The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP048022	Lactobacillus plantarum strain CACC 558 chromosome, complete genome	3250114	616811	623878	3250114	integrase	Escherichia_phage(50.0%)	6	612859:612872	629307:629320
612859:612872	attL	ATATACGCTCTAAT	NA	NA	NA	NA
WP_162044970.1|616811_617675_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	K7QKA7	Escherichia_phage	62.4	6.5e-99
WP_085439099.1|617697_618987_+	cellulase family glycosylhydrolase	NA	A0A2K9VCN9	Lactobacillus_phage	24.1	4.5e-27
WP_085439100.1|619046_619628_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	45.1	3.3e-38
WP_162044971.1|619637_620666_+	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	41.8	5.4e-68
WP_162044972.1|620735_621578_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	37.2	1.1e-34
WP_162044973.1|623290_623878_-|integrase	tyrosine-type recombinase/integrase	integrase	D2XR58	Bacillus_phage	42.5	9.4e-33
629307:629320	attR	ATTAGAGCGTATAT	NA	NA	NA	NA
>prophage 2
NZ_CP048022	Lactobacillus plantarum strain CACC 558 chromosome, complete genome	3250114	829828	839667	3250114		Lactobacillus_phage(87.5%)	8	NA	NA
WP_044430313.1|829828_831067_+	hypothetical protein	NA	A0A2P0ZL72	Lactobacillus_phage	97.4	1.4e-216
WP_015825455.1|831157_832129_-	peptidase S41	NA	A0A2P0ZL68	Lactobacillus_phage	99.4	1.8e-182
WP_003643099.1|832314_833262_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	100.0	2.7e-178
WP_003643097.1|833605_834220_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	100.0	6.3e-112
WP_046810985.1|834222_836661_+	flavocytochrome c	NA	A0A2P0ZL82	Lactobacillus_phage	99.8	0.0e+00
WP_044430320.1|836748_837309_+	hypothetical protein	NA	A0A2P0ZL75	Lactobacillus_phage	98.4	8.5e-100
WP_033608589.1|837379_837820_-	nucleoside 2-deoxyribosyltransferase	NA	A0A2P0ZL88	Lactobacillus_phage	97.3	1.5e-75
WP_162044993.1|838671_839667_+	glycosyltransferase family 2 protein	NA	S5FKN0	Shigella_phage	38.8	1.4e-52
>prophage 3
NZ_CP048022	Lactobacillus plantarum strain CACC 558 chromosome, complete genome	3250114	1357337	1442529	3250114	tRNA,tail,portal,head,capsid,integrase,holin,protease,terminase	Lactobacillus_phage(78.57%)	88	1382919:1382936	1449466:1449483
WP_027821256.1|1357337_1358261_-|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_162045027.1|1358745_1359267_-	shikimate kinase	NA	NA	NA	NA	NA
WP_015825650.1|1359269_1360367_-	prephenate dehydrogenase	NA	NA	NA	NA	NA
WP_162045028.1|1360369_1361668_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_003644492.1|1361681_1362209_-	amino acid biosynthesis protein	NA	NA	NA	NA	NA
WP_013355607.1|1362217_1363387_-	chorismate synthase	NA	NA	NA	NA	NA
WP_061871736.1|1363379_1364834_-	MFS transporter	NA	NA	NA	NA	NA
WP_003640723.1|1365482_1365836_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_024002734.1|1365858_1368435_-	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	23.3	9.6e-21
WP_061871738.1|1368449_1368755_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003640726.1|1368744_1369044_-	YlxR family protein	NA	NA	NA	NA	NA
WP_061871739.1|1369088_1370306_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_003640728.1|1370326_1370803_-	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_003640729.1|1371098_1375412_-	DNA polymerase III subunit alpha	NA	A0A1X9SH08	Bradyrhizobium_phage	34.0	1.0e-14
WP_003640732.1|1375905_1377615_-|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
WP_162045029.1|1377654_1378932_-|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_003640734.1|1378969_1379755_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_046039550.1|1379770_1380550_-	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	42.3	6.9e-23
