The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP048401	Listeria monocytogenes strain 4/52-1953 chromosome, complete genome	2973626	69895	110491	2973626	terminase,holin,portal,protease,capsid,integrase	Listeria_phage(89.13%)	59	70970:71014	109375:109419
WP_012582203.1|69895_70852_+	NAD(P)-binding domain-containing protein	NA	M1H502	Paramecium_bursaria_Chlorella_virus	29.9	6.5e-31
70970:71014	attL	ACTCTTAATCAGCGGGTCGGGGGTTCGAAACCCTCACAACCCATA	NA	NA	NA	NA
WP_012582202.1|71119_72298_-|integrase	site-specific integrase	integrase	A0A0B5CTW8	Listeria_phage	55.3	6.2e-116
WP_012582201.1|72380_72929_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014588975.1|72948_73461_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A1S7FYX8	Listeria_phage	73.2	1.5e-66
WP_012582200.1|73484_73820_-	helix-turn-helix transcriptional regulator	NA	A0A1S7FZ25	Listeria_phage	64.2	2.0e-32
WP_012582199.1|74091_74295_+	helix-turn-helix domain-containing protein	NA	A0A1S7FZ40	Listeria_phage	68.8	5.6e-17
WP_012582198.1|74295_74481_+	helix-turn-helix domain-containing protein	NA	A0A1S7FYV9	Listeria_phage	71.9	1.0e-17
WP_041931062.1|74473_74758_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012582197.1|74747_75014_+	hypothetical protein	NA	A0A1S7FYW4	Listeria_phage	74.4	1.5e-25
WP_012582196.1|75019_75277_+	hypothetical protein	NA	Q8W5X5	Listeria_phage	87.7	3.9e-31
WP_014588976.1|75294_75633_+	DUF3310 domain-containing protein	NA	E2GLY2	Acinetobacter_phage	52.0	5.6e-14
WP_012582194.1|75625_75856_+	hypothetical protein	NA	A0A1S7FYX1	Listeria_phage	57.9	1.7e-14
WP_012582193.1|75852_76068_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012582192.1|76064_76817_+	hypothetical protein	NA	A0A1S7FZ47	Listeria_phage	34.3	1.1e-09
WP_012582191.1|76818_78000_+	DUF2800 domain-containing protein	NA	A0A1S7FYX0	Listeria_phage	75.6	1.1e-173
WP_014588977.1|78002_78665_+	DUF2815 family protein	NA	A0A1S7FZ05	Listeria_phage	73.1	3.1e-64
WP_012582189.1|78958_80596_+	DNA polymerase	NA	A0A1S7FZ18	Listeria_phage	80.2	5.3e-259
WP_012582188.1|80608_80833_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012582186.1|81279_81666_+	hypothetical protein	NA	M1PLH5	Streptococcus_phage	32.8	2.4e-08
WP_012582185.1|81665_81935_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012582184.1|81935_82307_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041176601.1|82504_82672_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012582182.1|82668_83103_+	hypothetical protein	NA	A8ATD9	Listeria_phage	56.3	7.0e-33
WP_012582180.1|83319_83502_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012582179.1|83535_85974_+	virulence-associated E family protein	NA	A0A1S7FZ15	Listeria_phage	85.4	0.0e+00
WP_012582178.1|86279_86558_+	VRR-NUC domain-containing protein	NA	A0A1S7FZ22	Listeria_phage	74.2	6.0e-30
WP_041176602.1|86569_87949_+	DEAD/DEAH box helicase	NA	A0A1S7FYY5	Listeria_phage	80.3	2.8e-216
WP_012582176.1|87932_88298_+	nucleoside triphosphate pyrophosphohydrolase family protein	NA	A0A1S7FYY8	Listeria_phage	58.7	1.0e-29
WP_012582175.1|88297_88840_+	hypothetical protein	NA	A0A1S7FZ07	Listeria_phage	71.6	1.8e-62
WP_041176473.1|88977_89310_+	hypothetical protein	NA	A0A060AG27	Listeria_phage	65.8	2.5e-38
WP_041176474.1|89310_89619_+	HNH endonuclease	NA	A0A1S7FZ53	Listeria_phage	85.3	2.5e-45
WP_003768814.1|89741_90095_+|terminase	terminase	terminase	A0A1S7FYW6	Listeria_phage	80.3	1.7e-45
WP_012582174.1|90081_91728_+|terminase	terminase large subunit	terminase	A0A1S7FZ68	Listeria_phage	87.4	1.4e-291
WP_012582173.1|91739_92948_+|portal	phage portal protein	portal	A0A1S7FYX7	Listeria_phage	84.9	1.7e-193
