The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_AP022324	Pseudomonas putida strain TS312	5681150	780812	848263	5681150	holin,protease,integrase	Bacillus_phage(28.57%)	58	777033:777052	856276:856295
777033:777052	attL	TGTGCCGGCCCTTTCGCGGG	NA	NA	NA	NA
WP_174244687.1|780812_782774_+|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	27.0	1.2e-20
WP_025754082.1|782845_783679_-	taurine dioxygenase	NA	NA	NA	NA	NA
WP_016714450.1|783727_784567_-	taurine ABC transporter permease TauC	NA	NA	NA	NA	NA
WP_019096905.1|784563_785352_-	taurine ABC transporter ATP-binding subunit	NA	G3M9Y6	Bacillus_virus	35.4	7.7e-30
WP_016714452.1|785365_786337_-	taurine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_016714453.1|786835_788167_+	OprD family porin	NA	NA	NA	NA	NA
WP_019096904.1|788332_788971_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_019096903.1|789168_789762_+	NADPH-dependent FMN reductase	NA	NA	NA	NA	NA
WP_019096902.1|789846_790812_+	sulfonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019096901.1|790871_792020_+	FMNH2-dependent alkanesulfonate monooxygenase	NA	NA	NA	NA	NA
WP_016714458.1|792030_792828_+	aliphatic sulfonate ABC transporter permease SsuC	NA	NA	NA	NA	NA
WP_019096900.1|792824_793637_+	aliphatic sulfonates ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.6	4.8e-27
WP_003255829.1|793677_793893_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_025754078.1|793972_794605_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_026020326.1|794604_796182_-	glutamate--cysteine ligase	NA	NA	NA	NA	NA
WP_019096897.1|796335_796719_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_019096896.1|796718_799043_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_016484407.1|799260_800001_+	two-component system response regulator OmpR	NA	W8CYM9	Bacillus_phage	36.3	7.7e-32
WP_016714463.1|800014_801328_+	HAMP domain-containing protein	NA	W8CYF6	Bacillus_phage	25.3	9.6e-09
WP_012316721.1|801358_802264_-	30S ribosomal protein S6--L-glutamate ligase	NA	A0A1D7SR78	Cyanophage	33.3	3.0e-38
WP_174244688.1|802260_802710_-|protease	ATP-dependent zinc protease	protease	NA	NA	NA	NA
WP_016714465.1|802852_803254_+	RNA-binding protein S4	NA	NA	NA	NA	NA
WP_084297256.1|803281_804076_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_019096894.1|804196_805096_+	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA	NA
WP_019096893.1|805275_806817_+	phosphoenolpyruvate carboxykinase	NA	A0A2H4PQN1	Staphylococcus_phage	46.5	7.3e-125
WP_019096892.1|806964_807405_+	thioesterase family protein	NA	NA	NA	NA	NA
WP_019096891.1|807461_807944_-	hypothetical protein	NA	NA	NA	NA	NA
WP_161989602.1|808140_810486_-	FdhF/YdeP family oxidoreductase	NA	NA	NA	NA	NA
WP_016714470.1|810491_811322_-	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA	NA
WP_019096889.1|811499_811940_+	peptidoglycan-binding protein LysM	NA	G3MBQ1	Bacillus_virus	51.9	4.3e-06
WP_161989603.1|811990_812653_-	GMP/IMP nucleotidase	NA	NA	NA	NA	NA
WP_016714473.1|812717_813284_+	ADP compounds hydrolase NudE	NA	NA	NA	NA	NA
WP_019096887.1|813280_814099_+	3'(2'),5'-bisphosphate nucleotidase CysQ	NA	NA	NA	NA	NA
WP_019096886.1|814211_814667_-	YiiD C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_016714476.1|814666_816073_-	sigma-54-dependent Fis family transcriptional regulator	NA	W8CYM9	Bacillus_phage	28.7	6.6e-08
WP_025754073.1|816069_817884_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_161989604.1|817926_818472_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	53.9	3.5e-50
WP_019096883.1|818750_819857_+	agmatine deiminase	NA	M1I1E2	Acanthocystis_turfacea_Chlorella_virus	50.8	5.6e-103
WP_019096882.1|820062_820260_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161989605.1|820328_822404_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_016714482.1|822880_824200_+	OprD family porin	NA	NA	NA	NA	NA