WP_160230929.1|1380669_1381233_-	ribosome recycling factor	NA	NA	NA	NA	NA
WP_003640737.1|1381234_1381957_-	UMP kinase	NA	NA	NA	NA	NA
WP_003644498.1|1382156_1383035_-	elongation factor Ts	NA	NA	NA	NA	NA
1382919:1382936	attL	GTCAACGGCTTTTTCCAT	NA	NA	NA	NA
WP_003640739.1|1383137_1383941_-	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_003640740.1|1384165_1384888_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_003640741.1|1385176_1386175_-	D-2-hydroxyacid dehydrogenase	NA	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	34.9	2.3e-47
WP_003640742.1|1386259_1386565_-	GIY-YIG nuclease family protein	NA	NA	NA	NA	NA
WP_003644499.1|1386548_1387307_-|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	tRNA	NA	NA	NA	NA
WP_065080367.1|1387418_1388054_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_013355613.1|1388110_1388341_-	YneF family protein	NA	NA	NA	NA	NA
WP_003644501.1|1388444_1388684_-	DUF896 domain-containing protein	NA	NA	NA	NA	NA
WP_003640747.1|1388835_1389468_+	transcriptional repressor LexA	NA	A0A1B2APZ1	Phage_Wrath	56.2	2.3e-16
WP_157262971.1|1389627_1389720_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003644502.1|1390093_1390723_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003640749.1|1390772_1391942_-	hydroxymethylglutaryl-CoA synthase	NA	NA	NA	NA	NA
WP_003640750.1|1391977_1392370_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003644503.1|1392533_1392926_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003644504.1|1393370_1394312_+	glycosyltransferase family 2 protein	NA	V9QJB1	Oenococcus_phage	49.0	2.4e-78
WP_031275254.1|1395063_1395636_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_162045030.1|1395787_1396972_-	LCP family protein	NA	NA	NA	NA	NA
WP_003644506.1|1396952_1397744_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.8	2.7e-30
WP_003644507.1|1397762_1399505_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003644508.1|1399983_1401195_-	FtsW/RodA/SpoVE family cell cycle protein	NA	NA	NA	NA	NA
WP_013355618.1|1402434_1402965_-|holin	holin	holin	E9LUS0	Lactobacillus_phage	98.8	6.3e-36
WP_060417952.1|1402977_1403241_-|holin	holin	holin	E9LUR9	Lactobacillus_phage	97.7	2.8e-37
WP_060417951.1|1403240_1404401_-	LysM peptidoglycan-binding domain-containing protein	NA	E9LUR8	Lactobacillus_phage	89.5	6.8e-192
WP_060417950.1|1404412_1404625_-	hypothetical protein	NA	A0A0A1ENR9	Lactobacillus_phage	73.9	3.4e-17
WP_060417949.1|1404621_1405632_-	hypothetical protein	NA	A0A2P0ZLF6	Lactobacillus_phage	89.8	1.8e-63
WP_060417948.1|1405780_1406032_-	hypothetical protein	NA	E9LUR5	Lactobacillus_phage	100.0	1.4e-30
WP_162045031.1|1409155_1411513_-	hypothetical protein	NA	E9LUR3	Lactobacillus_phage	93.7	0.0e+00
WP_063733638.1|1411582_1413352_-|tail	phage tail protein	tail	E9LUR2	Lactobacillus_phage	93.5	0.0e+00
WP_063733637.1|1413428_1418165_-	peptidase M23	NA	A0A2P0ZLG0	Lactobacillus_phage	73.6	0.0e+00
WP_162045032.1|1418196_1418382_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060417943.1|1418426_1418801_-	hypothetical protein	NA	A0A2P0ZLH4	Lactobacillus_phage	95.2	2.7e-57
WP_162045033.1|1418867_1419533_-|tail	phage tail protein	tail	A0A2P0ZLH1	Lactobacillus_phage	91.9	3.8e-107
WP_060417941.1|1419547_1419928_-	DUF806 family protein	NA	A0A2P0ZLF4	Lactobacillus_phage	92.1	1.7e-59
WP_013355628.1|1419927_1420335_-	hypothetical protein	NA	A0A2P0ZLE6	Lactobacillus_phage	93.8	2.9e-65
WP_016511016.1|1420337_1420685_-|head	phage head closure protein	head	A0A2P0ZLF0	Lactobacillus_phage	73.0	2.0e-43
WP_013355629.1|1420674_1421007_-|head,tail	phage gp6-like head-tail connector protein	head,tail	E9LUQ4	Lactobacillus_phage	91.7	3.4e-48