WP_012582172.1|92944_93775_+|protease	Clp protease ClpP	protease	A0A1S7FZ23	Listeria_phage	71.4	2.5e-103
WP_012582171.1|93808_94954_+|capsid	phage major capsid protein	capsid	A0A1S7FZ31	Listeria_phage	86.3	9.4e-186
WP_012582170.1|95091_95388_+	hypothetical protein	NA	A0A1S7FYY9	Listeria_phage	68.4	3.4e-31
WP_094153171.1|95497_95704_+	hypothetical protein	NA	A0A1S7FZ08	Listeria_phage	79.1	2.8e-24
WP_041176475.1|95705_96107_+	hypothetical protein	NA	A0A1S7FYZ7	Listeria_phage	66.4	2.8e-44
WP_012582169.1|96093_96519_+	hypothetical protein	NA	A0A1S7FZ20	Listeria_phage	82.1	3.6e-58
WP_012582168.1|96534_97122_+	hypothetical protein	NA	A0A1S7FZ79	Listeria_phage	73.8	9.3e-81
WP_012582167.1|97132_97384_+	plasmid partitioning protein	NA	NA	NA	NA	NA
WP_012582166.1|97446_97818_+	hypothetical protein	NA	A0A1S7FZ84	Listeria_phage	69.9	5.7e-44
WP_012582165.1|97997_102392_+	hypothetical protein	NA	A0A1S7FYZ4	Listeria_phage	69.7	0.0e+00
WP_012582164.1|102388_103297_+	hypothetical protein	NA	A0A1S7FZ36	Listeria_phage	80.3	8.3e-137
WP_012582163.1|103296_104322_+	hypothetical protein	NA	A0A1S7FZ49	Listeria_phage	78.0	2.5e-158
WP_012582162.1|104324_105095_+	hypothetical protein	NA	A0A1S7FZ03	Listeria_phage	74.2	4.9e-114
WP_003768842.1|105094_105394_+	hypothetical protein	NA	A0A1S7FZ19	Listeria_phage	56.3	1.4e-24
WP_014588982.1|105581_105803_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003768869.1|105804_106215_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014588983.1|106224_106479_+|holin	phage holin	holin	Q8W5Y9	Listeria_phage	90.4	5.1e-36
WP_012582159.1|106478_106712_+	hypothetical protein	NA	R4IBI3	Listeria_phage	88.3	7.8e-31
WP_012582158.1|106714_107641_+	N-acetylmuramoyl-L-alanine amidase family protein	NA	R4ICC5	Listeria_phage	86.0	1.0e-158
WP_014588984.1|107665_108085_+	hypothetical protein	NA	A0A0B5CTT3	Listeria_phage	47.9	1.2e-29
WP_012582157.1|108133_108397_-	AcrIIA4 family anti-CRISPR protein	NA	A0A2D0TCG7	unidentified_phage	81.6	4.2e-33
WP_012582156.1|108621_108810_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012582155.1|108841_109045_-	hypothetical protein	NA	A8ATJ3	Listeria_phage	77.3	2.0e-22
WP_041176476.1|109625_109952_+	hypothetical protein	NA	NA	NA	NA	NA
109375:109419	attR	ACTCTTAATCAGCGGGTCGGGGGTTCGAAACCCTCACAACCCATA	NA	NA	NA	NA
WP_003728958.1|109987_110491_-	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	42.9	6.9e-08
>prophage 2
NZ_CP048401	Listeria monocytogenes strain 4/52-1953 chromosome, complete genome	2973626	1194109	1298328	2973626	terminase,tail,holin,portal,protease,capsid,plate,integrase,tRNA	Listeria_phage(78.46%)	116	1192259:1192275	1288037:1288053
1192259:1192275	attL	AGAAGAATTTGGTCAAT	NA	NA	NA	NA
WP_012581499.1|1194109_1196518_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003729718.1|1196679_1197381_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.8	6.6e-33
WP_012581497.1|1197394_1200805_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_003729716.1|1200902_1201355_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_012581496.1|1201370_1204571_+	MMPL family transporter	NA	NA	NA	NA	NA
WP_012581495.1|1204674_1205349_+	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	47.7	7.5e-50
WP_041176503.1|1205386_1206313_-	ribonuclease HIII	NA	NA	NA	NA	NA
WP_012581493.1|1206466_1206730_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_003729712.1|1206729_1207272_+	CvpA family protein	NA	NA	NA	NA	NA
WP_012581492.1|1207364_1209077_+	DNA polymerase/3'-5' exonuclease PolX	NA	A0A2H4UV14	Bodo_saltans_virus	24.4	1.5e-17