WP_016714483.1|824229_825897_-	FMN-binding glutamate synthase family protein	NA	NA	NA	NA	NA
WP_027610168.1|826034_827402_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_019096879.1|827403_828126_-	response regulator	NA	W8CYM9	Bacillus_phage	34.3	4.9e-31
WP_161989606.1|828266_830564_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_016714487.1|830945_832556_+	sensor domain-containing diguanylate cyclase	NA	NA	NA	NA	NA
WP_089230320.1|832908_834051_+	Abi family protein	NA	NA	NA	NA	NA
WP_080922078.1|834218_834512_-	DCL family protein	NA	NA	NA	NA	NA
WP_161989607.1|834549_837138_-	DEAD/DEAH box helicase	NA	A7J6T1	Paramecium_bursaria_Chlorella_virus	26.2	9.7e-13
WP_089230322.1|837137_838076_-	DUF1837 domain-containing protein	NA	NA	NA	NA	NA
WP_089230343.1|838521_839502_-|integrase	integrase domain-containing protein	integrase	NA	NA	NA	NA
WP_161989608.1|840431_840773_-|integrase	integrase	integrase	NA	NA	NA	NA
WP_019096874.1|840904_841255_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_104883150.1|841251_841575_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_161989609.1|842119_844588_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080516504.1|844762_845038_-	hypothetical protein	NA	NA	NA	NA	NA
WP_161989610.1|845034_846015_-|integrase	integrase domain-containing protein	integrase	NA	NA	NA	NA
WP_161989611.1|846943_848263_-|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	A0A1B0VMI6	Pseudomonas_phage	38.3	1.3e-66
856276:856295	attR	TGTGCCGGCCCTTTCGCGGG	NA	NA	NA	NA
>prophage 2
NZ_AP022324	Pseudomonas putida strain TS312	5681150	1596761	1604540	5681150		Thermobifida_phage(16.67%)	10	NA	NA
WP_016713140.1|1596761_1597616_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	32.8	6.2e-09
WP_016713139.1|1597618_1598083_-	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA	NA
WP_003255135.1|1598095_1598404_-	ribosome-associated translation inhibitor RaiA	NA	A0A0K1LP60	Escherichia_phage	34.1	4.4e-05
WP_025753783.1|1598483_1599977_-	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_010952146.1|1600153_1600879_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.5	8.4e-23
WP_012270658.1|1600879_1601404_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_019099457.1|1601390_1601963_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_016713136.1|1601971_1602496_-	HAD family hydrolase	NA	A0A140XBD6	Dickeya_phage	47.4	9.0e-27
WP_019099458.1|1602507_1603482_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	32.8	4.7e-37
WP_016713134.1|1603730_1604540_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.5	4.5e-25
>prophage 3
NZ_AP022324	Pseudomonas putida strain TS312	5681150	4094655	4103148	5681150	tRNA	uncultured_Caudovirales_phage(75.0%)	9	NA	NA
WP_003251184.1|4094655_4095327_+	Bax inhibitor-1/YccA family protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	91.0	2.1e-105
WP_019096736.1|4095531_4096911_+	uracil-xanthine permease	NA	H9YQ34	environmental_Halophage	51.1	1.3e-27
WP_019096735.1|4097007_4097400_+	sulfurtransferase complex subunit TusD	NA	A0A2H4JA39	uncultured_Caudovirales_phage	79.8	7.2e-53
WP_027608790.1|4097401_4097761_+	sulfurtransferase complex subunit TusC	NA	A0A2H4J8C0	uncultured_Caudovirales_phage	62.5	4.0e-34
WP_019096733.1|4097760_4098057_+	sulfurtransferase complex subunit TusB	NA	A0A2H4JG28	uncultured_Caudovirales_phage	60.6	3.6e-25
WP_025753665.1|4098053_4098389_+	TusE/DsrC/DsvC family sulfur relay protein	NA	A0A2H4J8B6	uncultured_Caudovirales_phage	74.8	1.7e-42
WP_027615034.1|4098385_4099387_+	glycosyl transferase family protein	NA	A0A2H4JBY5	uncultured_Caudovirales_phage	80.2	1.2e-155
WP_016711491.1|4099483_4100443_+	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_016711493.1|4101867_4103148_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	54.4	4.5e-96
