assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_010586925.1_ASM1058692v1	NZ_CP040856	Lactobacillus johnsonii strain G2A plasmid unnamed2, complete sequence	1	65874-66439	1,1,1	CRT,PILER-CR,CRISPRCasFinder	no	cas9	cas8e,cas9	Type II-A, or Type II-C?, Type II-B,Type II-C,Type II-B	NGGGTTCTATGTACTTAAAATGACTTATATCTAAAAC,GGGTTCTATGTACTTAAAATGACTTATATCTAAAAC,TATGTACTTAAAATGACTTATATCTAAAAC	37,36,30	0	0	NA	NA	NA:NA:NA	8,7,7	8	TypeII-A,TypeII-B,TypeII-C,TypeII-B,orTypeII-C?	RT,cas2,cas3,cas14j,c2c9_V-U4,DEDDh,DinG,csa3,cas9,cas8e	NA|72aa|up_5|NZ_CP040856.1_61030_61246_-,NA|94aa|up_4|NZ_CP040856.1_61262_61544_-,NA|138aa|up_3|NZ_CP040856.1_62259_62673_-,NA|175aa|up_2|NZ_CP040856.1_62886_63411_-,NA|106aa|up_1|NZ_CP040856.1_63859_64177_-,NA|290aa|down_1|NZ_CP040856.1_70899_71769_-,NA|379aa|down_2|NZ_CP040856.1_72236_73373_-,NA|86aa|down_3|NZ_CP040856.1_73553_73811_+,NA|73aa|down_4|NZ_CP040856.1_74800_75019_-,NA|137aa|down_5|NZ_CP040856.1_75005_75416_-,NA|145aa|down_6|NZ_CP040856.1_75504_75939_-,NA|182aa|down_7|NZ_CP040856.1_75935_76481_-,NA|102aa|down_8|NZ_CP040856.1_76470_76776_-,NA|177aa|down_9|NZ_CP040856.1_77212_77743_-	NA|738aa|up_9|NZ_CP040856.1_53298_55512_-	pfam17802, SpaA, Prealbumin-like fold domain	NA|223aa|up_8|NZ_CP040856.1_55536_56205_-	cd06165, Sortase_A, Sortase domain found in class A sortases	NA|612aa|up_7|NZ_CP040856.1_56207_58043_-	pfam17802, SpaA, Prealbumin-like fold domain	NA|873aa|up_6|NZ_CP040856.1_58262_60881_-	TIGR04320, hypothetical_protein, SEC10/PgrA surface exclusion domain	NA|72aa|up_5|NZ_CP040856.1_61030_61246_-	NA	NA|94aa|up_4|NZ_CP040856.1_61262_61544_-	NA	NA|138aa|up_3|NZ_CP040856.1_62259_62673_-	NA	NA|175aa|up_2|NZ_CP040856.1_62886_63411_-	NA	NA|106aa|up_1|NZ_CP040856.1_63859_64177_-	NA	NA|426aa|up_0|NZ_CP040856.1_64521_65799_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	cas9|1381aa|down_0|NZ_CP040856.1_66739_70882_-	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	NA|290aa|down_1|NZ_CP040856.1_70899_71769_-	NA	NA|379aa|down_2|NZ_CP040856.1_72236_73373_-	NA	NA|86aa|down_3|NZ_CP040856.1_73553_73811_+	NA	NA|73aa|down_4|NZ_CP040856.1_74800_75019_-	NA	NA|137aa|down_5|NZ_CP040856.1_75005_75416_-	NA	NA|145aa|down_6|NZ_CP040856.1_75504_75939_-	NA	NA|182aa|down_7|NZ_CP040856.1_75935_76481_-	NA	NA|102aa|down_8|NZ_CP040856.1_76470_76776_-	NA	NA|177aa|down_9|NZ_CP040856.1_77212_77743_-	NA
GCF_010586925.1_ASM1058692v1	NZ_CP040855	Lactobacillus johnsonii strain G2A plasmid unnamed1	1	93904-95261	1,1	CRISPRCasFinder,CRT	no	cas14j,cas9	cas14j,cas9	Type II-A, or Type II-C?, Type II-B,Type II-C,Type II-B	GTATTTAACCTAATAGCAATGACCTACATCTAAAAC,CCTANTAGAAATGNCNTACATCTAAAAC	36,28	1	1	94732-94761	NZ_CP040854.1_478051-478022	NA:NA	20,20	20	TypeII-A,TypeV,TypeII-B,TypeII-C,TypeII-B,orTypeII-C?	