WP_012581491.1|1209099_1211457_+	endonuclease MutS2	NA	Q94M10	Lactobacillus_phage	50.4	1.0e-21
WP_012581490.1|1211538_1211850_+	thioredoxin	NA	A0A1X9I9P5	Staphylococcus_phage	39.6	7.0e-19
WP_012581489.1|1211925_1213737_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003729709.1|1213930_1215145_+	aspartate kinase	NA	NA	NA	NA	NA
WP_014598970.1|1215202_1215697_-	YslB family protein	NA	NA	NA	NA	NA
WP_012581487.1|1215844_1216645_+	glutamate racemase	NA	NA	NA	NA	NA
WP_003726032.1|1216657_1217404_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_012581486.1|1217407_1218019_+	XTP/dITP diphosphatase	NA	NA	NA	NA	NA
WP_003726034.1|1218055_1218580_+	metallophosphoesterase	NA	NA	NA	NA	NA
WP_012581485.1|1218865_1220020_-|integrase	site-specific integrase	integrase	Q8W5Y3	Listeria_phage	94.8	6.7e-208
WP_003730990.1|1220151_1220766_-	hypothetical protein	NA	A0A059T7Z1	Listeria_phage	77.0	7.7e-78
WP_012581484.1|1220816_1221269_-	ImmA/IrrE family metallo-endopeptidase	NA	R4IBK9	Listeria_phage	90.0	8.2e-77
WP_012581483.1|1221285_1221609_-	helix-turn-helix transcriptional regulator	NA	A0A059T6G1	Listeria_phage	71.0	8.5e-36
WP_003730994.1|1222008_1222212_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012581482.1|1222278_1222470_+	helix-turn-helix transcriptional regulator	NA	Q8W5X9	Listeria_phage	86.9	4.6e-21
WP_003730996.1|1222491_1222734_+	hypothetical protein	NA	A8ATD2	Listeria_phage	93.8	3.9e-41
WP_003730997.1|1222736_1222922_+	hypothetical protein	NA	A8ATD3	Listeria_phage	98.4	3.7e-28
WP_012581481.1|1223445_1223733_+	hypothetical protein	NA	A0A059T7V3	Listeria_phage	94.7	1.2e-44
WP_014589047.1|1224039_1225320_+	DNA (cytosine-5-)-methyltransferase	NA	A0A1X9I6Y5	Streptococcus_phage	54.6	8.4e-119
WP_010991289.1|1225316_1225715_+	hypothetical protein	NA	A0A0B5CYQ9	Listeria_phage	92.9	3.4e-66
WP_010991288.1|1225707_1225896_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012581477.1|1225892_1226186_+	hypothetical protein	NA	A8ATM4	Listeria_phage	78.4	8.9e-32
WP_012581476.1|1226202_1226601_+	hypothetical protein	NA	A0A0B5CYR4	Listeria_phage	56.4	6.8e-35
WP_012581474.1|1226771_1226960_+	hypothetical protein	NA	D7RWG4	Brochothrix_phage	45.0	8.8e-09
WP_012581473.1|1226956_1227412_+	pentapeptide repeat-containing protein	NA	A0A060AFJ6	Listeria_phage	85.9	6.2e-40
WP_003727764.1|1227408_1227594_+	hypothetical protein	NA	A0A059T5G1	Listeria_phage	100.0	4.1e-27
WP_003769971.1|1227590_1227881_+	hypothetical protein	NA	Q8W5X0	Listeria_phage	88.5	2.2e-43
WP_012581472.1|1227877_1228057_+	hypothetical protein	NA	A8ATE3	Listeria_phage	100.0	5.8e-26
WP_012581470.1|1228223_1228607_+	hypothetical protein	NA	A8ATE8	Listeria_phage	98.4	1.6e-65
WP_012581469.1|1228608_1229088_+	siphovirus Gp157 family protein	NA	R4IBM0	Listeria_phage	96.9	7.4e-76
WP_010991282.1|1229107_1229797_+	AAA family ATPase	NA	R4IDY8	Listeria_phage	100.0	1.2e-130
WP_014589050.1|1229860_1231117_+	DEAD/DEAH box helicase	NA	R4IBK4	Listeria_phage	95.0	4.9e-220
WP_012581467.1|1231139_1231625_+	DUF669 domain-containing protein	NA	R4ICE5	Listeria_phage	96.3	5.1e-85
WP_012581466.1|1231647_1233936_+	primase	NA	A8ATF3	Listeria_phage	91.3	0.0e+00
WP_012581465.1|1234269_1234587_+	VRR-NUC domain-containing protein	NA	A8ATF4	Listeria_phage	94.2	2.1e-50
WP_003731659.1|1234588_1234801_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012581464.1|1235390_1235924_+	DUF3310 domain-containing protein	NA	A8ATF5	Listeria_phage	80.6	8.7e-78
WP_009917712.1|1235924_1236350_+	DUF722 domain-containing protein	NA	A0A059T6H4	Listeria_phage	100.0	8.0e-74
