assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_010365325.1_ASM1036532v1	NZ_CP048306	Escherichia coli strain 9 plasmid p009_B, complete sequence	1	1373-1627	1	PILER-CR	no		DEDDh	Orphan	GTATGCTGTCAGCGGT	16	0	0	NA	NA	NA	3	3	Orphan	WYL,cas3,c2c9_V-U4,csa3,DEDDh,DinG,cas14j	NA,NA|71aa|down_0|NZ_CP048306.1_1674_1887_-,NA|112aa|down_1|NZ_CP048306.1_1886_2222_-,NA|92aa|down_2|NZ_CP048306.1_2437_2713_-,NA|130aa|down_4|NZ_CP048306.1_3257_3647_-,NA|247aa|down_5|NZ_CP048306.1_3667_4408_-	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|71aa|down_0|NZ_CP048306.1_1674_1887_-	NA	NA|112aa|down_1|NZ_CP048306.1_1886_2222_-	NA	NA|92aa|down_2|NZ_CP048306.1_2437_2713_-	NA	NA|142aa|down_3|NZ_CP048306.1_2768_3194_-	PHA02053, PHA02053, hypothetical protein	NA|130aa|down_4|NZ_CP048306.1_3257_3647_-	NA	NA|247aa|down_5|NZ_CP048306.1_3667_4408_-	NA	NA|275aa|down_6|NZ_CP048306.1_4453_5278_-	pfam18406, DUF1281_C, Ferredoxin-like domain in Api92-like protein	NA|277aa|down_7|NZ_CP048306.1_5373_6204_-	pfam01145, Band_7, SPFH domain / Band 7 family	NA|67aa|down_8|NZ_CP048306.1_6207_6408_-	PRK02155, ppnK, NAD kinase	NA|343aa|down_9|NZ_CP048306.1_6500_7529_-	COG0468, RecA, RecA/RadA recombinase [DNA replication, recombination, and repair]
GCF_010365325.1_ASM1036532v1	NZ_CP048304	Escherichia coli strain 9 chromosome, complete genome	1	2047411-2047524	1	CRISPRCasFinder	no		WYL,cas3,c2c9_V-U4,csa3,DEDDh,DinG,cas14j	Orphan	TGCCGGATGCGCTTCGCTTATCCGGCCTACAAA	33	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,c2c9_V-U4,csa3,DEDDh,DinG,cas14j	NA,NA	NA|268aa|up_9|NZ_CP048304.1_2036355_2037159_+	PRK10128, PRK10128, 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional	NA|309aa|up_8|NZ_CP048304.1_2037199_2038126_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_CP048304.1_2038318_2039509_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_CP048304.1_2039505_2040765_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_CP048304.1_2040754_2042383_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_CP048304.1_2042655_2044014_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_CP048304.1_2044018_2045095_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_CP048304.1_2045297_2045948_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP048304.1_2046001_2046256_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP048304.1_2046255_2047386_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP048304.1_2047575_2049861_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1253aa|down_1|NZ_CP048304.1_2050542_2054301_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP048304.1_2054440_2055163_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP048304.1_2055309_2057937_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP048304.1_2058085_2059774_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP048304.1_2059770_2060394_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|NZ_CP048304.1_2060537_2064932_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|NZ_CP048304.1_2064932_2066582_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|NZ_CP048304.1_2066586_2067363_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|NZ_CP048304.1_2067436_2068621_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCF_010365325.1_ASM1036532v1	NZ_CP048304	Escherichia coli strain 9 chromosome, complete genome	2	2787029-2787152	2	CRISPRCasFinder	no	DEDDh	WYL,cas3,c2c9_V-U4,csa3,DEDDh,DinG,cas14j	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,c2c9_V-U4,csa3,DEDDh,DinG,cas14j	NA,NA|30aa|down_7|NZ_CP048304.1_2796036_2796126_+	NA|471aa|up_9|NZ_CP048304.1_2776480_2777893_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP048304.1_2778450_2778660_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP048304.1_2779115_2779742_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP048304.1_2779762_2781865_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP048304.1_2781877_2782516_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP048304.1_2782579_2783248_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP048304.1_2783244_2784030_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP048304.1_2784033_2784846_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|537aa|up_1|NZ_CP048304.1_2784851_2786462_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP048304.1_2786587_2786893_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP048304.1_2787466_2788723_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP048304.1_2788763_2790137_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP048304.1_2790351_2790993_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP048304.1_2791032_2792181_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP048304.1_2792471_2793683_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|307aa|down_5|NZ_CP048304.1_2793795_2794716_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP048304.1_2794712_2795738_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP048304.1_2796036_2796126_+	