RT,cas2,cas3,cas14j,c2c9_V-U4,DEDDh,DinG,csa3,cas9,cas8e	NA|125aa|up_5|NZ_CP040855.1_91567_91942_-,NA|119aa|up_3|NZ_CP040855.1_92353_92710_-,NA|146aa|up_2|NZ_CP040855.1_92731_93169_-,NA|53aa|up_1|NZ_CP040855.1_93249_93408_-,NA|97aa|up_0|NZ_CP040855.1_93426_93717_-,NA|210aa|down_3|NZ_CP040855.1_101636_102266_-,NA|101aa|down_4|NZ_CP040855.1_102295_102598_-,NA|181aa|down_5|NZ_CP040855.1_102663_103206_-,NA|125aa|down_6|NZ_CP040855.1_103408_103783_+,NA|141aa|down_7|NZ_CP040855.1_103897_104320_-,NA|193aa|down_8|NZ_CP040855.1_104640_105219_-	NA|391aa|up_9|NZ_CP040855.1_87626_88799_-	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	cas14j|445aa|up_8|NZ_CP040855.1_89350_90685_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|155aa|up_7|NZ_CP040855.1_90783_91248_+	pfam01797, Y1_Tnp, Transposase IS200 like	NA|106aa|up_6|NZ_CP040855.1_91213_91531_-	pfam07319, DnaI_N, Primosomal protein DnaI N-terminus	NA|125aa|up_5|NZ_CP040855.1_91567_91942_-	NA	NA|134aa|up_4|NZ_CP040855.1_91948_92350_-	pfam10459, Peptidase_S46, Peptidase S46	NA|119aa|up_3|NZ_CP040855.1_92353_92710_-	NA	NA|146aa|up_2|NZ_CP040855.1_92731_93169_-	NA	NA|53aa|up_1|NZ_CP040855.1_93249_93408_-	NA	NA|97aa|up_0|NZ_CP040855.1_93426_93717_-	NA	cas9|635aa|down_0|NZ_CP040855.1_95574_97479_-	pfam16595, Cas9_PI, PAM-interacting domain of CRISPR-associated endonuclease Cas9	NA|350aa|down_1|NZ_CP040855.1_97502_98552_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	cas9|779aa|down_2|NZ_CP040855.1_98574_100911_-	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	NA|210aa|down_3|NZ_CP040855.1_101636_102266_-	NA	NA|101aa|down_4|NZ_CP040855.1_102295_102598_-	NA	NA|181aa|down_5|NZ_CP040855.1_102663_103206_-	NA	NA|125aa|down_6|NZ_CP040855.1_103408_103783_+	NA	NA|141aa|down_7|NZ_CP040855.1_103897_104320_-	NA	NA|193aa|down_8|NZ_CP040855.1_104640_105219_-	NA	NA|104aa|down_9|NZ_CP040855.1_105238_105550_-	cd03181, GST_C_EF1Bgamma_like, Glutathione S-transferase C-terminal-like, alpha helical domain of the Gamma subunit of Elongation Factor 1B and similar proteins
GCF_010586925.1_ASM1058692v1	NZ_CP040854	Lactobacillus johnsonii strain G2A chromosome, complete genome	1	1428727-1435166	1	CRT	no		RT,cas2,cas3,cas14j,c2c9_V-U4,DEDDh,DinG,csa3	Orphan	TCNCTCATNNNTACTGAGTT	20	23	176	1431327-1431366|1431327-1431366|1431327-1431366|1431327-1431366|1431387-1431426|1431447-1431474|1431447-1431474|1431447-1431474|1431447-1431474|1431447-1431474|1431447-1431474|1431447-1431474|1431447-1431474|1431447-1431474|1431447-1431474|1431447-1431474|1431447-1431474|1431447-1431474|1431447-1431474|1431447-1431474|1431447-1431474|1431447-1431474|1431447-1431474|1431447-1431474|1431447-1431474|1431447-1431474|1431447-1431474|1431447-1431474|1431495-1431516|1431495-1431516|1431495-1431516|1431495-1431516|1431495-1431516|1431495-1431516|1431495-1431516|1431495-1431516|1431495-1431516|1431495-1431516|1431495-1431516|1431495-1431516|1431495-1431516|1431495-1431516|1431495-1431516|1431495-1431516|1431495-1431516|1431495-1431516|1431495-1431516|1431495-1431516|1431495-1431516|1431495-1431516|1431495-1431516|1431495-1431516|1431495-1431516|1431495-1431516|1431495-1431516|1431495-1431516|1431495-1431516|1431495-1431516|1431495-1431516|1431495-1431516|1431495-1431516|1431495-1431516|1431495-1431516|1431495-1431516|1431495-1431516|1431495-1431516|1431495-1431516|1431495-1431516|1431495-1431516|1431495-1431516|1431495-1431516|1431495-1431516|1431495-1431516|1431495-1431516|1431495-1431516|1431495-1431516|1431495-1431516|1431495-1431516|1431495-1431516|1431495-1431516|1431495-1431516|1431537-1431576|1431657-1431696|1431657-1431696|1431717-1431756|1431717-1431756|1432077-1432116|1432077-1432116|1432077-1432116|1432077-1432116|1432137-1432176|1432137-1432176|1432137-1432176|1432137-1432176|1432137-1432176|1432137-1432176|1432137-1432176|1432347-1432386|1432347-1432386|1432347-1432386|1432347-1432386|1432497-1432566|1432587-1432626|1432797-1432836|1432797-1432836|1432797-1432836|1432797-1432836|1432797-1432836|1432797-1432836|1432797-1432836|1433067-1433106|1433067-1433106|1433277-1433316|1433487-1433526|1433487-1433526|1433487-1433526|1433487-1433526|1433487-1433526|1433487-1433526|1433487-1433526|1433487-1433526|1433487-1433526|1433487-1433526|1433547-1433586|1433547-1433586|1433547-1433586|1433547-1433586|1433547-1433586|1433547-1433586|1433547-1433586|1433547-1433586|1433547-1433586|1433607-1433646|1433607-1433646|1433607-1433646|1433607-1433646|1433667-1433706|1433667-1433706|1433667-1433706|1433667-1433706|1433667-1433706|1433667-1433706|1433667-1433706|1433667-1433706|1433667-1433706|1433667-1433706|1433667-1433706|1433667-1433706|1433667-1433706|1433667-1433706|1433667-1433706|1433667-1433706|1433667-1433706|1433667-1433706|1433667-1433706|1434507-1434546|1434507-1434546|1434507-1434546|1434507-1434546|1434567-1434606|1434567-1434606|1434567-1434606|1434687-1434726|1434687-1434726|1434687-1434726|1434747-1434786|1434747-1434786|1434747-1434786|1434747-1434786|1434747-1434786|1434747-1434786|1434747-1434786|1434747-1434786|1434747-1434786|1434747-1434786|1434747-1434786	NZ_CP040854.1_307035-306996|NZ_CP040854.1_305475-305436|NZ_CP040854.1_307395-307356|NZ_CP040854.1_313335-313296|NZ_CP040854.1_312015-311976|NZ_CP040854.1_308475-308448|NZ_CP040854.1_308505-308478|NZ_CP040854.1_309615-309588|NZ_CP040854.1_309825-309798|NZ_CP040854.1_310485-310458|NZ_CP040854.1_310515-310488|NZ_CP040854.1_310575-310548|NZ_CP040854.1_310605-310578|NZ_CP040854.1_310995-310968|NZ_CP040854.1_311175-311148|NZ_CP040854.1_311715-311688|NZ_CP040854.1_312435-312408|NZ_CP040854.1_312465-312438|NZ_CP040854.1_305505-305478|NZ_CP040854.1_306225-306198|NZ_CP040854.1_307755-307728|NZ_CP040854.1_308595-308568|NZ_CP040854.1_309495-309468|NZ_CP040854.1_310695-310668|NZ_CP040854.1_311415-311388|NZ_CP040854.1_312015-311988|NZ_CP040854.1_312975-312948|NZ_CP040854.1_313275-313248|NZ_CP040854.1_306447-306426|NZ_CP040854.1_313377-313356|NZ_CP040854.1_305727-305706|NZ_CP040854.1_305817-305796|NZ_CP040854.1_305907-305886|NZ_CP040854.1_305997-305976|NZ_CP040854.1_307167-307146|NZ_CP040854.1_307227-307206|NZ_CP040854.1_307587-307566|NZ_CP040854.1_307647-307626|NZ_CP040854.1_307677-307656|NZ_CP040854.1_307977-307956|NZ_CP040854.