assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_010509415.1_ASM1050941v1	NZ_CP048439	Escherichia coli strain NBRC 3301 chromosome, complete genome	1	647236-647376	1	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	Orphan	CACGCCGCATCCGCCAGTGGCGCGGTGCAGATGCCGGATGC	41	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	NA,NA|357aa|down_1|NZ_CP048439.1_649830_650901_-	NA|184aa|up_9|NZ_CP048439.1_636957_637509_+	pfam10688, Imp-YgjV, Bacterial inner membrane protein	NA|415aa|up_8|NZ_CP048439.1_637513_638758_-	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional	NA|322aa|up_7|NZ_CP048439.1_639156_640122_-	TIGR03718, R_switched_Alx, integral membrane protein, TerC family	NA|329aa|up_6|NZ_CP048439.1_640404_641391_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|231aa|up_5|NZ_CP048439.1_641469_642162_-	COG2949, SanA, Uncharacterized membrane protein [Function unknown]	NA|168aa|up_4|NZ_CP048439.1_642238_642742_-	COG1451, COG1451, Predicted metal-dependent hydrolase [General function prediction only]	NA|379aa|up_3|NZ_CP048439.1_642826_643963_+	PRK15001, PRK15001, 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG	NA|105aa|up_2|NZ_CP048439.1_644246_644561_+	COG4680, COG4680, Uncharacterized protein conserved in bacteria [Function unknown]	NA|139aa|up_1|NZ_CP048439.1_644557_644974_+	COG5499, COG5499, Predicted transcription regulator containing HTH domain [Transcription]	NA|673aa|up_0|NZ_CP048439.1_645018_647037_-	cd02930, DCR_FMN, 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain	NA|784aa|down_0|NZ_CP048439.1_647462_649814_-	PRK10137, PRK10137, alpha-glucosidase; Provisional	NA|357aa|down_1|NZ_CP048439.1_649830_650901_-	NA	NA|478aa|down_2|NZ_CP048439.1_651034_652468_-	PRK15238, PRK15238, inner membrane transporter YjeM; Provisional	NA|150aa|down_3|NZ_CP048439.1_652530_652980_-	PRK10202, ebgC, beta-galactosidase subunit beta	NA|1031aa|down_4|NZ_CP048439.1_652976_656069_-	PRK10340, ebgA, cryptic beta-D-galactosidase subunit alpha; Reviewed	NA|328aa|down_5|NZ_CP048439.1_656252_657236_-	PRK10339, PRK10339, DNA-binding transcriptional repressor EbgR; Provisional	NA|111aa|down_6|NZ_CP048439.1_657454_657787_+	PRK10089, PRK10089, chaperone CsaA	NA|497aa|down_7|NZ_CP048439.1_657828_659319_-	PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase; Provisional	NA|507aa|down_8|NZ_CP048439.1_659625_661146_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|208aa|down_9|NZ_CP048439.1_661299_661923_-	COG1695, COG1695, Predicted transcriptional regulators [Transcription]
GCF_010509415.1_ASM1050941v1	NZ_CP048439	Escherichia coli strain NBRC 3301 chromosome, complete genome	2	958829-959222	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	Unclear	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACC	28,28,28	0	0	NA	NA	I-E:I-E:I-E	6,6,6	6	Unclear	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	NA|47aa|up_1|NZ_CP048439.1_957538_957679_-,NA	NA|434aa|up_9|NZ_CP048439.1_948235_949537_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP048439.1_949584_951819_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP048439.1_951896_952145_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP048439.1_952144_952480_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP048439.1_952550_953342_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP048439.1_953569_955207_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP048439.1_955294_956593_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP048439.1_956652_957525_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP048439.1_957538_957679_-	NA	NA|224aa|up_0|NZ_CP048439.1_957817_958489_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP048439.1_959861_961340_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP048439.1_961366_962644_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP048439.1_962962_963748_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP048439.1_963817_965272_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|NZ_CP048439.1_965293_966703_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP048439.1_966680_967460_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|298aa|down_6|NZ_CP048439.1_967423_968317_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP048439.1_968464_969040_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP048439.1_969056_969317_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP048439.1_969307_970579_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_010509415.1_ASM1050941v1	NZ_CP048439	Escherichia coli strain NBRC 3301 chromosome, complete genome	3	984773-985535	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	Type I-E	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	8,12,12	12	TypeI-E	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|571aa|up_9|NZ_CP048439.1_973136_974849_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|NZ_CP048439.1_974923_975658_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|889aa|up_7|NZ_CP048439.1_976016_978683_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|503aa|up_6|NZ_CP048439.1_979097_980606_+	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cse2gr11|161aa|up_5|NZ_CP048439.1_980598_981081_+	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|364aa|up_4|NZ_CP048439.1_981093_982185_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|225aa|up_3|NZ_CP048439.1_982187_982862_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|200aa|up_2|NZ_CP048439.1_982848_983448_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|306aa|up_1|NZ_CP048439.1_983463_984381_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_0|NZ_CP048439.1_984382_984667_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP048439.1_985617_986655_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP048439.1_986906_987815_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP048439.1_987816_989244_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP048439.1_989243_989849_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP048439.1_989898_990222_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP048439.1_990415_990727_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP048439.1_990745_991456_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP048439.1_991455_991935_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP048439.1_991931_992981_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP048439.1_992961_993723_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_010509415.1_ASM1050941v1	NZ_CP048439	Escherichia coli strain NBRC 3301 chromosome, complete genome	4	