WP_013355630.1|1421079_1422312_-|capsid	phage major capsid protein	capsid	E9LUQ3	Lactobacillus_phage	92.6	4.5e-210
WP_013355631.1|1422311_1423067_-|protease	Clp protease ClpP	protease	E9LUQ2	Lactobacillus_phage	93.2	1.5e-123
WP_013355632.1|1423044_1424238_-|portal	phage portal protein	portal	E9LUQ1	Lactobacillus_phage	98.0	1.3e-222
WP_003644528.1|1424240_1424435_-	DUF1056 family protein	NA	E9LUQ0	Lactobacillus_phage	98.4	7.4e-27
WP_016511012.1|1424424_1426323_-|terminase	terminase large subunit	terminase	E9LUP9	Lactobacillus_phage	92.6	0.0e+00
WP_016511011.1|1426332_1426788_-|terminase	phage terminase small subunit P27 family	terminase	E9LUP8	Lactobacillus_phage	96.7	3.0e-79
WP_013355635.1|1426978_1427230_-	hypothetical protein	NA	NA	NA	NA	NA
WP_162045034.1|1427247_1427517_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033098962.1|1427522_1428035_-	HNH endonuclease	NA	E9LUP7	Lactobacillus_phage	91.0	4.0e-80
WP_060417938.1|1428333_1429146_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013355640.1|1429815_1430244_-	transcriptional regulator	NA	E9LUP5	Lactobacillus_phage	82.4	2.9e-63
WP_013355641.1|1430518_1430827_-	hypothetical protein	NA	E9LUN7	Lactobacillus_phage	94.1	3.2e-48
WP_013355642.1|1430962_1431748_-	ATP-binding protein	NA	E9LUN6	Lactobacillus_phage	98.1	2.7e-144
WP_013355643.1|1431747_1432545_-	hypothetical protein	NA	Q9AZA0	Lactobacillus_prophage	69.0	4.2e-52
WP_033098960.1|1432646_1432904_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003641371.1|1433359_1433560_-	hypothetical protein	NA	E9LUT7	Lactobacillus_phage	89.4	1.0e-26
WP_016511003.1|1433562_1433811_-	hypothetical protein	NA	E9LUT6	Lactobacillus_phage	75.0	2.3e-28
WP_003641369.1|1433823_1434027_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003641368.1|1434192_1434483_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003644548.1|1435076_1435337_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003644549.1|1435394_1435751_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003644550.1|1435747_1435951_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003644551.1|1435961_1436714_-	phage repressor protein/antirepressor Ant	NA	E9LUT0	Lactobacillus_phage	97.3	9.8e-59
WP_003644552.1|1436726_1436942_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003641361.1|1437198_1437525_+	helix-turn-helix transcriptional regulator	NA	A0A1B0Y2R0	Lactobacillus_phage	44.1	6.9e-17
WP_003641360.1|1437555_1437945_+	ImmA/IrrE family metallo-endopeptidase	NA	D6PSS8	Lactobacillus_phage	54.3	4.6e-36
WP_016511000.1|1438007_1438886_+	hypothetical protein	NA	A0A2H4J549	uncultured_Caudovirales_phage	34.8	3.0e-06
WP_003644554.1|1438900_1439101_+	hypothetical protein	NA	E9LUS6	Lactobacillus_phage	97.0	4.2e-25
WP_003644557.1|1440442_1440700_+	hypothetical protein	NA	A0A2P0ZL96	Lactobacillus_phage	76.2	1.0e-31
WP_003644558.1|1440883_1441198_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016510998.1|1441365_1442529_+|integrase	site-specific integrase	integrase	B4XYR4	Lactobacillus_phage	36.5	9.2e-56
1449466:1449483	attR	GTCAACGGCTTTTTCCAT	NA	NA	NA	NA
>prophage 4
NZ_CP048022	Lactobacillus plantarum strain CACC 558 chromosome, complete genome	3250114	1724599	1769410	3250114	portal,tail,capsid,holin,terminase	Lactobacillus_phage(75.68%)	54	NA	NA
WP_003644665.1|1724599_1726330_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.6	2.6e-46
WP_162045045.1|1726553_1726946_-	YxeA family protein	NA	NA	NA	NA	NA
WP_003644667.1|1727168_1728020_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_104795830.1|1729115_1729499_-|holin	holin	holin	A0A2H4PBB2	Lactobacillus_phage	83.7	9.9e-15
WP_162045046.1|1729485_1729782_-	hypothetical protein	NA	A0A1I9KK55	Lactobacillus_phage	77.6	1.5e-39
