assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_010450895.1_ASM1045089v1	NZ_CP048427	Rhizobium daejeonense strain KACC 13094 chromosome, complete genome	1	540433-540949	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,csa3,cas3	csa3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL	Type I-E	CGGTTCATCCCCGCGTATGCGGGGAACAC,CGGTTCATCCCCGCGTATGCGGGGAACAC,CGGTTCATCCCCGCGTATGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	8,8,5	8	TypeI-E	csa3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL	NA,NA	NA|145aa|up_9|NZ_CP048427.1_525384_525819_-	COG3602, COG3602, Uncharacterized protein conserved in bacteria [Function unknown]	NA|446aa|up_8|NZ_CP048427.1_525944_527282_+	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|300aa|up_7|NZ_CP048427.1_527284_528184_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|290aa|up_6|NZ_CP048427.1_528344_529214_+	pfam13672, PP2C_2, Protein phosphatase 2C	NA|1256aa|up_5|NZ_CP048427.1_529407_533175_-	PRK09490, metH, B12-dependent methionine synthase; Provisional	NA|419aa|up_4|NZ_CP048427.1_533367_534624_+	pfam07221, GlcNAc_2-epim, N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase)	NA|401aa|up_3|NZ_CP048427.1_534632_535835_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|791aa|up_2|NZ_CP048427.1_535841_538214_-	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|236aa|up_1|NZ_CP048427.1_538207_538915_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|375aa|up_0|NZ_CP048427.1_539014_540139_-	cd08281, liver_ADH_like1, Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)	NA|541aa|down_0|NZ_CP048427.1_541069_542692_-	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|422aa|down_1|NZ_CP048427.1_542840_544106_+	cd00840, MPP_Mre11_N, Mre11 nuclease, N-terminal metallophosphatase domain	NA|1165aa|down_2|NZ_CP048427.1_544102_547597_+	pfam13514, AAA_27, AAA domain	cas2|95aa|down_3|NZ_CP048427.1_548133_548418_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|311aa|down_4|NZ_CP048427.1_548414_549347_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|259aa|down_5|NZ_CP048427.1_549379_550156_-	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas5|247aa|down_6|NZ_CP048427.1_550152_550893_-	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|355aa|down_7|NZ_CP048427.1_550898_551963_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|198aa|down_8|NZ_CP048427.1_551962_552556_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|558aa|down_9|NZ_CP048427.1_552552_554226_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1
GCF_010450895.1_ASM1045089v1	NZ_CP048427	Rhizobium daejeonense strain KACC 13094 chromosome, complete genome	2	547783-547995	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,csa3,cas3	csa3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL	Type I-E	CGGTTCATCCCCACGCGTGTGGGGAACACT,CGGTTCATCCCCACGCGTGTGGGGAACAC,CGGTTCATCCCCACGCGTGTGGGGAACAC	30,29,29	3	3	547874-547904|547873-547904|547877-547908	NZ_CP048427.1_3964421-3964451|NZ_CP048427.1_3964420-3964451|NZ_CP048427.1_3964420-3964451	I-E,II-B:I-E,II-B:I-E,II-B	3,3,3	3	TypeI-E	csa3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL	NA,NA	NA|290aa|up_9|NZ_CP048427.1_528344_529214_+	pfam13672, PP2C_2, Protein phosphatase 2C	NA|1256aa|up_8|NZ_CP048427.1_529407_533175_-	PRK09490, metH, B12-dependent methionine synthase; Provisional	NA|419aa|up_7|NZ_CP048427.1_533367_534624_+	pfam07221, GlcNAc_2-epim, N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase)	NA|401aa|up_6|NZ_CP048427.1_534632_535835_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|791aa|up_5|NZ_CP048427.1_535841_538214_-	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|236aa|up_4|NZ_CP048427.1_538207_538915_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|375aa|up_3|NZ_CP048427.1_539014_540139_-	cd08281, liver_ADH_like1, Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)	NA|541aa|up_2|NZ_CP048427.1_541069_542692_-	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|422aa|up_1|NZ_CP048427.1_542840_544106_+	cd00840, MPP_Mre11_N, Mre11 nuclease, N-terminal metallophosphatase domain	NA|1165aa|up_0|NZ_CP048427.1_544102_547597_+	pfam13514, AAA_27, AAA domain	