1515949-1516066	4	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|62aa|up_9|NZ_CP048439.1_1505234_1505420_-	PRK09956, PRK09956, ISNCY family transposase	NA|300aa|up_8|NZ_CP048439.1_1505432_1506332_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_CP048439.1_1506524_1507715_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_CP048439.1_1507711_1508971_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_CP048439.1_1508960_1510589_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_CP048439.1_1510861_1512220_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_CP048439.1_1512224_1513301_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_CP048439.1_1513763_1514414_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP048439.1_1514467_1514722_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP048439.1_1514721_1515852_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP048439.1_1516085_1518371_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_CP048439.1_1519066_1522819_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP048439.1_1522946_1523669_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP048439.1_1523815_1526443_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP048439.1_1526591_1528280_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP048439.1_1528276_1528900_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|down_6|NZ_CP048439.1_1533438_1535088_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_7|NZ_CP048439.1_1535092_1535869_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_8|NZ_CP048439.1_1535942_1537127_-	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|441aa|down_9|NZ_CP048439.1_1537157_1538480_-	pfam02667, SCFA_trans, Short chain fatty acid transporter
GCF_010509415.1_ASM1050941v1	NZ_CP048439	Escherichia coli strain NBRC 3301 chromosome, complete genome	5	2104137-2104260	5	CRISPRCasFinder	no	DEDDh	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	NA,NA|30aa|down_7|NZ_CP048439.1_2113156_2113246_+	NA|471aa|up_9|NZ_CP048439.1_2093591_2095004_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP048439.1_2095560_2095770_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP048439.1_2096224_2096851_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP048439.1_2096871_2098974_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP048439.1_2098986_2099625_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP048439.1_2099688_2100357_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP048439.1_2100353_2101139_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP048439.1_2101142_2101955_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP048439.1_2101966_2103571_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP048439.1_2103696_2104002_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP048439.1_2104574_2105831_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP048439.1_2105871_2107245_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP048439.1_2107459_2108101_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP048439.1_2108140_2109289_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP048439.1_2109579_2110791_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP048439.1_2110903_2111836_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP048439.1_2111832_2112858_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP048439.1_2113156_2113246_+	NA	NA|390aa|down_8|NZ_CP048439.1_2113411_2114581_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP048439.1_2114742_2115324_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_010509415.1_ASM1050941v1	NZ_CP048439	Escherichia coli strain NBRC 3301 chromosome, complete genome	6	2782660-2782751	6	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	NA|70aa|up_9|NZ_CP048439.1_2771736_2771946_-,NA	NA|70aa|up_9|NZ_CP048439.1_2771736_2771946_-	NA	NA|1321aa|up_8|NZ_CP048439.1_2772000_2775963_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP048439.1_2776002_2776641_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP048439.1_2776928_2778020_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP048439.1_2778019_2778712_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP048439.1_2778723_2779110_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP048439.1_2779117_2779918_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP048439.1_2779927_2780518_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP048439.1_2780528_2781023_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP048439.1_2781043_2782372_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP048439.1_2783174_2783771_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP048439.1_2783791_2784019_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP048439.1_2784056_2785298_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_CP048439.1_2785590_2786847_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP048439.1_2787107_2788028_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP048439.1_2788027_2788333_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP048439.1_2788484_2789084_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP048439.1_2789080_2791627_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP048439.1_2791626_2792799_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP048439.1_2792928_2793621_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_010509415.1_ASM1050941v1	NZ_CP048439	Escherichia coli strain NBRC 3301 chromosome, complete genome	7	3093454-3093598	7	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	NA|94aa|up_4|NZ_CP048439.1_3090126_3090408_+,NA|56aa|up_3|NZ_CP048439.1_3090496_3090664_+,NA	NA|227aa|up_9|NZ_CP048439.1_3087753_3088434_+	pfam09588, YqaJ, YqaJ-like viral recombinase domain	NA|61aa|up_8|NZ_CP048439.1_3088430_3088613_+	pfam07026, DUF1317, Protein of unknown function (DUF1317)	NA|64aa|up_7|NZ_CP048439.1_3088585_3088777_+	pfam07131, DUF1382, Protein of unknown function (DUF1382)	NA|74aa|up_6|NZ_CP048439.1_3089168_3089390_+	PHA00080, PHA00080, DksA-like zinc finger domain containing protein	NA|183aa|up_5|NZ_CP048439.1_3089386_3089935_+	pfam13935, Ead_Ea22, Ead/Ea22-like protein	NA|94aa|up_4|NZ_CP048439.1_3090126_3090408_+	NA	NA|56aa|up_3|NZ_CP048439.1_3090496_3090664_+	NA	NA|73aa|up_2|NZ_CP048439.1_3090703_3090922_+	pfam07825, Exc, Excisionase-like protein	NA|357aa|up_1|NZ_CP048439.1_3090899_3091970_+	