WP_162045047.1|1729782_1730961_-	LysM peptidoglycan-binding domain-containing protein	NA	E9LUR8	Lactobacillus_phage	87.8	5.1e-195
WP_162045048.1|1730972_1731218_-	hypothetical protein	NA	A0A0A1ENR9	Lactobacillus_phage	78.5	4.7e-18
WP_162045049.1|1731214_1732273_-	collagen-like protein	NA	A0A2P0ZLF6	Lactobacillus_phage	76.3	6.7e-53
WP_162045050.1|1732330_1734496_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA	NA
WP_162045051.1|1734473_1734767_-	hypothetical protein	NA	NA	NA	NA	NA
WP_162045052.1|1734759_1735878_-	hypothetical protein	NA	O03938	Lactobacillus_phage	91.4	5.3e-194
WP_162045053.1|1735890_1736700_-|tail	phage tail family protein	tail	D2KRB8	Lactobacillus_phage	41.2	1.3e-51
WP_162045054.1|1736699_1741568_-	peptidoglycan DD-metalloendopeptidase family protein	NA	O03937	Lactobacillus_phage	64.4	0.0e+00
WP_162045055.1|1741571_1742195_-	hypothetical protein	NA	O03936	Lactobacillus_phage	94.9	1.6e-102
WP_162045056.1|1742200_1742632_-	hypothetical protein	NA	O03935	Lactobacillus_phage	96.5	6.8e-73
WP_162045057.1|1742684_1743200_-|capsid	capsid protein	capsid	O03972	Lactobacillus_phage	91.2	2.5e-82
WP_162045058.1|1743234_1743639_-|capsid	minor capsid protein	capsid	O03934	Lactobacillus_phage	97.0	5.3e-67
WP_162045059.1|1743638_1743986_-|capsid	capsid protein	capsid	O03933	Lactobacillus_phage	79.7	7.5e-46
WP_162045060.1|1743985_1744339_-|capsid	capsid protein	capsid	O03932	Lactobacillus_phage	89.7	6.9e-55
WP_053339012.1|1744335_1744764_-	hypothetical protein	NA	NA	NA	NA	NA
WP_053339013.1|1744790_1745846_-	hypothetical protein	NA	O03966	Lactobacillus_phage	99.1	9.8e-198
WP_162045061.1|1745862_1746477_-	hypothetical protein	NA	O03931	Lactobacillus_phage	86.3	7.2e-68
WP_162045062.1|1746578_1747721_-|capsid	capsid protein	capsid	O03929	Lactobacillus_phage	95.9	5.3e-173
WP_162045063.1|1747717_1749244_-|portal	phage portal protein	portal	O03928	Lactobacillus_phage	83.9	1.4e-250
WP_162045064.1|1750341_1750851_-	hypothetical protein	NA	Q37951	Lactococcus_phage	61.2	7.9e-52
WP_162045065.1|1751414_1751933_-|terminase	terminase small subunit	terminase	O03926	Lactobacillus_phage	93.0	1.2e-79
WP_064522742.1|1751986_1752244_-	hypothetical protein	NA	A0A0N9SKC5	Staphylococcus_phage	47.6	1.3e-15
WP_015380624.1|1752366_1752564_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015380625.1|1753458_1754076_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003642805.1|1754340_1754802_-	transcriptional regulator	NA	D6PSV8	Lactobacillus_phage	57.0	1.1e-39
WP_162045066.1|1755088_1755520_-	DUF1642 domain-containing protein	NA	E9LUP3	Lactobacillus_phage	57.6	6.1e-37
WP_162045067.1|1755879_1756371_-	class I SAM-dependent methyltransferase	NA	O03918	Lactobacillus_phage	89.3	7.5e-84
WP_105316119.1|1756455_1756671_-	helix-turn-helix transcriptional regulator	NA	D2IZX1	Enterococcus_phage	39.1	6.1e-06
WP_064505709.1|1756804_1756969_+	YjzC family protein	NA	A0A0A7RTS6	Clostridium_phage	66.0	3.0e-13
WP_033611989.1|1757235_1757619_-	endodeoxyribonuclease	NA	NA	NA	NA	NA
WP_033611990.1|1757615_1758134_-	hypothetical protein	NA	O03915	Lactobacillus_phage	50.0	2.0e-34
WP_033611991.1|1758130_1758418_-	hypothetical protein	NA	NA	NA	NA	NA
WP_162045069.1|1758414_1759323_-	DnaD domain protein	NA	NA	NA	NA	NA
WP_033611993.1|1759401_1760154_-	phage protein	NA	A0A0P0IZH9	Lactobacillus_phage	51.4	2.4e-73
WP_162045070.1|1760185_1761073_-	recombinase RecT	NA	E9LUM3	Lactobacillus_phage	47.4	2.5e-61
WP_162045072.1|1761069_1761507_-	hypothetical protein	NA	NA	NA	NA	NA
WP_114693044.1|1761784_1762072_+	hypothetical protein	NA	A0A2H4JEH2	uncultured_Caudovirales_phage	50.0	4.3e-23
WP_162044941.1|1762049_1762211_-	hypothetical protein	NA	NA	NA	NA	NA