cas2|95aa|down_0|NZ_CP048427.1_548133_548418_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|311aa|down_1|NZ_CP048427.1_548414_549347_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|259aa|down_2|NZ_CP048427.1_549379_550156_-	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas5|247aa|down_3|NZ_CP048427.1_550152_550893_-	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|355aa|down_4|NZ_CP048427.1_550898_551963_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|198aa|down_5|NZ_CP048427.1_551962_552556_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|558aa|down_6|NZ_CP048427.1_552552_554226_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	NA|141aa|down_7|NZ_CP048427.1_554569_554992_-	PRK10026, PRK10026, arsenate reductase (glutaredoxin)	NA|233aa|down_8|NZ_CP048427.1_554994_555693_-	COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]	csa3|118aa|down_9|NZ_CP048427.1_555689_556043_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors
GCF_010450895.1_ASM1045089v1	NZ_CP048427	Rhizobium daejeonense strain KACC 13094 chromosome, complete genome	3	556111-556567	3,3,3	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,csa3,cas3	csa3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL	Type I-E	CGGTTCATCCCCGCGTGTGCGGGGAACAC,CGGTTCATCCCCGCGTGTGCGGGGAACAC,CGGTTCATCCCCGCGTGTGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	7,6,6	7	TypeI-E	csa3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL	NA,NA|201aa|down_2|NZ_CP048427.1_561052_561655_+,NA|285aa|down_6|NZ_CP048427.1_564825_565680_+,NA|199aa|down_7|NZ_CP048427.1_565938_566535_+,NA|73aa|down_8|NZ_CP048427.1_566579_566798_+	cas2|95aa|up_9|NZ_CP048427.1_548133_548418_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|311aa|up_8|NZ_CP048427.1_548414_549347_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|259aa|up_7|NZ_CP048427.1_549379_550156_-	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas5|247aa|up_6|NZ_CP048427.1_550152_550893_-	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|355aa|up_5|NZ_CP048427.1_550898_551963_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|198aa|up_4|NZ_CP048427.1_551962_552556_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|558aa|up_3|NZ_CP048427.1_552552_554226_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	NA|141aa|up_2|NZ_CP048427.1_554569_554992_-	PRK10026, PRK10026, arsenate reductase (glutaredoxin)	NA|233aa|up_1|NZ_CP048427.1_554994_555693_-	COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]	csa3|118aa|up_0|NZ_CP048427.1_555689_556043_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	cas3|907aa|down_0|NZ_CP048427.1_556737_559458_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|247aa|down_1|NZ_CP048427.1_559853_560594_-	COG2968, COG2968, Uncharacterized conserved protein [Function unknown]	NA|201aa|down_2|NZ_CP048427.1_561052_561655_+	NA	NA|309aa|down_3|NZ_CP048427.1_561654_562581_+	pfam16162, DUF4868, Domain of unknown function (DUF4868)	NA|274aa|down_4|NZ_CP048427.1_562772_563594_+	cd00144, MPP_PPP_family, phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain	NA|126aa|down_5|NZ_CP048427.1_563911_564289_-	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism]	NA|285aa|down_6|NZ_CP048427.1_564825_565680_+	NA	NA|199aa|down_7|NZ_CP048427.1_565938_566535_+	NA	NA|73aa|down_8|NZ_CP048427.1_566579_566798_+	NA	NA|571aa|down_9|NZ_CP048427.1_567007_568720_+	cd01406, SIR2-like, Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation
GCF_010450895.1_ASM1045089v1	NZ_CP048427	Rhizobium daejeonense strain KACC 13094 chromosome, complete genome	4	3939136-3939216	4	CRISPRCasFinder	no		csa3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL	Orphan	GCCGCTTCGAAGAAGAAGGCTGCT	24	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL	NA|154aa|up_5|NZ_CP048427.1_3932292_3932754_+,NA|54aa|down_0|NZ_CP048427.1_3939325_3939487_-,NA|136aa|down_7|NZ_CP048427.1_3947590_3947998_+	NA|117aa|up_9|NZ_CP048427.1_3927967_3928318_+	COG1862, YajC, Preprotein translocase subunit YajC [Intracellular trafficking and secretion]	NA|851aa|up_8|NZ_CP048427.1_3928383_3930936_+	PRK14726, PRK14726, protein translocase subunit SecDF	NA|129aa|up_7|NZ_CP048427.1_3930953_3931340_+	COG3737, COG3737, Uncharacterized conserved protein [Function unknown]	NA|281aa|up_6|NZ_CP048427.1_3931369_3932212_+	COG1562, ERG9, Phytoene/squalene synthetase [Lipid metabolism]	NA|154aa|up_5|NZ_CP048427.1_3932292_3932754_+	NA	NA|472aa|up_4|NZ_CP048427.1_3932878_3934294_-	PRK05335, PRK05335, tRNA (uracil-5-)-methyltransferase Gid; Reviewed	NA|48aa|up_3|NZ_CP048427.1_3934409_3934553_-	COG5457, COG5457, Uncharacterized conserved small protein [Function unknown]	NA|49aa|up_2|NZ_CP048427.1_3934812_3934959_-	COG5457, COG5457, Uncharacterized conserved small protein [Function unknown]	NA|368aa|up_1|NZ_CP048427.1_3935622_3936726_+	COG4872, COG4872, Predicted membrane protein [Function unknown]	NA|194aa|up_0|NZ_CP048427.1_3936731_3937313_+	pfam14345, GDYXXLXY, GDYXXLXY protein	NA|54aa|down_0|NZ_CP048427.1_3939325_3939487_-	NA	NA|477aa|down_1|NZ_CP048427.1_3939546_3940977_-	PRK05249, PRK05249, Si-specific NAD(P)(+) transhydrogenase	NA|620aa|down_2|NZ_CP048427.1_3941159_3943019_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|283aa|down_3|NZ_CP048427.1_3943050_3943899_-	PRK00024, PRK00024, DNA repair protein RadC	NA|279aa|down_4|NZ_CP048427.1_3943902_3944739_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|240aa|down_5|NZ_CP048427.1_3944777_3945497_-	PRK00347, PRK00347, DNA/RNA nuclease SfsA	NA|632aa|down_6|NZ_CP048427.1_3945585_3947481_-	TIGR01838, Poly-beta-hydroxybutyrate_polymerase, poly(R)-hydroxyalkanoic acid synthase, class I	NA|136aa|down_7|NZ_CP048427.1_3947590_3947998_+	NA	NA|406aa|down_8|NZ_CP048427.1_3948226_3949444_+	PRK09148, PRK09148, LL-diaminopimelate aminotransferase	NA|440aa|down_9|NZ_CP048427.1_3949506_3950826_+	PRK06349, PRK06349, homoserine dehydrogenase; Provisional
GCF_010450895.1_ASM1045089v1	NZ_CP048426	Rhizobium daejeonense strain KACC 13094 plasmid unnamed3, complete sequence	1	38223-38311	1	CRISPRCasFinder	no			Orphan	CCTTCTCCCCGCAAGCGGGGAGA	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL	NA,NA	NA|294aa|up_9|NZ_CP048426.1_27284_28166_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|415aa|up_8|NZ_CP048426.1_28336_29581_-	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|332aa|up_7|NZ_CP048426.1_29762_30758_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|183aa|up_6|NZ_CP048426.1_30781_31330_-	PRK09943, PRK09943, HTH-type transcriptional regulator PuuR	NA|445aa|up_5|NZ_CP048426.1_31474_32809_+	PRK09221, PRK09221, beta alanine--pyruvate transaminase; Provisional	NA|459aa|up_4|NZ_CP048426.1_32929_34306_-	cd07772, FGGY_NaCK_like, Novosphingobium aromaticivorans carbohydrate kinase-like proteins; belongs to the FGGY family of carbohydrate kinases	NA|108aa|up_3|NZ_CP048426.1_34302_34626_-	COG3254, COG3254, Uncharacterized conserved protein [Function unknown]	NA|339aa|up_2|NZ_CP048426.1_34625_35642_-	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|333aa|up_1|NZ_CP048426.1_35638_36637_-	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|511aa|up_0|NZ_CP048426.1_36647_38180_-	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|332aa|down_0|NZ_CP048426.1_38357_39353_-	TIGR02637, putative_secreted_solute-binding_lipoprotein, rhamnose ABC transporter, rhamnose-binding protein	NA|271aa|down_1|NZ_CP048426.1_39408_40221_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|699aa|down_2|NZ_CP048426.1_40425_42522_+	PRK08324, PRK08324, bifunctional aldolase/short-chain dehydrogenase	NA|431aa|down_3|NZ_CP048426.1_42642_43935_+	COG4952, COG4952, Predicted sugar isomerase [Cell envelope biogenesis, outer membrane]	NA|549aa|down_4|NZ_CP048426.1_44191_45838_+	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|163aa|down_5|NZ_CP048426.1_46162_46651_+	COG1846, MarR, Transcriptional regulators [Transcription]	NA|240aa|down_6|NZ_CP048426.1_46647_47367_+	cd08932, HetN_like_SDR_c, HetN oxidoreductase-like, classical (c) SDR	NA|444aa|down_7|NZ_CP048426.1_47368_48700_+	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|555aa|down_8|NZ_CP048426.1_48845_50510_+	cd08513, PBP2_thermophilic_Hb8_like, The substrate-binding component of ABC-type thermophilic oligopeptide-binding protein Hb8-like import systems, contains the type 2 periplasmic binding fold	NA|317aa|down_9|NZ_CP048426.1_50620_51571_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
