phage	41.4	3.2e-75
WP_161912892.1|1419453_1420035_+|head,tail	phage head-tail connector protein	head,tail	NA	NA	NA	NA
WP_161912893.1|1420031_1420358_+|head	phage head closure protein	head	NA	NA	NA	NA
WP_161912894.1|1420368_1420779_+	DUF3168 domain-containing protein	NA	NA	NA	NA	NA
WP_161912895.1|1420803_1421214_+|tail	phage major tail protein, TP901-1 family	tail	NA	NA	NA	NA
WP_161912896.1|1421224_1421575_+	gene transfer agent family protein	NA	NA	NA	NA	NA
WP_161914923.1|1421604_1421775_+|tail	phage tail assembly chaperone	tail	NA	NA	NA	NA
WP_161912897.1|1421771_1422359_+|tail	phage tail tape measure protein	tail	G9JXH3	Shigella_phage	60.7	9.5e-09
WP_161912898.1|1422369_1423008_+	TIGR02217 family protein	NA	A0A0B5A2K3	Paracoccus_phage	46.0	2.0e-44
WP_161912899.1|1423023_1423914_+	DUF2163 domain-containing protein	NA	A0A0K0PVK1	Roseobacter_phage	42.2	1.4e-59
WP_161912900.1|1423910_1424348_+	C40 family peptidase	NA	A0A1V0DYB6	Dinoroseobacter_phage	44.8	1.9e-25
WP_161912901.1|1424363_1428230_+	glycoside hydrolase TIM-barrel-like domain-containing protein	NA	A0A0B5A7K5	Paracoccus_phage	40.4	8.5e-223
WP_161912902.1|1428236_1429646_+	DUF2793 domain-containing protein	NA	A0A0K1LM04	Rhodobacter_phage	38.7	5.6e-31
WP_161912903.1|1429662_1430187_+	DUF4376 domain-containing protein	NA	A0A1S5R1J2	Pseudomonas_phage	41.8	1.0e-14
WP_161912904.1|1430228_1430687_+	M15 family metallopeptidase	NA	A0A2P0PAE7	Pectobacterium_phage	51.1	3.1e-31
>prophage 2
NZ_AP022332	Methylosinus sp. C49 isolate Methylosinus sp. C49	3918175	2577827	2586243	3918175	tRNA	Pseudomonas_phage(33.33%)	7	NA	NA
WP_174242403.1|2577827_2579648_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	27.9	1.9e-47
WP_161913818.1|2579958_2580948_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	53.6	6.5e-18
WP_161913819.1|2581035_2582289_+	serine hydrolase	NA	B6DZZ7	Stx2-converting_phage	34.6	4.0e-49
WP_161913820.1|2582285_2583005_+	dTMP kinase	NA	Q2Z0N0	Pseudomonas_phage	38.2	3.5e-29
WP_161913821.1|2583001_2584075_+	DNA polymerase III subunit delta'	NA	S5WKH4	Pseudomonas_phage	30.4	1.2e-14
WP_174242404.1|2584084_2584600_+	DNA-deoxyinosine glycosylase	NA	NA	NA	NA	NA
WP_161915000.1|2584689_2586243_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	39.8	5.5e-96
>prophage 3
NZ_AP022332	Methylosinus sp. C49 isolate Methylosinus sp. C49	3918175	2683766	2693059	3918175	tRNA	uncultured_Mediterranean_phage(87.5%)	10	NA	NA
WP_161913891.1|2683766_2685308_-	peptidoglycan DD-metalloendopeptidase family protein	NA	Q8SBN9	Clostridium_phage	42.7	1.6e-15
WP_161913892.1|2685479_2686166_-	methyltransferase domain-containing protein	NA	A0A1B1IU40	uncultured_Mediterranean_phage	39.0	7.2e-16
WP_161913893.1|2686173_2686938_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	38.9	9.7e-38
WP_161913894.1|2687142_2688462_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	49.9	1.8e-108
WP_161913895.1|2688663_2689446_-	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	44.1	1.0e-50
WP_161913896.1|2689442_2689916_-	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
WP_161913897.1|2689961_2690210_-	twin-arginine translocase TatA/TatE family subunit	NA	NA	NA	NA	NA
WP_161913898.1|2690379_2691120_-	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	47.1	2.2e-42
WP_161913899.1|2691158_2691992_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	36.7	2.1e-33
WP_161913900.1|2692051_2693059_-	beta-N-acetylhexosaminidase	NA	A0A1B1IVS3	uncultured_Mediterranean_phage	45.0	5.8e-22
>prophage 1
NZ_AP022334	Methylosinus sp. C49 isolate Methylosinus sp. C49 plasmid pMSC49b, complete sequence	263145	111055	220148	263145	transposase	Escherichia_phage(22.22%)	78	NA	NA
WP_161915356.1|111055_116104_-	DEAD/DEAH box helicase family protein	NA	I6NW45	Burkholderia_virus	41.6	0.0e+00
WP_161915357.1|116205_116532_-	hypothetical protein	NA	A0A160DEI6	Gordonia_phage	37.3	6.4e-07
WP_161915358.1|116749_117184_-	hypothetical protein	NA	NA	NA	NA	NA