WP_162045073.1|1762321_1762834_-	helix-turn-helix transcriptional regulator	NA	D6PST4	Lactobacillus_phage	43.5	2.7e-28
WP_162045074.1|1762900_1763206_-	DUF771 domain-containing protein	NA	NA	NA	NA	NA
WP_011101083.1|1763400_1763631_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_162045076.1|1763803_1764166_+	helix-turn-helix domain-containing protein	NA	A0A0U4KKM4	Exiguobacterium_phage	32.0	2.0e-09
WP_003642784.1|1764177_1764591_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A0M4RD70	Bacillus_phage	31.3	3.4e-05
WP_162045078.1|1764616_1765963_+	DUF4041 domain-containing protein	NA	A0A1B0Y697	Lactobacillus_phage	52.9	2.3e-82
WP_162045079.1|1766012_1766546_+	hypothetical protein	NA	NA	NA	NA	NA
WP_022638156.1|1766609_1766807_-	hypothetical protein	NA	NA	NA	NA	NA
WP_162045080.1|1766789_1767362_+	hypothetical protein	NA	NA	NA	NA	NA
WP_162045082.1|1767348_1767780_+	hypothetical protein	NA	A0A1Q1PVT2	Staphylococcus_phage	25.9	2.1e-05
WP_076636271.1|1768447_1769410_+	AAA family ATPase	NA	E9LUK9	Lactobacillus_phage	38.7	2.6e-35
>prophage 5
NZ_CP048022	Lactobacillus plantarum strain CACC 558 chromosome, complete genome	3250114	1971378	1979892	3250114		Synechococcus_phage(33.33%)	9	NA	NA
WP_065080107.1|1971378_1971957_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.9	2.8e-21
WP_013355836.1|1971949_1972975_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A0E3F760	Synechococcus_phage	40.7	5.4e-60
WP_003642591.1|1972971_1974426_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	34.0	2.5e-50
WP_003645864.1|1974410_1976630_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.3	4.5e-144
WP_016511634.1|1976622_1977300_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_003642588.1|1977302_1977557_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_003642587.1|1977558_1978290_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4SM18	Cyanophage	37.3	1.6e-37
WP_011101896.1|1978292_1979423_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_003642585.1|1979406_1979892_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	41.0	2.3e-16
>prophage 6
NZ_CP048022	Lactobacillus plantarum strain CACC 558 chromosome, complete genome	3250114	2823382	2883844	3250114	portal,tRNA,head,capsid,integrase,terminase	Streptococcus_phage(18.75%)	49	2871673:2871712	2876686:2876725
WP_011102289.1|2823382_2825293_-|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003641622.1|2825311_2826703_-|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	tRNA	NA	NA	NA	NA
WP_011102290.1|2826934_2827903_-	KH domain-containing protein	NA	NA	NA	NA	NA
WP_011102291.1|2828388_2829642_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_015826199.1|2829774_2831412_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003641627.1|2832126_2832960_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_003640224.1|2832975_2833320_-	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003640225.1|2833430_2833565_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_003641628.1|2834070_2835438_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_003641629.1|2835615_2836755_+	DNA polymerase III subunit beta	NA	D0R7I4	Paenibacillus_phage	29.9	4.3e-13
WP_003641630.1|2837279_2837513_+	S4 domain-containing protein YaaA	NA	NA	NA	NA	NA
WP_003641631.1|2837513_2838638_+	DNA replication/repair protein RecF	NA	NA	NA	NA	NA
WP_003641632.1|2838634_2840581_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	46.7	5.5e-146
WP_003641633.1|2840745_2843307_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	37.4	2.8e-113
WP_003637271.1|2843929_2844229_+	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_065080092.1|2844265_2844868_+	single-stranded DNA-binding protein	NA	A0A218MNB4	uncultured_virus	68.0	2.8e-40