WP_010991275.1|1236447_1237191_+	DUF559 domain-containing protein	NA	NA	NA	NA	NA
WP_012581463.1|1237665_1237980_+	HNH endonuclease	NA	A8ATF8	Listeria_phage	98.1	8.5e-57
WP_012581462.1|1238085_1238385_+	hypothetical protein	NA	A8AT94	Listeria_phage	83.8	5.8e-39
WP_012581461.1|1238381_1240022_+|terminase	terminase large subunit	terminase	A0A059T7Q8	Listeria_phage	76.2	2.7e-250
WP_012581460.1|1240033_1241164_+|portal	phage portal protein	portal	A8AT96	Listeria_phage	92.8	9.8e-204
WP_012581459.1|1241160_1241877_+|protease	Clp protease ClpP	protease	A0A1S5SFF8	Streptococcus_phage	57.0	1.0e-65
WP_012581458.1|1241903_1243055_+|capsid	phage major capsid protein	capsid	A8AT98	Listeria_phage	98.7	4.1e-213
WP_003731645.1|1243241_1243541_+	hypothetical protein	NA	A8ATA0	Listeria_phage	100.0	5.3e-48
WP_003731644.1|1243524_1243890_+	hypothetical protein	NA	A8ATA1	Listeria_phage	100.0	1.3e-64
WP_003731643.1|1243886_1244288_+	hypothetical protein	NA	A8ATA2	Listeria_phage	100.0	2.1e-68
WP_012581456.1|1244284_1244668_+	hypothetical protein	NA	A8ATA3	Listeria_phage	100.0	3.8e-67
WP_012581455.1|1244689_1245277_+|tail	phage tail protein	tail	A8ATA4	Listeria_phage	100.0	4.0e-108
WP_009917698.1|1245347_1245680_+	hypothetical protein	NA	A8ATA5	Listeria_phage	99.1	1.8e-52
WP_014589053.1|1245895_1250812_+|tail	phage tail tape measure protein	tail	A8ATA7	Listeria_phage	97.4	0.0e+00
WP_012581452.1|1250811_1251642_+|tail	phage tail family protein	tail	A8ATA8	Listeria_phage	100.0	1.7e-157
WP_012581451.1|1251651_1253244_+	hypothetical protein	NA	A8ATA9	Listeria_phage	100.0	1.2e-303
WP_012581450.1|1253243_1253468_+	hypothetical protein	NA	A8ATB0	Listeria_phage	100.0	1.5e-34
WP_012581449.1|1253467_1255387_+	hypothetical protein	NA	A8ATB1	Listeria_phage	99.8	0.0e+00
WP_014589054.1|1255398_1256673_+|plate	phage baseplate upper protein	plate	A8ATB2	Listeria_phage	96.5	6.1e-218
WP_012581447.1|1256689_1257010_+	hypothetical protein	NA	A8ATB3	Listeria_phage	81.1	5.5e-27
WP_012581446.1|1257010_1257157_+	XkdX family protein	NA	A0A059T6D9	Listeria_phage	100.0	1.1e-19
WP_012581445.1|1257182_1257638_+	hypothetical protein	NA	A8ATB5	Listeria_phage	100.0	1.2e-67
WP_012581444.1|1257604_1258000_+	hypothetical protein	NA	A8ATB6	Listeria_phage	100.0	2.4e-64
WP_012581443.1|1258012_1258261_+|holin	phage holin	holin	A8ATB7	Listeria_phage	100.0	1.4e-38
WP_012581442.1|1258260_1259091_+	hypothetical protein	NA	A8ATB8	Listeria_phage	89.1	2.3e-149
WP_012581441.1|1259471_1259738_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041176506.1|1259730_1260060_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012581439.1|1260052_1260622_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012581438.1|1260692_1261142_-	anti-CRISPR protein AcrIIA1	NA	Q9T196	Listeria_phage	97.3	3.8e-74
WP_012581437.1|1261146_1261497_-	AcrIIA2 family anti-CRISPR protein	NA	Q9T195	Listeria_phage	98.3	1.2e-56
WP_012581436.1|1261528_1261906_-	anti-CRISPR protein AcrIIA3	NA	Q9T194	Listeria_phage	99.2	1.3e-67
WP_012581435.1|1262011_1262221_-	hypothetical protein	NA	A0A059T7Z0	Listeria_phage	95.7	8.0e-27
WP_012581433.1|1263094_1263535_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_012581432.1|1263988_1264399_+	Cys-Gln thioester bond-forming surface protein	NA	NA	NA	NA	NA
WP_012581431.1|1264489_1266115_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003736406.1|1266427_1266847_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003736407.1|1266849_1267092_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_012581430.1|1267598_1267967_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014589058.1|1268035_1268491_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012581428.1|1268705_1269068_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012581427.1|1269735_1273425_+	LapB repeat-containing protein	NA	NA	NA	NA	NA