WP_161915359.1|117249_118311_-	phosphoadenosine phosphosulfate reductase family protein	NA	H7BVI4	unidentified_phage	35.2	1.6e-17
WP_161915360.1|118307_119285_-	DUF1738 domain-containing protein	NA	A0A1B1IWW8	uncultured_Mediterranean_phage	33.0	1.7e-34
WP_161915361.1|119640_120126_+	MucR family transcriptional regulator	NA	A0A1P8VVG0	Erythrobacter_phage	45.4	7.3e-23
WP_161915362.1|120817_121855_+|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	25.9	6.4e-08
WP_161915449.1|122169_122514_+	WGR domain-containing protein	NA	NA	NA	NA	NA
WP_161915363.1|123718_124309_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161915364.1|124378_125560_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_161915365.1|125570_126236_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	41.6	2.5e-34
WP_161915366.1|126297_127722_+	TolC family protein	NA	NA	NA	NA	NA
WP_161915367.1|127732_129061_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_161915368.1|129202_129676_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_161915369.1|129675_129915_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_161915370.1|129866_130916_+	cytochrome P450	NA	NA	NA	NA	NA
WP_161915371.1|130924_131098_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161915372.1|131174_131519_-	hypothetical protein	NA	NA	NA	NA	NA
WP_161915373.1|131914_132214_-	hypothetical protein	NA	NA	NA	NA	NA
WP_161915374.1|132344_132698_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161915375.1|132727_133351_-	hypothetical protein	NA	NA	NA	NA	NA
WP_161915376.1|134679_135537_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_161915377.1|135684_135924_-	hypothetical protein	NA	NA	NA	NA	NA
WP_161915378.1|135920_136517_-	hypothetical protein	NA	D5GVU5	Campylobacter_virus	32.4	2.1e-19
WP_161915379.1|136525_136858_-	hypothetical protein	NA	NA	NA	NA	NA
WP_161915450.1|136897_138376_-	hypothetical protein	NA	M4QT32	Loktanella_phage	41.4	7.9e-20
WP_161915451.1|138567_140649_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	31.6	2.3e-81
WP_161915380.1|141591_142533_-	DUF3991 domain-containing protein	NA	NA	NA	NA	NA
WP_161915381.1|142790_143147_+	WGR domain-containing protein	NA	NA	NA	NA	NA
WP_161915382.1|143136_145323_+	ATP-dependent RecD-like DNA helicase	NA	A0A0H3UZA5	Geobacillus_virus	28.3	3.1e-60
WP_161915383.1|145410_145671_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161915384.1|148875_149370_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161915385.1|149366_149825_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_161915386.1|149825_150889_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_161915387.1|150984_151380_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_161915388.1|153806_154136_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_161915389.1|155015_155576_+|transposase	ISAs1 family transposase	transposase	NA	NA	NA	NA
WP_161915390.1|155560_156133_+|transposase	ISAs1 family transposase	transposase	NA	NA	NA	NA
WP_161915391.1|156310_157999_-	FkbM family methyltransferase	NA	A0A1V0SAF0	Catovirus	27.5	5.0e-10
WP_161915392.1|158056_160921_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_161915393.1|160917_161928_-	hypothetical protein	NA	NA	NA	NA	NA
WP_161915452.1|163655_163940_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_161915394.1|164327_165380_+	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	50.9	7.7e-94
WP_161915395.1|165398_165956_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	42.9	3.6e-34
WP_161915453.1|165958_166855_+	dTDP-4-dehydrorhamnose reductase	NA	A0A1D7XFA3	Escherichia_phage	36.3	1.7e-33
WP_161915396.1|166856_167723_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	A0A291LA53	Escherichia_phage	58.6	8.9e-96
WP_161915397.1|168056_169421_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161915398.1|170822_171905_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_161915399.1|171918_173028_+	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	43.5	1.1e-50