WP_003641635.1|2844906_2845143_+	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_003643610.1|2845323_2847336_+	DHH family phosphoesterase	NA	NA	NA	NA	NA
WP_003641637.1|2847348_2847801_+	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_003641638.1|2847816_2849241_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	53.1	9.7e-124
WP_003641639.1|2849462_2850686_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	33.6	2.4e-54
WP_003643611.1|2850707_2851505_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	39.2	1.0e-45
WP_003641641.1|2851523_2852762_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	52.9	1.1e-110
WP_003641642.1|2853222_2854839_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_162045182.1|2855169_2857074_+	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_003641645.1|2857063_2858203_+	glucose-1-phosphate adenylyltransferase	NA	NA	NA	NA	NA
WP_162045183.1|2858199_2859372_+	glucose-1-phosphate adenylyltransferase subunit GlgD	NA	NA	NA	NA	NA
WP_046947477.1|2859364_2860804_+	glycogen synthase GlgA	NA	NA	NA	NA	NA
WP_003643612.1|2860823_2863220_+	glycogen/starch/alpha-glucan phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	42.9	1.6e-09
WP_003641650.1|2865386_2866154_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_003641651.1|2866305_2866977_-	beta-phosphoglucomutase	NA	NA	NA	NA	NA
WP_011100855.1|2866994_2869715_-	glycoside hydrolase family 65 protein	NA	NA	NA	NA	NA
WP_003641653.1|2870102_2870552_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_003643615.1|2870749_2870950_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	74.6	2.8e-21
WP_003641655.1|2871041_2871266_+	hypothetical protein	NA	NA	NA	NA	NA
2871673:2871712	attL	CGTGGTCCATATGGTGGTCCAACGTGGTCCACTTGGTAAA	NA	NA	NA	NA
WP_162045184.1|2871733_2872888_-|integrase	site-specific integrase	integrase	A0A172LN96	Lactococcus_phage	36.7	1.4e-59
WP_162045185.1|2872949_2873654_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_041153480.1|2873791_2873971_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_162045186.1|2874239_2874470_+	hypothetical protein	NA	NA	NA	NA	NA
WP_162045187.1|2874483_2875284_+	DNA replication protein	NA	NA	NA	NA	NA
WP_162045188.1|2875283_2876678_+	virulence protein	NA	A0A1W6JQD6	Staphylococcus_phage	40.0	7.4e-68
WP_162045189.1|2876778_2877258_+	hypothetical protein	NA	NA	NA	NA	NA
2876686:2876725	attR	TTTACCAAGTGGACCACGTTGGACCACCATATGGACCACG	NA	NA	NA	NA
WP_162045190.1|2877273_2877465_+	hypothetical protein	NA	NA	NA	NA	NA
WP_162045191.1|2877451_2877793_+|head	phage head closure protein	head	NA	NA	NA	NA
WP_162045192.1|2877785_2878175_+	HNH endonuclease	NA	A0A1J0MFT4	Staphylococcus_phage	44.7	1.0e-19
WP_162045193.1|2878889_2879363_+|terminase	phage terminase small subunit P27 family	terminase	NA	NA	NA	NA
WP_162045194.1|2879359_2881063_+|terminase	terminase large subunit	terminase	A0A2H4JBN3	uncultured_Caudovirales_phage	40.7	3.7e-122
WP_162045195.1|2881217_2882318_+|portal	phage portal protein	portal	A0A2H4J9Q5	uncultured_Caudovirales_phage	34.0	4.6e-49
WP_162045196.1|2882314_2883844_+|capsid	phage major capsid protein	capsid	B8R651	Lactobacillus_phage	25.1	3.4e-42
>prophage 7
NZ_CP048022	Lactobacillus plantarum strain CACC 558 chromosome, complete genome	3250114	3177351	3226501	3250114	bacteriocin,protease	Bacillus_virus(50.0%)	49	NA	NA
WP_003643762.1|3177351_3177915_-|protease	matrixin family metalloprotease	protease	NA	NA	NA	NA
WP_024002428.1|3178108_3178777_+	ribose 5-phosphate isomerase A	NA	NA	NA	NA	NA
WP_003641930.1|3178934_3180440_+	multicopper oxidase domain-containing protein	NA	NA	NA	NA	NA
