assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_010365405.1_ASM1036540v1	NZ_CP048326	Escherichia coli strain 61 chromosome, complete genome	1	3123953-3124079	1	CRISPRCasFinder	no		cas3,csa3,PD-DExK,DinG,c2c9_V-U4,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,TnsE_C	Orphan	TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC	39	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,DinG,c2c9_V-U4,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,TnsE_C	NA,NA	NA|395aa|up_9|NZ_CP048326.1_3102878_3104063_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|259aa|up_8|NZ_CP048326.1_3104136_3104913_-	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|up_7|NZ_CP048326.1_3104917_3106567_-	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|1465aa|up_6|NZ_CP048326.1_3106567_3110962_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|208aa|up_5|NZ_CP048326.1_3111105_3111729_-	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|563aa|up_4|NZ_CP048326.1_3111725_3113414_-	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|876aa|up_3|NZ_CP048326.1_3113562_3116190_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|241aa|up_2|NZ_CP048326.1_3116336_3117059_+	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|1245aa|up_1|NZ_CP048326.1_3117186_3120921_-	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|762aa|up_0|NZ_CP048326.1_3121616_3123902_+	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|377aa|down_0|NZ_CP048326.1_3124135_3125266_+	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|85aa|down_1|NZ_CP048326.1_3125265_3125520_+	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|217aa|down_2|NZ_CP048326.1_3125573_3126224_-	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|359aa|down_3|NZ_CP048326.1_3126686_3127763_-	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|543aa|down_4|NZ_CP048326.1_3129398_3131027_+	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|420aa|down_5|NZ_CP048326.1_3131016_3132276_+	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_6|NZ_CP048326.1_3132272_3133463_+	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|301aa|down_7|NZ_CP048326.1_3133656_3134559_+	PRK09956, PRK09956, ISNCY family transposase	NA|157aa|down_8|NZ_CP048326.1_3134599_3135070_-	PRK10128, PRK10128, 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional	NA|401aa|down_9|NZ_CP048326.1_3135124_3136327_-	PRK03673, PRK03673, nicotinamide mononucleotide deamidase-related protein YfaY
GCF_010365405.1_ASM1036540v1	NZ_CP048326	Escherichia coli strain 61 chromosome, complete genome	2	3622249-3623254	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,csa3,PD-DExK,DinG,c2c9_V-U4,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,TnsE_C	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	16,16,16	16	TypeI-E	cas3,csa3,PD-DExK,DinG,c2c9_V-U4,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,TnsE_C	NA,NA	NA|254aa|up_9|NZ_CP048326.1_3614061_3614823_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP048326.1_3614803_3615853_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP048326.1_3615849_3616329_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP048326.1_3616328_3617039_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP048326.1_3617057_3617369_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP048326.1_3617562_3617886_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP048326.1_3617935_3618541_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP048326.1_3618540_3619968_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP048326.1_3619969_3620878_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP048326.1_3621129_3622167_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP048326.1_3623350_3623644_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP048326.1_3623643_3624564_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP048326.1_3624560_3625211_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP048326.1_3625192_3625939_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP048326.1_3625949_3627005_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NZ_CP048326.1_3627016_3627553_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|521aa|down_6|NZ_CP048326.1_3627549_3629112_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP048326.1_3629209_3631909_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP048326.1_3632102_3632255_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP048326.1_3632519_3633254_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_010365405.1_ASM1036540v1	NZ_CP048326	Escherichia coli strain 61 chromosome, complete genome	3	3638753-3639696	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,csa3,PD-DExK,DinG,c2c9_V-U4,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,TnsE_C	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	15,15,15	15	TypeI-E	cas3,csa3,PD-DExK,DinG,c2c9_V-U4,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,TnsE_C	NA,NA|121aa|down_3|NZ_CP048326.1_3642436_3642799_+	