assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_010365485.1_ASM1036548v1	NZ_CP048359	Escherichia coli strain 53 chromosome, complete genome	1	628703-628954	1	PILER-CR	no		cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL,TnsE_C	Orphan	TTTTGGAGGAGCAGAAAGATGAATGACTGTCCACGACGCTATACCCAAAAGAAA	54	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL,TnsE_C	NA,NA|180aa|down_1|NZ_CP048359.1_630461_631001_-	NA|158aa|up_9|NZ_CP048359.1_618277_618751_-	PRK11425, PRK11425, PTS N-acetylgalactosamine transporter subunit IIB	NA|427aa|up_8|NZ_CP048359.1_618773_620054_-	PRK15458, PRK15458, tagatose 6-phosphate aldolase subunit KbaZ; Provisional	NA|270aa|up_7|NZ_CP048359.1_620302_621112_+	PRK09802, PRK09802, DeoR family transcriptional regulator	NA|155aa|up_6|NZ_CP048359.1_621166_621631_-	pfam11663, Toxin_YhaV, Toxin with endonuclease activity, of toxin-antitoxin system	NA|112aa|up_5|NZ_CP048359.1_621630_621966_-	PRK09974, PRK09974, type II toxin-antitoxin system PrlF family antitoxin	NA|524aa|up_4|NZ_CP048359.1_622114_623686_-	TIGR03248, galactar-dH20, galactarate dehydratase	NA|445aa|up_3|NZ_CP048359.1_624060_625395_+	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter	NA|257aa|up_2|NZ_CP048359.1_625410_626181_+	PRK10558, PRK10558, alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional	NA|297aa|up_1|NZ_CP048359.1_626210_627101_+	PRK11559, garR, tartronate semialdehyde reductase; Provisional	NA|382aa|up_0|NZ_CP048359.1_627197_628343_+	PRK10342, PRK10342, glycerate kinase I; Provisional	NA|396aa|down_0|NZ_CP048359.1_629252_630440_-	PRK09716, PRK09716, YhaC family protein	NA|180aa|down_1|NZ_CP048359.1_630461_631001_-	NA	NA|115aa|down_2|NZ_CP048359.1_631256_631601_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|down_3|NZ_CP048359.1_631789_632728_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|down_4|NZ_CP048359.1_632826_633816_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|down_5|NZ_CP048359.1_633837_635169_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|down_6|NZ_CP048359.1_635194_636403_+	PRK12379, PRK12379, propionate kinase	NA|765aa|down_7|NZ_CP048359.1_636436_638731_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|down_8|NZ_CP048359.1_638744_639134_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|down_9|NZ_CP048359.1_639205_640570_+	PRK15040, PRK15040, L-serine ammonia-lyase
GCF_010365485.1_ASM1036548v1	NZ_CP048359	Escherichia coli strain 53 chromosome, complete genome	2	643535-643652	1	CRISPRCasFinder	no		cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL,TnsE_C	Orphan	TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	40	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL,TnsE_C	NA,NA|55aa|down_0|NZ_CP048359.1_643725_643890_-	NA|115aa|up_9|NZ_CP048359.1_631256_631601_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|up_8|NZ_CP048359.1_631789_632728_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|up_7|NZ_CP048359.1_632826_633816_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|up_6|NZ_CP048359.1_633837_635169_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|up_5|NZ_CP048359.1_635194_636403_+	PRK12379, PRK12379, propionate kinase	NA|765aa|up_4|NZ_CP048359.1_636436_638731_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|up_3|NZ_CP048359.1_638744_639134_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|up_2|NZ_CP048359.1_639205_640570_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|up_1|NZ_CP048359.1_640844_642176_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|up_0|NZ_CP048359.1_642203_643514_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_0|NZ_CP048359.1_643725_643890_-	NA	NA|234aa|down_1|NZ_CP048359.1_643912_644614_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|299aa|down_2|NZ_CP048359.1_644718_645615_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|119aa|down_3|NZ_CP048359.1_645665_646022_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|122aa|down_4|NZ_CP048359.1_646263_646629_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|329aa|down_5|NZ_CP048359.1_646921_647908_-	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|161aa|down_6|NZ_CP048359.1_647977_648460_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|100aa|down_7|NZ_CP048359.1_648555_648855_-	pfam13997, YqjK, YqjK-like protein	NA|135aa|down_8|NZ_CP048359.1_648844_649249_-	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|102aa|down_9|NZ_CP048359.1_649251_649557_-	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]