WP_003643763.1|3180704_3181073_+	DUF1304 domain-containing protein	NA	NA	NA	NA	NA
WP_003641932.1|3181185_3181695_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_011100975.1|3181725_3182922_-	DUF2075 domain-containing protein	NA	NA	NA	NA	NA
WP_003646440.1|3183031_3183502_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_011100976.1|3183520_3183976_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003641936.1|3184079_3184652_+	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit	NA	NA	NA	NA	NA
WP_011100977.1|3184817_3185738_-	ribonucleoside hydrolase RihC	NA	NA	NA	NA	NA
WP_162045213.1|3185874_3186774_+	oxidoreductase	NA	NA	NA	NA	NA
WP_011100979.1|3187213_3189094_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011100980.1|3189265_3189712_-	ribonuclease H	NA	NA	NA	NA	NA
WP_003643770.1|3189951_3191478_+	ABC transporter permease/substrate-binding protein	NA	NA	NA	NA	NA
WP_003641941.1|3191478_3192450_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	1.7e-23
WP_003646444.1|3192527_3193859_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003643773.1|3194324_3195842_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003643774.1|3195856_3197686_+	type 1 glycerol-3-phosphate oxidase	NA	NA	NA	NA	NA
WP_021731937.1|3197703_3198423_+	aquaporin family protein	NA	M1HWZ0	Paramecium_bursaria_Chlorella_virus	31.9	3.2e-30
WP_044428967.1|3200068_3203764_+	MucBP domain-containing protein	NA	NA	NA	NA	NA
WP_162045223.1|3205358_3205553_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011100983.1|3205567_3205987_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011100984.1|3206035_3206299_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011100985.1|3206400_3206679_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015639936.1|3207761_3207968_+	hypothetical protein	NA	NA	NA	NA	NA
WP_074161480.1|3208348_3208465_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011100986.1|3208588_3209506_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016526893.1|3209512_3209686_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011100987.1|3210230_3210773_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_011100988.1|3210787_3211051_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003643788.1|3211167_3211371_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003646452.1|3211495_3211735_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003646453.1|3211752_3212139_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157951538.1|3212982_3213129_+	glycohydrolase toxin TNT-related protein	NA	NA	NA	NA	NA
WP_011100990.1|3213205_3213613_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011100991.1|3214883_3215162_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003641962.1|3215488_3216106_-	sugar O-acetyltransferase	NA	NA	NA	NA	NA
WP_003641963.1|3216109_3217264_-	MFS transporter	NA	NA	NA	NA	NA
WP_011100993.1|3217267_3218059_-	HAD family hydrolase	NA	NA	NA	NA	NA
WP_003641965.1|3218129_3219002_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_162045214.1|3219161_3219977_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_011100994.1|3220502_3221879_+	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA	NA
WP_011100995.1|3221923_3223108_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003641969.1|3223492_3223696_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003641971.1|3224107_3224776_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_003641972.1|3224772_3224946_-|bacteriocin	two-peptide bacteriocin plantaricin JK subunit PlnK	bacteriocin	NA	NA	NA	NA
WP_003641973.1|3224976_3225144_-|bacteriocin	two-peptide bacteriocin plantaricin JK subunit PlnJ	bacteriocin	NA	NA	NA	NA