WP_161915400.1|174602_175685_+	Hint domain-containing protein	NA	NA	NA	NA	NA
WP_161915401.1|175775_176210_-	hypothetical protein	NA	NA	NA	NA	NA
WP_161915402.1|176365_176758_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_161915403.1|176761_177109_+	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZBY2	Stx2-converting_phage	51.4	1.2e-27
WP_161915404.1|177179_178799_+|transposase	IS66 family transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	42.7	5.7e-104
WP_161915405.1|179906_181172_+|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	35.7	7.5e-43
WP_161915406.1|182821_183610_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_161915407.1|183627_184275_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161915408.1|184271_185411_+	DUF563 domain-containing protein	NA	NA	NA	NA	NA
WP_161915454.1|185584_185842_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_161915409.1|186410_187100_+	HEAT repeat domain-containing protein	NA	NA	NA	NA	NA
WP_161915410.1|187188_187917_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	38.0	2.8e-34
WP_161915411.1|189010_190519_+|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_161915412.1|190515_191325_+	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	37.3	3.0e-37
WP_161915455.1|192305_193508_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_161915413.1|194725_195727_-	FkbM family methyltransferase	NA	A0A0A0V284	uncultured_virus	30.6	4.4e-06
WP_161915414.1|196005_196593_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_161915415.1|198243_199307_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_161915456.1|199857_200286_+	adenylyl-sulfate kinase	NA	A0A1B0XTK9	Freshwater_phage	46.9	2.1e-26
WP_161915416.1|204233_206447_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_161915417.1|206483_207209_-	acetyltransferase	NA	NA	NA	NA	NA
WP_161915418.1|207550_208540_-	GDP-mannose 4,6-dehydratase	NA	M1HVB5	Paramecium_bursaria_Chlorella_virus	51.3	3.6e-93
WP_161915419.1|211722_212364_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161915457.1|212894_216548_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_161915420.1|216599_216725_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161915458.1|217195_217429_-	hypothetical protein	NA	NA	NA	NA	NA
WP_159732895.1|217733_218054_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_161915421.1|218050_218404_+	IS66 family insertion sequence element accessory protein TnpB	NA	S5VXZ8	Leptospira_phage	30.9	2.0e-09
WP_161915422.1|219476_220148_-|transposase	IS6 family transposase	transposase	A0A077SL39	Escherichia_phage	50.5	3.3e-50
>prophage 1
NZ_AP022335	Methylosinus sp. C49 isolate Methylosinus sp. C49 plasmid pMSC49c, complete sequence	178244	49634	100557	178244	integrase,transposase	uncultured_Caudovirales_phage(28.57%)	44	78410:78427	100416:100433
WP_161915495.1|49634_50663_-|transposase	IS110 family transposase	transposase	A0A1S7J231	Thermus_phage	25.8	8.5e-13
WP_161915200.1|51449_51710_-	toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA	NA
WP_161915199.1|51706_52132_-	putative toxin-antitoxin system toxin component, PIN family	NA	NA	NA	NA	NA
WP_161915496.1|52456_53572_+	DUF1612 domain-containing protein	NA	NA	NA	NA	NA
WP_161915497.1|53816_55607_+	ATP-binding cassette domain-containing protein	NA	NA	NA	NA	NA
WP_161915498.1|55655_57134_+	glucan 1,4-alpha-glucosidase	NA	NA	NA	NA	NA
WP_161915499.1|57170_60557_-	hypothetical protein	NA	NA	NA	NA	NA
WP_161915500.1|60755_63629_+	discoidin domain-containing protein	NA	NA	NA	NA	NA
WP_161915501.1|63644_66026_-	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	36.1	1.1e-164
WP_161915584.1|66138_66813_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_161915502.1|66821_67472_-	nitroreductase family protein	NA	NA	NA	NA	NA
WP_161915503.1|67865_68588_+	SIMPL domain-containing protein	NA	NA	NA	NA	NA
WP_161915585.1|68637_70098_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_161915504.1|70094_70541_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_161915505.1|70537_70822_+	AtpZ/AtpI family protein	NA	NA	NA	NA	NA
WP_161915506.1|70818_71100_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161915507.1|71096_71777_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003611173.1|71793_72039_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_161915508.1|72052_72799_+	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_161915509.1|72788_74312_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_161915510.1|74308_75190_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_161915586.1|75186_75582_-|transposase	Tn3 family transposase	transposase	NA	NA	NA	NA
WP_161915511.1|75988_76261_+	alpha/beta hydrolase fold domain-containing protein	NA	NA	NA	NA	NA
WP_161915512.1|76157_76424_+	alpha/beta hydrolase fold domain-containing protein	NA	NA	NA	NA	NA
78410:78427	attL	GCTCAATGGCGTCGATCC	NA	NA	NA	NA
WP_161915587.1|78629_79247_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_161915513.1|79765_81787_+	EAL domain-containing protein	NA	G3MA91	Bacillus_virus	34.4	8.3e-20
WP_161915514.1|82031_82268_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_161915515.1|82498_82717_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161915516.1|82743_82986_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_161915517.1|82985_83402_+	PIN domain-containing protein	NA	NA	NA	NA	NA
WP_161915518.1|83398_84532_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_161915519.1|85717_86020_+	STAS domain-containing protein	NA	NA	NA	NA	NA
WP_161915520.1|86139_86505_+	response regulator	NA	NA	NA	NA	NA
WP_161915521.1|86564_88544_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_161915588.1|88543_88993_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_161915522.1|89027_91124_+	MCP four helix bundle domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	64.0	1.7e-07
WP_161915523.1|91208_93425_+	MCP four helix bundle domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	64.7	6.1e-08
WP_161915524.1|93512_93998_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_161915525.1|94004_94910_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_161915526.1|94906_95986_+	chemotaxis-specific protein-glutamate methyltransferase CheB	NA	NA	NA	NA	NA
WP_161915527.1|96015_97743_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161914412.1|98150_98591_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_161914411.1|98587_98944_+	IS66 family insertion sequence element accessory protein TnpB	NA	S5VXZ8	Leptospira_phage	33.6	2.3e-10
WP_161915093.1|98994_100557_+|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	37.0	1.7e-76
100416:100433	attR	GCTCAATGGCGTCGATCC	NA	NA	NA	NA
>prophage 1
NZ_AP022336	Methylosinus sp. C49 isolate Methylosinus sp. C49 plasmid pMSC49d, complete sequence	22482	472	9507	22482		Brucella_phage(33.33%)	11	NA	NA
WP_161915615.1|472_3187_-	Ti-type conjugative transfer relaxase TraA	NA	A0A0K2FLP8	Brevibacillus_phage	25.8	5.0e-12
WP_161915600.1|3470_3791_+	mobilization protein	NA	NA	NA	NA	NA
WP_161915601.1|3882_4149_+	hypothetical protein	NA	NA	NA	NA	NA
WP_162561596.1|4222_4426_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161915602.1|4771_5275_-	hypothetical protein	NA	NA	NA	NA	NA
WP_161915603.1|5443_5701_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161915604.1|5816_6587_-	hypothetical protein	NA	A0A0A8IK91	Aurantimonas_phage	42.4	1.5e-22
WP_142863164.1|7550_8192_-	AAA family ATPase	NA	A0A0K1Y6H3	Rhodobacter_phage	39.6	7.4e-31
WP_142863163.1|8351_8645_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A141GEX6	Brucella_phage	51.0	8.3e-22
WP_142863162.1|8644_8947_+	putative addiction module antidote protein	NA	A0A141GEX5	Brucella_phage	48.9	2.0e-15
WP_161915605.1|8955_9507_-	recombinase family protein	NA	A0JC18	Ralstonia_phage	43.6	6.2e-26