cas5|249aa|up_9|NZ_CP048326.1_3625192_3625939_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|up_8|NZ_CP048326.1_3625949_3627005_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|up_7|NZ_CP048326.1_3627016_3627553_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|521aa|up_6|NZ_CP048326.1_3627549_3629112_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|up_5|NZ_CP048326.1_3629209_3631909_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|up_4|NZ_CP048326.1_3632102_3632255_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|up_3|NZ_CP048326.1_3632519_3633254_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_2|NZ_CP048326.1_3633327_3635040_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_1|NZ_CP048326.1_3635039_3636839_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|122aa|up_0|NZ_CP048326.1_3637154_3637520_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|224aa|down_0|NZ_CP048326.1_3640035_3640707_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|201aa|down_1|NZ_CP048326.1_3640879_3641482_+	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|302aa|down_2|NZ_CP048326.1_3641495_3642401_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|121aa|down_3|NZ_CP048326.1_3642436_3642799_+	NA	NA|433aa|down_4|NZ_CP048326.1_3642854_3644153_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_5|NZ_CP048326.1_3644240_3645878_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_6|NZ_CP048326.1_3646105_3646897_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_7|NZ_CP048326.1_3646967_3647303_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_8|NZ_CP048326.1_3647302_3647551_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_9|NZ_CP048326.1_3647628_3649863_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
GCF_010365405.1_ASM1036540v1	NZ_CP048326	Escherichia coli strain 61 chromosome, complete genome	4	3963223-3963355	3	PILER-CR	no		cas3,csa3,PD-DExK,DinG,c2c9_V-U4,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,TnsE_C	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,PD-DExK,DinG,c2c9_V-U4,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,TnsE_C	NA,NA	NA|126aa|up_9|NZ_CP048326.1_3953926_3954304_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|281aa|up_8|NZ_CP048326.1_3954310_3955153_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|160aa|up_7|NZ_CP048326.1_3955230_3955710_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP048326.1_3955902_3957765_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP048326.1_3957757_3958288_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP048326.1_3958395_3959727_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP048326.1_3959784_3960072_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP048326.1_3960068_3961355_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP048326.1_3961405_3962347_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP048326.1_3962361_3963132_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP048326.1_3963605_3965120_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP048326.1_3965150_3966293_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP048326.1_3966421_3967639_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP048326.1_3967712_3969266_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP048326.1_3969374_3970160_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP048326.1_3970165_3970756_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP048326.1_3970841_3971237_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_7|NZ_CP048326.1_3971497_3974719_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP048326.1_3974736_3975885_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP048326.1_3976340_3977162_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
GCF_010365405.1_ASM1036540v1	NZ_CP048326	Escherichia coli strain 61 chromosome, complete genome	5	4153860-4154009	4	CRISPRCasFinder	no		cas3,csa3,PD-DExK,DinG,c2c9_V-U4,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,TnsE_C	Orphan	TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	54	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,DinG,c2c9_V-U4,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,TnsE_C	NA,NA	NA|289aa|up_9|NZ_CP048326.1_4142250_4143117_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|100aa|up_8|NZ_CP048326.1_4143113_4143413_-	pfam01527, HTH_Tnp_1, Transposase	NA|73aa|up_7|NZ_CP048326.1_4143479_4143698_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|130aa|up_6|NZ_CP048326.1_4143748_4144138_-	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|405aa|up_5|NZ_CP048326.1_4144216_4145430_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|340aa|up_4|NZ_CP048326.1_4147052_4148072_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|501aa|up_3|NZ_CP048326.1_4148199_4149702_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|NZ_CP048326.1_4149862_4150945_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP048326.1_4150944_4152045_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP048326.1_4152311_4153823_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP048326.1_4154176_4154620_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP048326.1_4154619_4157475_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|399aa|down_2|NZ_CP048326.1_4157530_4158727_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|NZ_CP048326.1_4158919_4159423_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_4|NZ_CP048326.1_4159468_4159885_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|338aa|down_5|NZ_CP048326.1_4160046_4161060_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|151aa|down_6|NZ_CP048326.1_4162913_4163366_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|198aa|down_7|NZ_CP048326.1_4163510_4164104_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|238aa|down_8|NZ_CP048326.1_4164174_4164888_+	PRK12742, PRK12742, SDR family oxidoreductase	NA|132aa|down_9|NZ_CP048326.1_4165018_4165414_+	cd02198, YjgH_like, YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