WP_003641974.1|3226005_3226206_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_003641975.1|3226333_3226501_+|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
>prophage 1
NZ_CP048023	Lactobacillus plantarum strain CACC 558 plasmid p1CACC558, complete sequence	53289	25925	33628	53289	transposase	Enterococcus_phage(28.57%)	7	NA	NA
WP_033098919.1|25925_28073_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	60.5	2.1e-255
WP_013356287.1|28179_29106_+	ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4P8A9	Corynebacterium_phage	32.4	2.0e-37
WP_033098914.1|29120_30071_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	54.6	5.5e-99
WP_143142877.1|30198_31011_-|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	29.0	2.5e-15
WP_013356284.1|31124_31757_+	recombinase family protein	NA	A0A286S1P7	Klebsiella_phage	33.2	4.7e-14
WP_013356283.1|31843_32746_+	YitT family protein	NA	M1Q1P6	Streptococcus_phage	40.3	6.3e-52
WP_087613290.1|32853_33628_+|transposase	IS5-like element ISLpl3 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	53.2	2.1e-27
>prophage 1
NZ_CP048024	Lactobacillus plantarum strain CACC 558 plasmid p2CACC558, complete sequence	45493	0	5736	45493		Bacillus_phage(100.0%)	3	NA	NA
WP_027822611.1|934_1219_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_027822610.1|1354_2017_-	metalloregulator ArsR/SmtB family transcription factor	NA	NA	NA	NA	NA
WP_162045227.1|2367_5736_-	beta-fructosidase	NA	F8WPR5	Bacillus_phage	26.7	7.6e-34
>prophage 2
NZ_CP048024	Lactobacillus plantarum strain CACC 558 plasmid p2CACC558, complete sequence	45493	12327	13972	45493	transposase	Escherichia_phage(50.0%)	2	NA	NA
WP_072534733.1|12327_12882_-	recombinase family protein	NA	A0A1J1J8Z4	Escherichia_phage	44.6	1.5e-32
WP_004271307.1|13048_13972_-|transposase	IS30 family transposase	transposase	H7BVY4	unidentified_phage	31.9	6.7e-33
>prophage 3
NZ_CP048024	Lactobacillus plantarum strain CACC 558 plasmid p2CACC558, complete sequence	45493	17298	17886	45493		Vibrio_phage(100.0%)	1	NA	NA
WP_046811125.1|17298_17886_-	recombinase family protein	NA	M4QQC6	Vibrio_phage	42.4	5.9e-19
>prophage 4
NZ_CP048024	Lactobacillus plantarum strain CACC 558 plasmid p2CACC558, complete sequence	45493	24698	26834	45493		Streptococcus_phage(100.0%)	1	NA	NA
WP_162045228.1|24698_26834_-	DNA topoisomerase III	NA	A0A1X9I6W8	Streptococcus_phage	46.4	2.9e-108
>prophage 5
NZ_CP048024	Lactobacillus plantarum strain CACC 558 plasmid p2CACC558, complete sequence	45493	34652	44662	45493	transposase	Enterococcus_phage(20.0%)	14	NA	NA
WP_027822893.1|34652_35555_+	AAA family ATPase	NA	F0PIG8	Enterococcus_phage	32.1	4.1e-27
WP_016526748.1|35541_35811_+	hypothetical protein	NA	NA	NA	NA	NA
WP_027822894.1|36048_36360_-	hypothetical protein	NA	NA	NA	NA	NA
WP_027822895.1|36473_37775_+	Y-family DNA polymerase	NA	M1Q231	Streptococcus_phage	40.0	6.4e-82
WP_027822896.1|37767_38088_+	hypothetical protein	NA	NA	NA	NA	NA
WP_027822897.1|38080_38479_+	hypothetical protein	NA	NA	NA	NA	NA
WP_027822898.1|38551_38875_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080280605.1|39228_40263_+|transposase	IS30 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	34.4	1.8e-42
WP_111443464.1|40645_41062_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010495033.1|41079_41517_-	OsmC family protein	NA	NA	NA	NA	NA
WP_027822617.1|41653_42094_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_027822616.1|42120_42483_+	hypothetical protein	NA	NA	NA	NA	NA
WP_027822615.1|42988_44326_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	23.5	1.2e-19
WP_064972126.1|44347_44662_-	thioredoxin	NA	A0A1X9I9P5	Staphylococcus_phage	32.7	2.8e-15