GCF_010365485.1_ASM1036548v1	NZ_CP048359	Escherichia coli strain 53 chromosome, complete genome	3	1035561-1036321	2,2,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL,TnsE_C	Orphan	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	12,12,12	12	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL,TnsE_C	NA|47aa|up_1|NZ_CP048359.1_1034270_1034411_-,NA	NA|919aa|up_9|NZ_CP048359.1_1022154_1024911_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|NZ_CP048359.1_1024967_1026269_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|NZ_CP048359.1_1026316_1028551_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|NZ_CP048359.1_1028628_1028877_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_5|NZ_CP048359.1_1028876_1029212_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_4|NZ_CP048359.1_1029282_1030074_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|NZ_CP048359.1_1030301_1031939_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|NZ_CP048359.1_1032026_1033325_+	PRK00077, eno, enolase; Provisional	NA|47aa|up_1|NZ_CP048359.1_1034270_1034411_-	NA	NA|224aa|up_0|NZ_CP048359.1_1034549_1035221_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|274aa|down_0|NZ_CP048359.1_1036611_1037433_-	pfam00665, rve, Integrase core domain	NA|105aa|down_1|NZ_CP048359.1_1037429_1037744_-	pfam06627, DUF1153, Protein of unknown function (DUF1153)	NA|493aa|down_2|NZ_CP048359.1_1038176_1039655_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_3|NZ_CP048359.1_1039681_1040959_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_4|NZ_CP048359.1_1041277_1042063_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_5|NZ_CP048359.1_1042132_1043587_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_6|NZ_CP048359.1_1043608_1045018_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_7|NZ_CP048359.1_1044995_1045775_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|298aa|down_8|NZ_CP048359.1_1045738_1046632_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_9|NZ_CP048359.1_1046779_1047355_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
GCF_010365485.1_ASM1036548v1	NZ_CP048359	Escherichia coli strain 53 chromosome, complete genome	4	1064588-1064982	3,2,3	PILER-CR,CRT,CRISPRCasFinder	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL,TnsE_C	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTTCCCCGCGCCAGCGGGGATAAACCG	29,29,27	0	0	NA	NA	I-E:I-E:I-E	5,6,5	6	TypeI-E	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL,TnsE_C	NA,NA	NA|51aa|up_9|NZ_CP048359.1_1054236_1054389_+	pfam01848, HOK_GEF, Hok/gef family	NA|371aa|up_8|NZ_CP048359.1_1054581_1055694_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	cas3|900aa|up_7|NZ_CP048359.1_1055932_1058632_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_CP048359.1_1058729_1060292_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|NZ_CP048359.1_1060288_1060825_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|352aa|up_4|NZ_CP048359.1_1060836_1061892_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP048359.1_1061902_1062649_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP048359.1_1062630_1063281_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|NZ_CP048359.1_1063277_1064201_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP048359.1_1064197_1064491_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP048359.1_1065002_1066040_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP048359.1_1066291_1067200_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP048359.1_1067201_1068629_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP048359.1_1068628_1069234_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP048359.1_1069283_1069607_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP048359.1_1069800_1070112_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP048359.1_1070130_1070841_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP048359.1_1070840_1071320_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP048359.1_1071316_1072366_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP048359.1_1072346_1073108_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_010365485.1_ASM1036548v1	NZ_CP048359	Escherichia coli strain 53 chromosome, complete genome	5	2213484-2213607	4	CRISPRCasFinder	no	DEDDh	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL,TnsE_C	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL,TnsE_C	NA,NA|30aa|down_7|NZ_CP048359.1_2222503_2222593_+	NA|79aa|up_9|NZ_CP048359.1_2202380_2202617_-	PRK15396, PRK15396, major outer membrane lipoprotein	