assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_010093065.1_ASM1009306v1	NZ_CP048113	Chitinophaga sp. H33E-04 chromosome, complete genome	1	1925313-1925411	1	CRISPRCasFinder	no		RT,cas3,PrimPol,DEDDh,csa3,PD-DExK,WYL	Orphan	TCCTTCTTCCAGGACTTCTCCTGT	24	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,PrimPol,DEDDh,csa3,PD-DExK,WYL	NA|51aa|up_8|NZ_CP048113.1_1912711_1912864_+,NA|58aa|up_7|NZ_CP048113.1_1912881_1913055_+,NA|191aa|up_4|NZ_CP048113.1_1916368_1916941_-,NA|170aa|down_0|NZ_CP048113.1_1926679_1927189_-,NA|105aa|down_2|NZ_CP048113.1_1927937_1928252_+,NA|322aa|down_6|NZ_CP048113.1_1933036_1934002_-	NA|155aa|up_9|NZ_CP048113.1_1912064_1912529_+	pfam17648, DUF5519, Family of unknown function (DUF5519)	NA|51aa|up_8|NZ_CP048113.1_1912711_1912864_+	NA	NA|58aa|up_7|NZ_CP048113.1_1912881_1913055_+	NA	NA|197aa|up_6|NZ_CP048113.1_1913944_1914535_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|530aa|up_5|NZ_CP048113.1_1914539_1916129_-	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|191aa|up_4|NZ_CP048113.1_1916368_1916941_-	NA	NA|837aa|up_3|NZ_CP048113.1_1917206_1919717_-	TIGR03396, PC_PLC, phospholipase C, phosphocholine-specific, Pseudomonas-type	NA|1072aa|up_2|NZ_CP048113.1_1919737_1922953_-	pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain	NA|321aa|up_1|NZ_CP048113.1_1923074_1924037_-	pfam04773, FecR, FecR protein	NA|199aa|up_0|NZ_CP048113.1_1924094_1924691_-	TIGR02985, Sig70_bacteroi1, RNA polymerase sigma-70 factor, Bacteroides expansion family 1	NA|170aa|down_0|NZ_CP048113.1_1926679_1927189_-	NA	NA|94aa|down_1|NZ_CP048113.1_1927435_1927717_+	cd12399, RRM_HP0827_like, RNA recognition motif in Helicobacter pylori HP0827 protein and similar proteins	NA|105aa|down_2|NZ_CP048113.1_1927937_1928252_+	NA	NA|499aa|down_3|NZ_CP048113.1_1928244_1929741_-	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|593aa|down_4|NZ_CP048113.1_1930061_1931840_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|301aa|down_5|NZ_CP048113.1_1931954_1932857_-	pfam07676, PD40, WD40-like Beta Propeller Repeat	NA|322aa|down_6|NZ_CP048113.1_1933036_1934002_-	NA	NA|264aa|down_7|NZ_CP048113.1_1934149_1934941_-	cd05330, cyclohexanol_reductase_SDR_c, cyclohexanol reductases, including levodione reductase, classical (c) SDRs	NA|281aa|down_8|NZ_CP048113.1_1935055_1935898_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|198aa|down_9|NZ_CP048113.1_1935945_1936539_-	COG4430, COG4430, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_010093065.1_ASM1009306v1	NZ_CP048113	Chitinophaga sp. H33E-04 chromosome, complete genome	2	3093828-3093954	2	CRISPRCasFinder	no		RT,cas3,PrimPol,DEDDh,csa3,PD-DExK,WYL	Orphan	CTGGAGCAGCAGTAGCAGTTGTATC	25	0	0	NA	NA	NA	2	2	Orphan	RT,cas3,PrimPol,DEDDh,csa3,PD-DExK,WYL	NA|188aa|up_3|NZ_CP048113.1_3089524_3090088_-,NA	NA|273aa|up_9|NZ_CP048113.1_3081233_3082052_+	PRK00865, PRK00865, glutamate racemase; Provisional	NA|711aa|up_8|NZ_CP048113.1_3082129_3084262_-	COG1770, PtrB, Protease II [Amino acid