WP_012581426.1|1273547_1274906_+	DUF1254 domain-containing protein	NA	NA	NA	NA	NA
WP_003723540.1|1274947_1275541_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012581425.1|1275677_1276085_-	VOC family protein	NA	NA	NA	NA	NA
WP_003723542.1|1276249_1276849_+	histidine phosphatase family protein	NA	A0A1X9IGJ2	Lactococcus_phage	40.5	2.9e-29
WP_003723543.1|1276881_1277142_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012581424.1|1277265_1278678_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.1	2.2e-51
WP_003730329.1|1278702_1278966_+	DUF3116 family protein	NA	NA	NA	NA	NA
WP_012581423.1|1279131_1279608_+	8-oxo-dGTP diphosphatase	NA	NA	NA	NA	NA
WP_003730327.1|1279644_1279890_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012581422.1|1279886_1281092_-	MFS transporter	NA	NA	NA	NA	NA
WP_003726052.1|1281296_1281956_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_003726053.1|1281995_1282190_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003730323.1|1282256_1283105_-	YitT family protein	NA	NA	NA	NA	NA
WP_003736429.1|1283723_1284437_+	trehalose operon repressor	NA	NA	NA	NA	NA
WP_012581421.1|1284467_1286114_-	alpha,alpha-phosphotrehalase	NA	NA	NA	NA	NA
WP_003727531.1|1286132_1287617_-	PTS system trehalose-specific EIIBC component	NA	NA	NA	NA	NA
WP_012581420.1|1287734_1288196_+	NUDIX hydrolase	NA	NA	NA	NA	NA
1288037:1288053	attR	AGAAGAATTTGGTCAAT	NA	NA	NA	NA
WP_003726717.1|1288234_1288699_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012581419.1|1288887_1289802_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_012581418.1|1289826_1291074_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	52.3	5.5e-107
WP_003736436.1|1291057_1291888_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	42.4	1.2e-46
WP_012581417.1|1292035_1293175_-|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_003730316.1|1293256_1293652_-	helix-turn-helix transcriptional regulator	NA	A9D9J6	Lactobacillus_prophage	57.4	1.7e-14
WP_014589059.1|1293802_1294018_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_012581416.1|1294546_1295485_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003730674.1|1295600_1296884_+	trigger factor	NA	NA	NA	NA	NA
WP_003723886.1|1297068_1298328_+|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	63.2	1.4e-145
>prophage 3
NZ_CP048401	Listeria monocytogenes strain 4/52-1953 chromosome, complete genome	2973626	1842770	1851056	2973626		Prochlorococcus_phage(33.33%)	8	NA	NA
WP_012581151.1|1842770_1843337_-	phosphoribosylglycinamide formyltransferase	NA	E3SNR5	Prochlorococcus_phage	39.1	1.7e-26
WP_012581150.1|1843333_1844383_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	44.1	3.2e-63
WP_003722245.1|1844401_1845829_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	34.6	1.1e-53
WP_012581149.1|1845813_1848033_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	41.2	2.6e-160
WP_012581148.1|1848025_1848709_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_003722248.1|1848712_1848958_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_012581147.1|1848969_1849683_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	38.3	6.1e-42
WP_003729814.1|1849763_1851056_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	33.0	2.5e-17
>prophage 4
NZ_CP048401	Listeria monocytogenes strain 4/52-1953 chromosome, complete genome	2973626	2525696	2533524	2973626		Streptococcus_phage(50.0%)	7	NA	NA