NA|471aa|up_8|NZ_CP048359.1_2202927_2204340_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_7|NZ_CP048359.1_2204906_2205116_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_6|NZ_CP048359.1_2205571_2206198_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_5|NZ_CP048359.1_2206218_2208321_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|223aa|up_4|NZ_CP048359.1_2209035_2209704_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP048359.1_2209700_2210486_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP048359.1_2210489_2211302_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP048359.1_2211313_2212918_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP048359.1_2213043_2213349_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP048359.1_2213921_2215178_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP048359.1_2215218_2216592_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP048359.1_2216806_2217448_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP048359.1_2217487_2218636_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP048359.1_2218926_2220138_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP048359.1_2220250_2221183_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP048359.1_2221179_2222205_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP048359.1_2222503_2222593_+	NA	NA|390aa|down_8|NZ_CP048359.1_2222758_2223928_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP048359.1_2224073_2224655_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_010365485.1_ASM1036548v1	NZ_CP048359	Escherichia coli strain 53 chromosome, complete genome	6	2933771-2933862	5	CRISPRCasFinder	no		cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL,TnsE_C	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL,TnsE_C	NA|70aa|up_9|NZ_CP048359.1_2923021_2923231_-,NA	NA|70aa|up_9|NZ_CP048359.1_2923021_2923231_-	NA	NA|1321aa|up_8|NZ_CP048359.1_2923285_2927248_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP048359.1_2927287_2927926_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP048359.1_2928213_2929305_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP048359.1_2929304_2929997_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP048359.1_2930008_2930395_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP048359.1_2930402_2931203_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP048359.1_2931212_2931803_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP048359.1_2931813_2932308_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP048359.1_2932328_2933657_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP048359.1_2934285_2934882_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP048359.1_2934902_2935130_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP048359.1_2935167_2936409_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|385aa|down_3|NZ_CP048359.1_2936701_2937856_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP048359.1_2938216_2939137_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP048359.1_2939136_2939442_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP048359.1_2939534_2940134_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP048359.1_2940130_2942677_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP048359.1_2942676_2943849_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP048359.1_2943978_2944671_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_010365485.1_ASM1036548v1	NZ_CP048359	Escherichia coli strain 53 chromosome, complete genome	7	3255505-3255650	6	CRISPRCasFinder	no		cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL,TnsE_C	Orphan	CGATTTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCG	53	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL,TnsE_C	NA|94aa|up_6|NZ_CP048359.1_3250896_3251178_+,NA|201aa|up_4|NZ_CP048359.1_3251708_3252311_-,NA|56aa|up_3|NZ_CP048359.1_3252553_3252721_+,NA	NA|227aa|up_9|NZ_CP048359.1_3249862_3250543_+	pfam09588, YqaJ, YqaJ-like viral recombinase domain	NA|61aa|up_8|NZ_CP048359.1_3250539_3250722_+	pfam07026, DUF1317, Protein of unknown function (DUF1317)	NA|64aa|up_7|NZ_CP048359.1_3250694_3250886_+	pfam07131, DUF1382, Protein of unknown function (DUF1382)	NA|94aa|up_6|NZ_CP048359.1_3250896_3251178_+	NA	NA|74aa|up_5|NZ_CP048359.1_3251276_3251498_+	PHA00080, PHA00080, DksA-like zinc finger domain containing protein	NA|201aa|up_4|NZ_CP048359.1_3251708_3252311_-	NA	NA|56aa|up_3|NZ_CP048359.1_3252553_3252721_+	NA	NA|73aa|up_2|NZ_CP048359.1_3252760_3252979_+	pfam07825, Exc, Excisionase-like protein	NA|357aa|up_1|NZ_CP048359.1_3252956_3254027_+	