transport and metabolism]	NA|461aa|up_7|NZ_CP048113.1_3084301_3085684_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|255aa|up_6|NZ_CP048113.1_3085795_3086560_-	PRK07570, PRK07570, succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated	NA|658aa|up_5|NZ_CP048113.1_3086588_3088562_-	PRK07573, sdhA, fumarate reductase/succinate dehydrogenase flavoprotein subunit	NA|230aa|up_4|NZ_CP048113.1_3088581_3089271_-	cd03498, SQR_TypeB_2_TM, Succinate:quinone oxidoreductase (SQR)-like Type B subfamily 2, transmembrane subunit; composed of proteins with similarity to the SQRs of Geobacter metallireducens and Corynebacterium glutamicum	NA|188aa|up_3|NZ_CP048113.1_3089524_3090088_-	NA	NA|271aa|up_2|NZ_CP048113.1_3090176_3090989_-	PRK05441, murQ, N-acetylmuramic acid-6-phosphate etherase; Reviewed	NA|281aa|up_1|NZ_CP048113.1_3091004_3091847_-	COG2971, COG2971, Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]	NA|536aa|up_0|NZ_CP048113.1_3091946_3093554_+	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|442aa|down_0|NZ_CP048113.1_3094113_3095439_-	PRK00093, PRK00093, GTP-binding protein Der; Reviewed	NA|290aa|down_1|NZ_CP048113.1_3095451_3096321_-	PRK00089, era, GTPase Era; Reviewed	NA|131aa|down_2|NZ_CP048113.1_3097499_3097892_-	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB)	NA|792aa|down_3|NZ_CP048113.1_3098244_3100620_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|444aa|down_4|NZ_CP048113.1_3100686_3102018_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|355aa|down_5|NZ_CP048113.1_3102021_3103086_-	cd05651, M20_ArgE_DapE-like, M20 peptidases with similarity to acetylornithine deacetylases and succinyl-diaminopimelate desuccinylases	NA|263aa|down_6|NZ_CP048113.1_3103090_3103879_-	cd04238, AAK_NAGK-like, AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like 	NA|320aa|down_7|NZ_CP048113.1_3103875_3104835_-	PRK04523, PRK04523, N-acetylornithine carbamoyltransferase; Reviewed	NA|377aa|down_8|NZ_CP048113.1_3104863_3105994_-	COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]	NA|328aa|down_9|NZ_CP048113.1_3106061_3107045_-	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated
GCF_010093065.1_ASM1009306v1	NZ_CP048113	Chitinophaga sp. H33E-04 chromosome, complete genome	3	5854849-5854953	3	CRISPRCasFinder	no		RT,cas3,PrimPol,DEDDh,csa3,PD-DExK,WYL	Orphan	CCTGCTACACCGGGGTCACCCTGT	24	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,PrimPol,DEDDh,csa3,PD-DExK,WYL	NA|166aa|up_4|NZ_CP048113.1_5848320_5848818_-,NA|97aa|up_2|NZ_CP048113.1_5850695_5850986_+,NA|167aa|down_0|NZ_CP048113.1_5855718_5856219_-,NA|391aa|down_1|NZ_CP048113.1_5856252_5857425_-	NA|143aa|up_9|NZ_CP048113.1_5843342_5843771_-	pfam13899, Thioredoxin_7, Thioredoxin-like	NA|855aa|up_8|NZ_CP048113.1_5843832_5846397_-	COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]	NA|193aa|up_7|NZ_CP048113.1_5846583_5847162_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|143aa|up_6|NZ_CP048113.1_5847207_5847636_-	pfam13279, 4HBT_2, Thioesterase-like