WP_003722604.1|2525696_2526668_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	39.4	5.2e-52
WP_012580771.1|2526675_2527644_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	42.9	8.8e-68
WP_003729205.1|2527645_2528521_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.7	1.9e-08
WP_012580770.1|2528628_2530359_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	53.5	1.1e-174
WP_012580769.1|2530386_2531448_-	galactose mutarotase	NA	NA	NA	NA	NA
WP_003729208.1|2531463_2532447_-	UDP-glucose 4-epimerase GalE	NA	A0A2K9L5H6	Tupanvirus	38.4	1.8e-52
WP_003739737.1|2532564_2533524_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	54.1	1.5e-88
>prophage 5
NZ_CP048401	Listeria monocytogenes strain 4/52-1953 chromosome, complete genome	2973626	2619017	2707744	2973626	terminase,tail,holin,portal,protease,plate,integrase,tRNA	Listeria_phage(83.33%)	104	2650968:2650982	2705207:2705221
WP_012580731.1|2619017_2620688_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003723610.1|2620684_2621134_-	DUF1934 domain-containing protein	NA	NA	NA	NA	NA
WP_012580730.1|2621211_2621865_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_077904926.1|2621899_2622124_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_012580729.1|2622158_2623481_-	HD domain-containing protein	NA	A0A1B1ISR1	uncultured_Mediterranean_phage	32.7	5.8e-30
WP_012580728.1|2623495_2624332_-	lipoyl-[GcvH]:protein N-lipoyltransferase	NA	NA	NA	NA	NA
WP_003729274.1|2624650_2624851_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003729275.1|2624873_2625197_-	YxeA family protein	NA	NA	NA	NA	NA
WP_012580727.1|2625350_2627012_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003726112.1|2627146_2627761_-	SdpI family protein	NA	NA	NA	NA	NA
WP_012580726.1|2627784_2628417_-	nicotinamidase	NA	NA	NA	NA	NA
WP_003726114.1|2628417_2628942_-	dihydrofolate reductase	NA	NA	NA	NA	NA
WP_012580725.1|2628944_2629943_-	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003729280.1|2630039_2630312_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003729281.1|2630360_2631272_-	cation transporter	NA	NA	NA	NA	NA
WP_012580724.1|2631439_2632267_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_012580723.1|2632381_2633254_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_012580722.1|2633266_2633557_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_012580721.1|2633604_2635689_-	LapB repeat-containing protein	NA	NA	NA	NA	NA
WP_012580719.1|2636096_2638418_-	InlB B-repeat-containing protein	NA	NA	NA	NA	NA
WP_003729288.1|2638769_2639441_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.2	1.6e-36
WP_012580718.1|2639440_2640529_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_012580717.1|2640607_2641987_-	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	48.3	4.0e-58
WP_012580716.1|2641983_2642661_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	48.6	3.4e-58
WP_012580715.1|2642707_2643493_-	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA	NA
WP_012580714.1|2643554_2644031_-	DUF1641 domain-containing protein	NA	NA	NA	NA	NA
WP_012580713.1|2644030_2647018_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_012580712.1|2647515_2648358_+	S-adenosyl-l-methionine hydroxide adenosyltransferase family protein	NA	NA	NA	NA	NA
WP_012580711.1|2648407_2649889_-	multidrug efflux MFS transporter	NA	NA	NA	NA	NA
WP_003728385.1|2649989_2650877_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
2650968:2650982	attL	TTTAAACAATAAAAA	NA	NA	NA	NA
WP_012582427.1|2656667_2657696_-	P-loop NTPase	NA	NA	NA	NA	NA
WP_012582426.1|2657964_2659491_+	GW domain-containing glycosaminoglycan-binding protein	NA	A0A0K2CP65	Brevibacillus_phage	48.7	1.2e-26
WP_012582425.1|2659533_2660385_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	37.6	6.8e-48
WP_163622779.1|2660424_2660829_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012582423.1|2660950_2661313_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012582422.1|2661556_2662426_+	DUF4969 domain-containing protein	NA	NA	NA	NA	NA
WP_012582421.1|2663022_2663457_-	hypothetical protein	NA	A0A0B5CTT3	Listeria_phage	100.0	1.2e-80
WP_012582420.1|2663475_2664420_-	N-acetylmuramoyl-L-alanine amidase	NA	Q8W5Y8	Listeria_phage	91.7	9.5e-168
WP_012582419.1|2664412_2664673_-|holin	phage holin	holin	Q8W5Y9	Listeria_phage	100.0	1.6e-40
WP_012582418.1|2664693_2665098_-	hypothetical protein	NA	Q8W5Z0	Listeria_phage	90.3	2.8e-44
WP_003743972.1|2665076_2665520_-	hypothetical protein	NA	Q8W5Z1	Listeria_phage	100.0	8.0e-77
WP_012582417.1|2665556_2665715_-	hypothetical protein	NA	Q9T1A1	Listeria_phage	78.8	2.5e-12
WP_012582416.1|2665719_2665998_-	hypothetical protein	NA	A8ATB3	Listeria_phage	56.8	7.6e-17
WP_012582415.1|2665994_2667080_-|plate	BppU family phage baseplate upper protein	plate	A0A059T7W9	Listeria_phage	95.7	2.4e-82
WP_012582414.1|2667076_2668102_-	hypothetical protein	NA	A0A0B5D157	Listeria_phage	90.9	1.3e-173
WP_012582413.1|2668102_2669125_-	hypothetical protein	NA	A0A0B5D0G3	Listeria_phage	98.5	5.4e-193
WP_012582412.1|2669139_2669967_-|tail	phage tail family protein	tail	A0A059T6D8	Listeria_phage	96.7	1.1e-154
WP_012582411.1|2669963_2675330_-	tape measure protein	NA	Q9T1A7	Listeria_phage	95.6	0.0e+00
WP_003735024.1|2675340_2675940_-	hypothetical protein	NA	A0A0B5CTW0	Listeria_phage	72.0	1.9e-76
WP_003769943.1|2675945_2676368_-|tail	phage tail assembly chaperone	tail	Q9T1A9	Listeria_phage	97.9	5.9e-69
WP_012582410.1|2676422_2676662_-	hypothetical protein	NA	A0A059T5E4	Listeria_phage	75.9	5.2e-22
WP_012582409.1|2676684_2677122_-	hypothetical protein	NA	A0A0B5CYN3	Listeria_phage	98.6	4.2e-78
WP_012582408.1|2677124_2677532_-	hypothetical protein	NA	A8ASK1	Listeria_phage	98.5	5.9e-66
WP_012582407.1|2677531_2677870_-	hypothetical protein	NA	A8ASK0	Listeria_phage	98.2	3.2e-57
WP_012582406.1|2677869_2678232_-	hypothetical protein	NA	Q9T1B4	Listeria_phage	94.2	1.5e-60
WP_010990219.1|2678231_2678627_-	hypothetical protein	NA	A0A059T5E3	Listeria_phage	99.2	6.7e-67
WP_012582405.1|2678645_2679647_-	hypothetical protein	NA	A0A059T6D4	Listeria_phage	99.4	1.4e-185
WP_012582404.1|2679646_2680237_-	scaffold protein	NA	Q9T1B8	Listeria_phage	92.0	9.1e-76
WP_012582403.1|2680315_2681455_-	hypothetical protein	NA	A0A0B5D147	Listeria_phage	96.6	3.8e-203
WP_012582402.1|2681455_2683225_-|portal	phage portal protein	portal	A0A059T657	Listeria_phage	95.5	1.8e-265
WP_012582401.1|2683237_2684569_-|terminase	PBSX family phage terminase large subunit	terminase	A8ASJ2	Listeria_phage	94.4	3.1e-249
WP_012582400.1|2684537_2685080_-|terminase	terminase small subunit	terminase	A8ASJ1	Listeria_phage	98.9	5.4e-91
WP_012582399.1|2685118_2685418_-	hypothetical protein	NA	A0A2H4JBC0	uncultured_Caudovirales_phage	38.4	6.5e-14
WP_003735131.1|2685991_2686426_-	hypothetical protein	NA	A8ASQ1	Listeria_phage	99.3	4.3e-75
WP_012582398.1|2686444_2686609_-	hypothetical protein	NA	A8ASQ0	Listeria_phage	94.4	2.5e-20
WP_012582397.1|2686737_2687121_-	DUF2481 family protein	NA	A0A0B5CYS3	Listeria_phage	98.4	4.4e-63
WP_014589139.1|2687124_2687529_-	DUF1064 domain-containing protein	NA	A8ASP7	Listeria_phage	88.8	1.6e-60