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|428aa|up_0|NZ_CP048359.1_3254161_3255445_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP048359.1_3255678_3257940_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP048359.1_3258122_3259556_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP048359.1_3259631_3260684_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP048359.1_3260867_3261821_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP048359.1_3261861_3262857_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP048359.1_3263011_3263830_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP048359.1_3263830_3264889_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP048359.1_3264891_3265581_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP048359.1_3265580_3266354_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP048359.1_3266519_3266669_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_010365485.1_ASM1036548v1	NZ_CP048359	Escherichia coli strain 53 chromosome, complete genome	8	4063861-4063993	4	PILER-CR	no		cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL,TnsE_C	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL,TnsE_C	NA,NA	NA|200aa|up_9|NZ_CP048359.1_4054467_4055067_+	pfam14124, DUF4291, Domain of unknown function (DUF4291)	NA|60aa|up_8|NZ_CP048359.1_4055668_4055848_-	pfam07362, CcdA, Post-segregation antitoxin CcdA	NA|160aa|up_7|NZ_CP048359.1_4055868_4056348_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP048359.1_4056539_4058402_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP048359.1_4058394_4058925_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP048359.1_4059032_4060364_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP048359.1_4060422_4060710_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP048359.1_4060706_4061993_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP048359.1_4062043_4062985_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP048359.1_4062999_4063770_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP048359.1_4064243_4065758_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP048359.1_4065788_4066931_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP048359.1_4067059_4068277_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP048359.1_4068350_4069904_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP048359.1_4070012_4070798_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP048359.1_4070803_4071394_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP048359.1_4071479_4071875_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_7|NZ_CP048359.1_4072135_4075357_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP048359.1_4075374_4076523_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP048359.1_4076978_4077800_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
GCF_010365485.1_ASM1036548v1	NZ_CP048359	Escherichia coli strain 53 chromosome, complete genome	9	4849410-4849549	5	PILER-CR	no	TnsE_C	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL,TnsE_C	Orphan	CCCAGTTCCCAACTATTTTGTCA	23	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL,TnsE_C	NA|126aa|up_8|NZ_CP048359.1_4843580_4843958_-,NA|124aa|up_7|NZ_CP048359.1_4844367_4844739_-,NA|166aa|up_6|NZ_CP048359.1_4844799_4845297_-,NA	TnsE_C|539aa|up_9|NZ_CP048359.1_4841733_4843350_+	pfam18623, TnsE_C, TnsE C-terminal domain	NA|126aa|up_8|NZ_CP048359.1_4843580_4843958_-	NA	NA|124aa|up_7|NZ_CP048359.1_4844367_4844739_-	NA	NA|166aa|up_6|NZ_CP048359.1_4844799_4845297_-	NA	NA|263aa|up_5|NZ_CP048359.1_4845372_4846161_-	PRK13746, PRK13746, aminoglycoside resistance protein; Provisional	NA|175aa|up_4|NZ_CP048359.1_4846218_4846743_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|158aa|up_3|NZ_CP048359.1_4846837_4847311_-	cd00209, DHFR, Dihydrofolate reductase (DHFR)	NA|179aa|up_2|NZ_CP048359.1_4847642_4848179_+	TIGR02249, Integrase/recombinase_E2_protein	NA|109aa|up_1|NZ_CP048359.1_4848293_4848620_+	TIGR02249, Integrase/recombinase_E2_protein	NA|80aa|up_0|NZ_CP048359.1_4848807_4849047_-	pfam08849, DUF1819, Putative inner membrane protein (DUF1819)	NA|191aa|down_0|NZ_CP048359.1_4849837_4850410_+	PRK15289, lpfA, fimbrial protein; Provisional	NA|244aa|down_1|NZ_CP048359.1_4850457_4851189_+	PRK15290, lfpB, fimbrial chaperone	NA|841aa|down_2|NZ_CP048359.1_4851213_4853736_+	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|358aa|down_3|NZ_CP048359.1_4853746_4854820_+	PRK15291, PRK15291, fimbrial protein StgD; Provisional	NA|347aa|down_4|NZ_CP048359.1_4855067_4856108_+	PRK10918, PRK10918, phosphate ABC transporter substrate-binding protein PstS	NA|320aa|down_5|NZ_CP048359.1_4856194_4857154_+	PRK11275, pstC, phosphate ABC transporter permease PstC	NA|297aa|down_6|NZ_CP048359.1_4857153_4858044_+	PRK11268, pstA, phosphate ABC transporter permease PstA	NA|258aa|down_7|NZ_CP048359.1_4858134_4858908_+	PRK10744, pstB, phosphate ABC transporter ATP-binding protein PstB	NA|242aa|down_8|NZ_CP048359.1_4858922_4859648_+	PRK11115, PRK11115, phosphate signaling complex protein PhoU	NA|279aa|down_9|NZ_CP048359.1_4859933_4860770_+	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional