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|428aa|up_0|NZ_CP048439.1_3092104_3093388_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP048439.1_3093621_3095883_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP048439.1_3096065_3097499_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP048439.1_3097574_3098627_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP048439.1_3098810_3099764_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP048439.1_3099804_3100800_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP048439.1_3100954_3101773_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP048439.1_3101773_3102832_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP048439.1_3102834_3103524_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP048439.1_3103523_3104297_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP048439.1_3104463_3104613_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_010509415.1_ASM1050941v1	NZ_CP048439	Escherichia coli strain NBRC 3301 chromosome, complete genome	8	3347814-3347910	8	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|231aa|up_9|NZ_CP048439.1_3339609_3340302_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|NZ_CP048439.1_3340521_3341064_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|NZ_CP048439.1_3341534_3342401_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_CP048439.1_3342402_3342615_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_CP048439.1_3342722_3343244_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_CP048439.1_3343279_3344665_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_CP048439.1_3344838_3345333_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_CP048439.1_3345335_3346058_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_CP048439.1_3346175_3346685_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_CP048439.1_3346681_3347749_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_CP048439.1_3347943_3348837_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_CP048439.1_3348833_3349649_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_CP048439.1_3349659_3350919_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|NZ_CP048439.1_3350928_3352596_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|NZ_CP048439.1_3352912_3353962_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|NZ_CP048439.1_3353983_3355219_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|NZ_CP048439.1_3355229_3356015_+	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|382aa|down_7|NZ_CP048439.1_3356242_3357388_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|NZ_CP048439.1_3357409_3358711_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|NZ_CP048439.1_3358767_3360129_-	PRK08044, PRK08044, allantoinase AllB
GCF_010509415.1_ASM1050941v1	NZ_CP048439	Escherichia coli strain NBRC 3301 chromosome, complete genome	9	3488056-3488200	9	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	Orphan	TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	NA,NA|28aa|down_2|NZ_CP048439.1_3490245_3490329_-	NA|357aa|up_9|NZ_CP048439.1_3473194_3474265_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|194aa|up_8|NZ_CP048439.1_3474357_3474939_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|606aa|up_7|NZ_CP048439.1_3474943_3476761_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_6|NZ_CP048439.1_3476916_3478290_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_5|NZ_CP048439.1_3478365_3479685_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_4|NZ_CP048439.1_3480091_3481387_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_3|NZ_CP048439.1_3481444_3482134_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|401aa|up_2|NZ_CP048439.1_3482323_3483526_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1049aa|up_1|NZ_CP048439.1_3483522_3486669_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|395aa|up_0|NZ_CP048439.1_3486794_3487979_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|303aa|down_0|NZ_CP048439.1_3488223_3489132_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|304aa|down_1|NZ_CP048439.1_3489256_3490168_+	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|28aa|down_2|NZ_CP048439.1_3490245_3490329_-	NA	NA|95aa|down_3|NZ_CP048439.1_3490814_3491099_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_4|NZ_CP048439.1_3491170_3491848_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|64aa|down_5|NZ_CP048439.1_3492105_3492297_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_6|NZ_CP048439.1_3492346_3492871_-	PRK03731, aroL, shikimate kinase AroL	NA|153aa|down_7|NZ_CP048439.1_3493053_3493512_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|270aa|down_8|NZ_CP048439.1_3493631_3494441_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|372aa|down_9|NZ_CP048439.1_3494457_3495573_-	PRK10245, adrA, diguanylate cyclase AdrA; Provisional
GCF_010509415.1_ASM1050941v1	NZ_CP048439	Escherichia coli strain NBRC 3301 chromosome, complete genome	10	3856185-3856320	3	PILER-CR	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	Orphan	TGAATCACCAATATTGAAAA	20	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|126aa|up_9|NZ_CP048439.1_3846893_3847271_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|281aa|up_8|NZ_CP048439.1_3847277_3848120_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|160aa|up_7|NZ_CP048439.1_3848197_3848677_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP048439.1_3848868_3850731_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP048439.1_3850723_3851254_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP048439.1_3851361_3852693_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP048439.1_3852749_3853037_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP048439.1_3853033_3854320_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP048439.1_3854370_3855312_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP048439.1_3855326_3856097_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP048439.1_3856568_3858083_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP048439.1_3858113_3859256_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP048439.1_3859384_3860602_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP048439.1_3860675_3862229_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP048439.1_3862337_3863123_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP048439.1_3863128_3863719_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP048439.1_3863804_3864200_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_7|NZ_CP048439.1_3864461_3867683_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP048439.1_3867700_3868849_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP048439.1_3869304_3870126_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