superfamily	NA|199aa|up_5|NZ_CP048113.1_5847688_5848285_-	PRK14823, PRK14823, putative deoxyribonucleoside-triphosphatase; Provisional	NA|166aa|up_4|NZ_CP048113.1_5848320_5848818_-	NA	NA|370aa|up_3|NZ_CP048113.1_5849013_5850123_+	PRK13357, PRK13357, branched-chain amino acid aminotransferase; Provisional	NA|97aa|up_2|NZ_CP048113.1_5850695_5850986_+	NA	NA|127aa|up_1|NZ_CP048113.1_5851117_5851498_+	PRK05163, rpsL, 30S ribosomal protein S12; Validated	NA|156aa|up_0|NZ_CP048113.1_5851531_5851999_+	PRK05302, PRK05302, 30S ribosomal protein S7; Validated	NA|167aa|down_0|NZ_CP048113.1_5855718_5856219_-	NA	NA|391aa|down_1|NZ_CP048113.1_5856252_5857425_-	NA	NA|168aa|down_2|NZ_CP048113.1_5857441_5857945_-	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain	NA|717aa|down_3|NZ_CP048113.1_5858332_5860483_+	PRK12739, PRK12739, elongation factor G; Reviewed	NA|200aa|down_4|NZ_CP048113.1_5860982_5861582_+	pfam13505, OMP_b-brl, Outer membrane protein beta-barrel domain	NA|102aa|down_5|NZ_CP048113.1_5863320_5863626_+	PRK00596, rpsJ, 30S ribosomal protein S10; Reviewed	NA|206aa|down_6|NZ_CP048113.1_5863841_5864459_+	PRK00001, rplC, 50S ribosomal protein L3; Validated	NA|212aa|down_7|NZ_CP048113.1_5864460_5865096_+	PRK05319, rplD, 50S ribosomal protein L4; Provisional	NA|100aa|down_8|NZ_CP048113.1_5865153_5865453_+	PRK05738, rplW, 50S ribosomal protein L23; Reviewed	NA|278aa|down_9|NZ_CP048113.1_5865536_5866370_+	PRK09374, rplB, 50S ribosomal protein L2; Validated
GCF_010093065.1_ASM1009306v1	NZ_CP048113	Chitinophaga sp. H33E-04 chromosome, complete genome	4	5906257-5906385	4,1	CRISPRCasFinder,PILER-CR	no		RT,cas3,PrimPol,DEDDh,csa3,PD-DExK,WYL	Orphan	TCCGGCCTATGAAAGCCAATTTA,TCCGGCCTATGAAAGCCAATTTA	23,23	0	0	NA	NA	NA:NA	2,2	2	Orphan	RT,cas3,PrimPol,DEDDh,csa3,PD-DExK,WYL	NA|272aa|up_2|NZ_CP048113.1_5900021_5900837_-,NA|128aa|down_4|NZ_CP048113.1_5911985_5912369_-	NA|413aa|up_9|NZ_CP048113.1_5893492_5894731_+	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|154aa|up_8|NZ_CP048113.1_5894786_5895248_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|314aa|up_7|NZ_CP048113.1_5895500_5896442_-	cd01339, LDH-like_MDH, L-lactate dehydrogenase-like malate dehydrogenase proteins	NA|170aa|up_6|NZ_CP048113.1_5896524_5897034_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|189aa|up_5|NZ_CP048113.1_5897398_5897965_+	PRK00529, PRK00529, elongation factor P; Validated	NA|160aa|up_4|NZ_CP048113.1_5898019_5898499_+	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein	NA|446aa|up_3|NZ_CP048113.1_5898609_5899947_+	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated	NA|272aa|up_2|NZ_CP048113.1_5900021_5900837_-	NA	NA|733aa|up_1|NZ_CP048113.1_5901012_5903211_-	COG3968, COG3968, Uncharacterized protein related to glutamine synthetase [General function prediction only]	NA|751aa|up_0|NZ_CP048113.1_5903573_5905826_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|414aa|down_0|NZ_CP048113.1_5907190_5908432_-	