1_308217-308196|NZ_CP040854.1_308427-308406|NZ_CP040854.1_308817-308796|NZ_CP040854.1_309387-309366|NZ_CP040854.1_309957-309936|NZ_CP040854.1_310197-310176|NZ_CP040854.1_310347-310326|NZ_CP040854.1_311307-311286|NZ_CP040854.1_311817-311796|NZ_CP040854.1_311907-311886|NZ_CP040854.1_312087-312066|NZ_CP040854.1_313287-313266|NZ_CP040854.1_305187-305166|NZ_CP040854.1_305937-305916|NZ_CP040854.1_306147-306126|NZ_CP040854.1_306477-306456|NZ_CP040854.1_306717-306696|NZ_CP040854.1_306777-306756|NZ_CP040854.1_306927-306906|NZ_CP040854.1_306987-306966|NZ_CP040854.1_307857-307836|NZ_CP040854.1_308517-308496|NZ_CP040854.1_308697-308676|NZ_CP040854.1_309177-309156|NZ_CP040854.1_309297-309276|NZ_CP040854.1_309507-309486|NZ_CP040854.1_309837-309816|NZ_CP040854.1_309867-309846|NZ_CP040854.1_310527-310506|NZ_CP040854.1_310617-310596|NZ_CP040854.1_310797-310776|NZ_CP040854.1_310857-310836|NZ_CP040854.1_311007-310986|NZ_CP040854.1_311187-311166|NZ_CP040854.1_311217-311196|NZ_CP040854.1_311577-311556|NZ_CP040854.1_311727-311706|NZ_CP040854.1_312057-312036|NZ_CP040854.1_312147-312126|NZ_CP040854.1_312927-312906|NZ_CP040854.1_313227-313206|NZ_CP040854.1_308385-308346|NZ_CP040854.1_306975-306936|NZ_CP040854.1_307305-307266|NZ_CP040854.1_308445-308406|NZ_CP040854.1_311835-311796|NZ_CP040854.1_305535-305496|NZ_CP040854.1_305175-305136|NZ_CP040854.1_305385-305346|NZ_CP040854.1_312555-312516|NZ_CP040854.1_311025-310986|NZ_CP040854.1_311745-311706|NZ_CP040854.1_306165-306126|NZ_CP040854.1_307245-307206|NZ_CP040854.1_309405-309366|NZ_CP040854.1_309975-309936|NZ_CP040854.1_311325-311286|NZ_CP040854.1_306585-306546|NZ_CP040854.1_312345-312306|NZ_CP040854.1_312765-312726|NZ_CP040854.1_313065-313026|NZ_CP040854.1_307065-306996|NZ_CP040854.1_309405-309366|NZ_CP040854.1_307785-307746|NZ_CP040854.1_308625-308586|NZ_CP040854.1_310725-310686|NZ_CP040854.1_311445-311406|NZ_CP040854.1_306735-306696|NZ_CP040854.1_306795-306756|NZ_CP040854.1_307095-307056|NZ_CP040854.1_308445-308406|NZ_CP040854.1_311835-311796|NZ_CP040854.1_310395-310356|NZ_CP040854.1_307245-307206|NZ_CP040854.1_307425-307386|NZ_CP040854.1_307815-307776|NZ_CP040854.1_308235-308196|NZ_CP040854.1_308655-308616|NZ_CP040854.1_309405-309366|NZ_CP040854.1_309975-309936|NZ_CP040854.1_310215-310176|NZ_CP040854.1_310365-310326|NZ_CP040854.1_311325-311286|NZ_CP040854.1_308235-308196|NZ_CP040854.1_310215-310176|NZ_CP040854.1_310365-310326|NZ_CP040854.1_306015-305976|NZ_CP040854.1_307725-307686|NZ_CP040854.1_308565-308526|NZ_CP040854.1_309225-309186|NZ_CP040854.1_310665-310626|NZ_CP040854.1_312105-312066|NZ_CP040854.1_305745-305706|NZ_CP040854.1_305835-305796|NZ_CP040854.1_306465-306426|NZ_CP040854.1_307665-307626|NZ_CP040854.1_305745-305706|NZ_CP040854.1_307875-307836|NZ_CP040854.1_308445-308406|NZ_CP040854.1_308535-308496|NZ_CP040854.1_308715-308676|NZ_CP040854.1_309195-309156|NZ_CP040854.1_310545-310506|NZ_CP040854.1_310635-310596|NZ_CP040854.1_310815-310776|NZ_CP040854.1_312075-312036|NZ_CP040854.1_306945-306906|NZ_CP040