NA	NA|390aa|down_8|NZ_CP048304.1_2796291_2797461_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP048304.1_2797606_2798188_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_010365325.1_ASM1036532v1	NZ_CP048304	Escherichia coli strain 9 chromosome, complete genome	3	3463500-3463591	3	CRISPRCasFinder	no		WYL,cas3,c2c9_V-U4,csa3,DEDDh,DinG,cas14j	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,c2c9_V-U4,csa3,DEDDh,DinG,cas14j	NA|70aa|up_9|NZ_CP048304.1_3452750_3452960_-,NA	NA|70aa|up_9|NZ_CP048304.1_3452750_3452960_-	NA	NA|1321aa|up_8|NZ_CP048304.1_3453014_3456977_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP048304.1_3457016_3457655_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP048304.1_3457942_3459034_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP048304.1_3459033_3459726_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP048304.1_3459737_3460124_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP048304.1_3460131_3460932_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP048304.1_3460941_3461532_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP048304.1_3461542_3462037_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP048304.1_3462057_3463386_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP048304.1_3464014_3464611_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP048304.1_3464631_3464859_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP048304.1_3464896_3466138_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|307aa|down_3|NZ_CP048304.1_3466672_3467593_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_4|NZ_CP048304.1_3467592_3467898_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_5|NZ_CP048304.1_3468152_3468752_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_6|NZ_CP048304.1_3468748_3471295_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_7|NZ_CP048304.1_3471294_3472467_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_8|NZ_CP048304.1_3472596_3473289_+	PRK10766, PRK10766, two-component system response regulator TorR	NA|343aa|down_9|NZ_CP048304.1_3473261_3474290_-	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional
GCF_010365325.1_ASM1036532v1	NZ_CP048304	Escherichia coli strain 9 chromosome, complete genome	4	4852818-4852957	4	CRISPRCasFinder	no		WYL,cas3,c2c9_V-U4,csa3,DEDDh,DinG,cas14j	Orphan	TGTTATTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACACA	44	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,c2c9_V-U4,csa3,DEDDh,DinG,cas14j	NA,NA	NA|340aa|up_9|NZ_CP048304.1_4841028_4842048_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|188aa|up_8|NZ_CP048304.1_4842051_4842615_-	PRK09825, idnK, gluconokinase	NA|344aa|up_7|NZ_CP048304.1_4842831_4843863_+	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|255aa|up_6|NZ_CP048304.1_4843886_4844651_+	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|440aa|up_5|NZ_CP048304.1_4844715_4846035_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|333aa|up_4|NZ_CP048304.1_4846101_4847100_+	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|501aa|up_3|NZ_CP048304.1_4847177_4848680_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|NZ_CP048304.1_4848840_4849923_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP048304.1_4849922_4851023_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP048304.1_4851289_4852801_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP048304.1_4853058_4853502_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP048304.1_4853501_4856357_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|396aa|down_2|NZ_CP048304.1_4856403_4857591_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|NZ_CP048304.1_4857783_4858287_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_4|NZ_CP048304.1_4858464_4858881_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_5|NZ_CP048304.1_4859042_4860047_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|151aa|down_6|NZ_CP048304.1_4860091_4860544_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|407aa|down_7|NZ_CP048304.1_4861221_4862442_+	PRK01388, PRK01388, arginine deiminase; Provisional	NA|311aa|down_8|NZ_CP048304.1_4862452_4863385_+	PRK12354, PRK12354, carbamate kinase; Reviewed	NA|335aa|down_9|NZ_CP048304.1_4863408_4864413_+	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated