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|569aa|down_1|NZ_CP048113.1_5908537_5910244_+	cd16016, AP-SPAP, SPAP is a subclass of alkaline phosphatase (AP)	NA|260aa|down_2|NZ_CP048113.1_5910340_5911120_+	PRK05995, PRK05995, enoyl-CoA hydratase; Provisional	NA|221aa|down_3|NZ_CP048113.1_5911231_5911894_+	TIGR01200, conserved_hypothetical_protein, GLPGLI family protein	NA|128aa|down_4|NZ_CP048113.1_5911985_5912369_-	NA	NA|477aa|down_5|NZ_CP048113.1_5912521_5913952_+	sd00006, TPR, Tetratricopeptide repeat	NA|255aa|down_6|NZ_CP048113.1_5914231_5914996_+	pfam02679, ComA, (2R)-phospho-3-sulfolactate synthase (ComA)	NA|245aa|down_7|NZ_CP048113.1_5915006_5915741_+	COG0169, AroE, Shikimate 5-dehydrogenase [Amino acid transport and metabolism]	NA|266aa|down_8|NZ_CP048113.1_5916075_5916873_-	pfam08242, Methyltransf_12, Methyltransferase domain	NA|234aa|down_9|NZ_CP048113.1_5916975_5917677_+	cd02573, PseudoU_synth_EcTruB, Pseudouridine synthase, Escherichia coli TruB like
GCF_010093065.1_ASM1009306v1	NZ_CP048113	Chitinophaga sp. H33E-04 chromosome, complete genome	5	5984998-5985132	5	CRISPRCasFinder	no		RT,cas3,PrimPol,DEDDh,csa3,PD-DExK,WYL	Orphan	AACTACAGCCAGTTGTCACTCCTGCAGCCGTTGCCAGAAGATC	43	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,PrimPol,DEDDh,csa3,PD-DExK,WYL	NA|242aa|up_8|NZ_CP048113.1_5973050_5973776_+,NA|311aa|down_0|NZ_CP048113.1_5985169_5986102_-	NA|132aa|up_9|NZ_CP048113.1_5972619_5973015_+	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism]	NA|242aa|up_8|NZ_CP048113.1_5973050_5973776_+	NA	NA|337aa|up_7|NZ_CP048113.1_5973833_5974844_-	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|222aa|up_6|NZ_CP048113.1_5974947_5975613_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|270aa|up_5|NZ_CP048113.1_5975788_5976598_-	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]	NA|486aa|up_4|NZ_CP048113.1_5976630_5978088_-	cd05245, SDR_a2, atypical (a) SDRs, subgroup 2	NA|233aa|up_3|NZ_CP048113.1_5978223_5978922_+	cd07515, HAD-like, uncharacterized family of the haloacid dehalogenase-like (HAD) hydrolase superfamily	NA|676aa|up_2|NZ_CP048113.1_5979093_5981121_+	pfam07944, Glyco_hydro_127, Beta-L-arabinofuranosidase, GH127	NA|775aa|up_1|NZ_CP048113.1_5981137_5983462_+	pfam17389, Bac_rhamnosid6H, Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain	NA|112aa|up_0|NZ_CP048113.1_5983711_5984047_-	cd06529, S24_LexA-like, Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell	NA|311aa|down_0|NZ_CP048113.1_5985169_5986102_-	NA	NA|212aa|down_1|NZ_CP048113.1_5986139_5986775_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|688aa|down_2|NZ_CP048113.1_5986749_5988813_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|1137aa|down_3|NZ_CP048113.1_5989253_5992664_+	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family	NA|483aa|down_4|NZ_CP048113.1_5992675_5994124_+	cd08977, SusD, starch binding outer membrane protein SusD	NA|304aa|down_5|NZ_CP048113.1_5994154_5995066_+	TIGR04549, LP_HExxH_w_tonB, substrate import-associated zinc