854.1_307635-307596|NZ_CP040854.1_307665-307626|NZ_CP040854.1_309315-309276|NZ_CP040854.1_309855-309816|NZ_CP040854.1_310005-309966|NZ_CP040854.1_311205-311166|NZ_CP040854.1_311355-311316|NZ_CP040854.1_312525-312486|NZ_CP040854.1_304965-304926|NZ_CP040854.1_307845-307806|NZ_CP040854.1_308685-308646|NZ_CP040854.1_309585-309546|NZ_CP040854.1_305595-305556|NZ_CP040854.1_305445-305406|NZ_CP040854.1_307965-307926|NZ_CP040854.1_305955-305916|NZ_CP040854.1_306465-306426|NZ_CP040854.1_307185-307146|NZ_CP040854.1_306555-306516|NZ_CP040854.1_309165-309126|NZ_CP040854.1_309285-309246|NZ_CP040854.1_305085-305046|NZ_CP040854.1_305715-305676|NZ_CP040854.1_306135-306096|NZ_CP040854.1_307365-307326|NZ_CP040854.1_307905-307866|NZ_CP040854.1_308745-308706|NZ_CP040854.1_309735-309696|NZ_CP040854.1_312585-312546	NA	75	75	Orphan	RT,cas2,cas3,cas14j,c2c9_V-U4,DEDDh,DinG,csa3,cas9,cas8e	NA,NA	NA|449aa|up_9|NZ_CP040854.1_1412679_1414026_-	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|228aa|up_8|NZ_CP040854.1_1414075_1414759_-	TIGR03732, lanti_perm_MutE, lantibiotic protection ABC transporter permease subunit, MutE/EpiE family	NA|235aa|up_7|NZ_CP040854.1_1414751_1415456_-	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter	NA|459aa|up_6|NZ_CP040854.1_1415815_1417192_+	TIGR00931, Uncharacterized_Na+/H+_antiporter_HI_1107, Na+/H+ antiporter NhaC	NA|238aa|up_5|NZ_CP040854.1_1418337_1419051_+	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins	NA|673aa|up_4|NZ_CP040854.1_1421151_1423170_-	TIGR03728, glyco_access_1, glycosyltransferase, SP_1767 family	NA|414aa|up_3|NZ_CP040854.1_1423279_1424521_-	cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	NA|629aa|up_2|NZ_CP040854.1_1424803_1426690_-	TIGR03728, glyco_access_1, glycosyltransferase, SP_1767 family	NA|350aa|up_1|NZ_CP040854.1_1426690_1427740_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|116aa|up_0|NZ_CP040854.1_1428296_1428644_-	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|272aa|down_0|NZ_CP040854.1_1439809_1440625_-	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|303aa|down_1|NZ_CP040854.1_1440883_1441792_-	PRK13055, PRK13055, putative lipid kinase; Reviewed	NA|477aa|down_2|NZ_CP040854.1_1441815_1443246_-	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA|480aa|down_3|NZ_CP040854.1_1443249_1444689_-	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA|101aa|down_4|NZ_CP040854.1_1444688_1444991_-	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA|380aa|down_5|NZ_CP040854.1_1445001_1446141_-	pfam07537, CamS, CamS sex pheromone cAM373 precursor	NA|669aa|down_6|NZ_CP040854.1_1446163_1448170_-	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated	NA|749aa|down_7|NZ_CP040854.1_1448208_1450455_-	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|209aa|down_8|NZ_CP040854.1_1450552_1451179_-	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]	NA|206aa|down_9|NZ_CP040854.1_1451180_1451798_-	COG4684, COG4684, Predicted membrane protein [Function unknown]