WP_033533856.1|2687473_2687656_-	hypothetical protein	NA	A8ASP6	Listeria_phage	79.4	8.5e-17
WP_012582394.1|2687673_2688216_-	HNH endonuclease	NA	A0A1W6JNP0	Staphylococcus_phage	52.7	7.1e-43
WP_012582393.1|2688231_2688711_-	single-stranded DNA-binding protein	NA	A0A059T5E0	Listeria_phage	89.4	4.8e-75
WP_012582392.1|2688707_2689109_-	hypothetical protein	NA	A8ATZ6	Listeria_phage	82.0	3.9e-54
WP_012582391.1|2689120_2689348_-	DUF3850 domain-containing protein	NA	A0A059T7N3	Listeria_phage	97.3	3.9e-35
WP_012582390.1|2689340_2689541_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012582389.1|2689537_2689738_-	hypothetical protein	NA	A8ASP4	Listeria_phage	74.6	6.5e-18
WP_012582388.1|2689759_2690143_-	hypothetical protein	NA	A8ATZ3	Listeria_phage	90.6	1.5e-55
WP_012582387.1|2690139_2690601_-	hypothetical protein	NA	D9J0I6	Brochothrix_phage	33.1	8.2e-16
WP_012582385.1|2690771_2691161_-	hypothetical protein	NA	A0A0B5CYR4	Listeria_phage	54.6	3.8e-30
WP_012581477.1|2691177_2691471_-	hypothetical protein	NA	A8ATM4	Listeria_phage	78.4	8.9e-32
WP_010991288.1|2691467_2691656_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010991289.1|2691648_2692047_-	hypothetical protein	NA	A0A0B5CYQ9	Listeria_phage	92.9	3.4e-66
WP_014589047.1|2692043_2693324_-	DNA (cytosine-5-)-methyltransferase	NA	A0A1X9I6Y5	Streptococcus_phage	54.6	8.4e-119
WP_012582382.1|2693630_2693918_-	hypothetical protein	NA	A0A059T7V3	Listeria_phage	93.7	4.4e-44
WP_012582381.1|2693914_2694835_-	DnaD domain-containing protein	NA	A0A0B5D175	Listeria_phage	90.5	2.1e-140
WP_012582380.1|2694855_2695671_-	recombinase RecT	NA	A0A0B5CTU3	Listeria_phage	99.3	5.9e-150
WP_010991174.1|2695670_2696630_-	YqaJ viral recombinase family protein	NA	A8ATY5	Listeria_phage	99.4	1.3e-177
WP_003731815.1|2696862_2697051_-	hypothetical protein	NA	A0A0B5CU43	Listeria_phage	98.4	1.7e-28
WP_003734955.1|2697066_2697357_-	hypothetical protein	NA	A0A0B5CYM2	Listeria_phage	100.0	1.0e-48
WP_012582379.1|2697381_2697915_-	hypothetical protein	NA	A0A0B5CU01	Listeria_phage	93.2	1.2e-82
WP_012582378.1|2698039_2698828_-	phage antirepressor Ant	NA	Q9T178	Listeria_phage	93.1	1.4e-135
WP_012582377.1|2698839_2699115_-	hypothetical protein	NA	A8ASM5	Listeria_phage	83.0	2.7e-38
WP_012582376.1|2699143_2699425_-	hypothetical protein	NA	A0A0B5D168	Listeria_phage	97.8	1.2e-46
WP_003735007.1|2699436_2699631_-	hypothetical protein	NA	A0A059T6E5	Listeria_phage	100.0	1.3e-26
WP_003727743.1|2699854_2700121_-	hypothetical protein	NA	A0A059T7Q1	Listeria_phage	100.0	2.5e-41
WP_012582375.1|2700141_2700375_-	helix-turn-helix transcriptional regulator	NA	A8ASM3	Listeria_phage	95.9	1.6e-31
WP_012582374.1|2700536_2701013_+	helix-turn-helix transcriptional regulator	NA	A8ASM2	Listeria_phage	78.9	2.2e-56
WP_012582373.1|2701168_2701336_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012582372.1|2701390_2701996_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003770015.1|2702057_2702933_+	hypothetical protein	NA	A0A0B5D0D1	Listeria_phage	94.5	2.2e-150
WP_012582371.1|2703000_2704194_+|integrase	site-specific integrase	integrase	A0A0B5CTZ4	Listeria_phage	100.0	2.2e-217
WP_003726075.1|2704279_2704672_-	30S ribosomal protein S9	NA	NA	NA	NA	NA
WP_003727703.1|2704693_2705131_-	50S ribosomal protein L13	NA	NA	NA	NA	NA
WP_012582370.1|2705325_2706072_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
2705207:2705221	attR	TTTTTATTGTTTAAA	NA	NA	NA	NA
WP_003728530.1|2706077_2706875_-	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_003727701.1|2706877_2707744_-	energy-coupling factor ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	25.5	1.5e-10