metallohydrolase lipoprotein	NA|435aa|down_6|NZ_CP048113.1_5995113_5996418_+	pfam14135, DUF4302, Domain of unknown function (DUF4302)	NA|2974aa|down_7|NZ_CP048113.1_5996442_6005364_+	pfam17517, IgGFc_binding, IgGFc binding protein	NA|1376aa|down_8|NZ_CP048113.1_6005366_6009494_+	pfam17517, IgGFc_binding, IgGFc binding protein	NA|336aa|down_9|NZ_CP048113.1_6009543_6010551_+	TIGR03519, bacteroidetes-specific_membrane_protein, type IX secretion system membrane protein, PorP/SprF family
GCF_010093065.1_ASM1009306v1	NZ_CP048113	Chitinophaga sp. H33E-04 chromosome, complete genome	6	7250572-7250724	6	CRISPRCasFinder	no		RT,cas3,PrimPol,DEDDh,csa3,PD-DExK,WYL	Orphan	GCCAGCCAGTCCATCTGACAGTTCGGTATCATCACGGCTATTGCTACGTCAGCC	54	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,PrimPol,DEDDh,csa3,PD-DExK,WYL	NA|606aa|up_9|NZ_CP048113.1_7233225_7235043_-,NA|332aa|up_6|NZ_CP048113.1_7236473_7237469_-,NA|69aa|down_9|NZ_CP048113.1_7262813_7263020_+	NA|606aa|up_9|NZ_CP048113.1_7233225_7235043_-	NA	NA|265aa|up_8|NZ_CP048113.1_7235245_7236040_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|130aa|up_7|NZ_CP048113.1_7236042_7236432_-	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|332aa|up_6|NZ_CP048113.1_7236473_7237469_-	NA	NA|1056aa|up_5|NZ_CP048113.1_7237793_7240961_+	pfam14200, RicinB_lectin_2, Ricin-type beta-trefoil lectin domain-like	NA|481aa|up_4|NZ_CP048113.1_7241463_7242906_+	TIGR00909, putative_amino_acid_transporter, amino acid transporter	NA|1077aa|up_3|NZ_CP048113.1_7243007_7246238_+	cd07562, Peptidase_S41_TRI, Tricorn protease; serine protease family S41	NA|282aa|up_2|NZ_CP048113.1_7246459_7247305_-	pfam14362, DUF4407, Domain of unknown function (DUF4407)	NA|568aa|up_1|NZ_CP048113.1_7247528_7249232_-	cd07341, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|134aa|up_0|NZ_CP048113.1_7249246_7249648_-	pfam03965, Penicillinase_R, Penicillinase repressor	NA|129aa|down_0|NZ_CP048113.1_7250847_7251234_-	cd07247, SgaA_N_like, N-terminal domain of Streptomyces griseus SgaA and similar domains	NA|333aa|down_1|NZ_CP048113.1_7251359_7252358_+	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]	NA|445aa|down_2|NZ_CP048113.1_7252456_7253791_+	TIGR00908, putative_ethanolamine_permease, ethanolamine permease	NA|459aa|down_3|NZ_CP048113.1_7253806_7255183_+	PRK15067, PRK15067, ethanolamine ammonia-lyase subunit EutB	NA|261aa|down_4|NZ_CP048113.1_7255179_7255962_+	pfam05985, EutC, Ethanolamine ammonia-lyase light chain (EutC)	NA|193aa|down_5|NZ_CP048113.1_7256019_7256598_+	TIGR02985, Sig70_bacteroi1, RNA polymerase sigma-70 factor, Bacteroides expansion family 1	NA|305aa|down_6|NZ_CP048113.1_7256643_7257558_+	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms]	NA|1067aa|down_7|NZ_CP048113.1_7257577_7260778_+	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family	NA|510aa|down_8|NZ_CP048113.1_7260787_7262317_+	pfam12771, SusD-like_2, Starch-binding associating with outer membrane	NA|69aa|down_9|NZ_CP048113.1_7262813_7263020_+	NA
