assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009950805.1_ASM995080v1	NZ_CP041431	Escherichia coli strain STEC316 chromosome, complete genome	1	674618-674735	1	CRISPRCasFinder	no		cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,WYL,RT	Orphan	TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	40	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,WYL,RT	NA,NA|55aa|down_0|NZ_CP041431.1_674808_674973_-	NA|115aa|up_9|NZ_CP041431.1_662339_662684_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|up_8|NZ_CP041431.1_662872_663811_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|up_7|NZ_CP041431.1_663909_664899_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|up_6|NZ_CP041431.1_664920_666252_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|up_5|NZ_CP041431.1_666277_667486_+	PRK12379, PRK12379, propionate kinase	NA|765aa|up_4|NZ_CP041431.1_667519_669814_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|up_3|NZ_CP041431.1_669827_670217_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|up_2|NZ_CP041431.1_670288_671653_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|up_1|NZ_CP041431.1_671927_673259_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|up_0|NZ_CP041431.1_673286_674597_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_0|NZ_CP041431.1_674808_674973_-	NA	NA|234aa|down_1|NZ_CP041431.1_674995_675697_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|299aa|down_2|NZ_CP041431.1_675801_676698_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|119aa|down_3|NZ_CP041431.1_676748_677105_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|122aa|down_4|NZ_CP041431.1_677346_677712_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|329aa|down_5|NZ_CP041431.1_678004_678991_-	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|161aa|down_6|NZ_CP041431.1_679060_679543_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|100aa|down_7|NZ_CP041431.1_679638_679938_-	pfam13997, YqjK, YqjK-like protein	NA|135aa|down_8|NZ_CP041431.1_679927_680332_-	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|102aa|down_9|NZ_CP041431.1_680334_680640_-	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]
GCF_009950805.1_ASM995080v1	NZ_CP041431	Escherichia coli strain STEC316 chromosome, complete genome	2	703764-703905	2	CRISPRCasFinder	no		cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,WYL,RT	Orphan	GGATTGCACATGTAGGGCGGATAAGGCGTTCACGCCGCATCC	42	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,WYL,RT	NA|101aa|up_7|NZ_CP041431.1_695636_695939_-,NA|357aa|down_1|NZ_CP041431.1_706288_707359_-	NA|184aa|up_9|NZ_CP041431.1_693631_694183_+	pfam10688, Imp-YgjV, Bacterial inner membrane protein	NA|415aa|up_8|NZ_CP041431.1_694187_695432_-	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional	NA|101aa|up_7|NZ_CP041431.1_695636_695939_-	NA	NA|322aa|up_6|NZ_CP041431.1_696047_697013_-	TIGR03718, R_switched_Alx, integral membrane protein, TerC family	NA|329aa|up_5|NZ_CP041431.1_697295_698282_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|228aa|up_4|NZ_CP041431.1_698360_699044_-	COG2949, SanA, Uncharacterized membrane protein [Function unknown]	NA|168aa|up_3|NZ_CP041431.1_699120_699624_-	COG1451, COG1451, Predicted metal-dependent hydrolase [General function prediction only]	NA|379aa|up_2|NZ_CP041431.1_699708_700845_+	PRK15001, PRK15001, 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG	NA|139aa|up_1|NZ_CP041431.1_701115_701532_+	COG5499, COG5499, Predicted transcription regulator containing HTH domain [Transcription]	NA|673aa|up_0|NZ_CP041431.1_701576_703595_-	cd02930, DCR_FMN, 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain	NA|784aa|down_0|NZ_CP041431.1_703920_706272_-	PRK10137, PRK10137, alpha-glucosidase; Provisional	NA|357aa|down_1|NZ_CP041431.1_706288_707359_-	NA	NA|478aa|down_2|NZ_CP041431.1_707492_708926_-	PRK15238, PRK15238, inner membrane transporter YjeM; Provisional	NA|150aa|down_3|NZ_CP041431.1_708988_709438_-	PRK10202, ebgC, beta-galactosidase subunit beta	NA|1031aa|down_4|NZ_CP041431.1_709434_712527_-	PRK10340, ebgA, cryptic beta-D-galactosidase subunit alpha; Reviewed	NA|328aa|down_5|NZ_CP041431.1_712710_713694_-	PRK10339, PRK10339, DNA-binding transcriptional repressor EbgR; Provisional	NA|111aa|down_6|NZ_CP041431.1_713912_714245_+	PRK10089, PRK10089, chaperone CsaA	NA|497aa|down_7|NZ_CP041431.1_714286_715777_-	PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase; Provisional	NA|507aa|down_8|NZ_CP041431.1_716083_717604_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|208aa|down_9|NZ_CP041431.1_717757_718381_-	COG1695, COG1695, Predicted transcriptional regulators [Transcription]
GCF_009950805.1_ASM995080v1	NZ_CP041431	Escherichia coli strain STEC316 chromosome, complete genome	3	1128897-1129718	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,WYL,RT	Unclear	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	13,13,13	13	Unclear	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,WYL,RT	NA|47aa|up_1|NZ_CP041431.1_1127606_1127747_-,NA	NA|919aa|up_9|NZ_CP041431.1_1115490_1118247_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|NZ_CP041431.1_1118303_1119605_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|NZ_CP041431.1_1119652_1121887_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|NZ_CP041431.1_1121964_1122213_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_5|NZ_CP041431.1_1122212_1122548_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_4|NZ_CP041431.1_1122618_1123410_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|NZ_CP041431.1_1123637_1125275_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|NZ_CP041431.1_1125362_1126661_+	PRK00077, eno, enolase; Provisional	NA|47aa|up_1|NZ_CP041431.1_1127606_1127747_-	NA	NA|224aa|up_0|NZ_CP041431.1_1127885_1128557_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP041431.1_1130356_1131835_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP041431.1_1131861_1133139_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP041431.1_1133457_1134243_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP041431.1_1134312_1135767_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|NZ_CP041431.1_1135788_1137198_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP041431.1_1137175_1137955_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|298aa|down_6|NZ_CP041431.1_1137918_1138812_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP041431.1_1138959_1139535_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP041431.1_1139551_1139812_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP041431.1_1139802_1141074_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_009950805.1_ASM995080v1	NZ_CP041431	Escherichia coli strain STEC316 chromosome, complete genome	4	1155419-1155752	2,2,4	PILER-CR,CRT,CRISPRCasFinder	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,WYL,RT	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GNGTTCCCCGCGCCAGCGGGGATAAACCG,GTTCCCCGCGCCAGCGGGGATAAACCG	29,29,27	0	0	NA	NA	I-E:I-E:I-E	4,5,4	5	TypeI-E	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,WYL,RT	NA,NA	NA|245aa|up_9|NZ_CP041431.1_1145417_1146152_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_8|NZ_CP041431.1_1146416_1146569_+	pfam01848, HOK_GEF, Hok/gef family	cas3|900aa|up_7|NZ_CP041431.1_1146763_1149463_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_CP041431.1_1149560_1151123_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|NZ_CP041431.1_1151119_1151656_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|352aa|up_4|NZ_CP041431.1_1151667_1152723_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP041431.1_1152733_1153480_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP041431.1_1153461_1154112_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|NZ_CP041431.1_1154108_1155032_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP041431.1_1155028_1155322_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP041431.1_1155772_1156810_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP041431.1_1157061_1157970_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP041431.1_1157971_1159399_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP041431.1_1159398_1160004_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP041431.1_1160053_1160377_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP041431.1_1160570_1160882_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP041431.1_1160900_1161611_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP041431.1_1161610_1162090_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP041431.1_1162086_1163136_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP041431.1_1163116_1163878_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_009950805.1_ASM995080v1	NZ_CP041431	Escherichia coli strain STEC316 chromosome, complete genome	5	3527318-3527463	5	CRISPRCasFinder	no		cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,WYL,RT	Orphan	CGATTTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCG	53	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,WYL,RT	NA|94aa|up_9|NZ_CP041431.1_3521300_3521582_+,NA|252aa|up_6|NZ_CP041431.1_3522307_3523063_+,NA|192aa|up_5|NZ_CP041431.1_3523073_3523649_+,NA|95aa|up_4|NZ_CP041431.1_3523733_3524018_+,NA	NA|94aa|up_9|NZ_CP041431.1_3521300_3521582_+	NA	NA|74aa|up_8|NZ_CP041431.1_3521680_3521902_+	PHA00080, PHA00080, DksA-like zinc finger domain containing protein	NA|136aa|up_7|NZ_CP041431.1_3521898_3522306_+	pfam13935, Ead_Ea22, Ead/Ea22-like protein	NA|252aa|up_6|NZ_CP041431.1_3522307_3523063_+	NA	NA|192aa|up_5|NZ_CP041431.1_3523073_3523649_+	NA	NA|95aa|up_4|NZ_CP041431.1_3523733_3524018_+	NA	NA|51aa|up_3|NZ_CP041431.1_3523995_3524148_+	pfam06440, DNA_pol3_theta, DNA polymerase III, theta subunit	NA|73aa|up_2|NZ_CP041431.1_3524573_3524792_+	pfam07825, Exc, Excisionase-like protein	NA|357aa|up_1|NZ_CP041431.1_3524769_3525840_+	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|428aa|up_0|NZ_CP041431.1_3525974_3527258_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP041431.1_3527491_3529753_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP041431.1_3529935_3531369_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP041431.1_3531444_3532497_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP041431.1_3532680_3533634_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP041431.1_3533674_3534670_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP041431.1_3534824_3535643_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP041431.1_3535643_3536702_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP041431.1_3536704_3537394_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP041431.1_3537393_3538167_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP041431.1_3538332_3538482_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
