assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_010668985.1_ASM1066898v1	NZ_CP048603	Escherichia coli strain ChlosBP-23-1 chromosome, complete genome	1	1575647-1575760	1	CRISPRCasFinder	no		cas3,PD-DExK,RT,csa3,WYL,DEDDh,DinG,cas14j	Orphan	TGCCGGATGCGCTTCGCTTATCCGGCCTACAAA	33	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,RT,csa3,WYL,DEDDh,DinG,cas14j	NA,NA	NA|62aa|up_9|NZ_CP048603.1_1565204_1565390_-	PRK09956, PRK09956, ISNCY family transposase	NA|320aa|up_8|NZ_CP048603.1_1565402_1566362_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_CP048603.1_1566554_1567745_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_CP048603.1_1567741_1569001_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_CP048603.1_1568990_1570619_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_CP048603.1_1570891_1572250_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_CP048603.1_1572254_1573331_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_CP048603.1_1573533_1574184_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP048603.1_1574237_1574492_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP048603.1_1574491_1575622_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP048603.1_1575811_1578097_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|241aa|down_1|NZ_CP048603.1_1582677_1583400_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_2|NZ_CP048603.1_1583546_1586174_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_3|NZ_CP048603.1_1586322_1588011_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_4|NZ_CP048603.1_1588007_1588631_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_5|NZ_CP048603.1_1588774_1593169_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_6|NZ_CP048603.1_1593169_1594819_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_7|NZ_CP048603.1_1594823_1595600_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_8|NZ_CP048603.1_1595673_1596858_-	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|441aa|down_9|NZ_CP048603.1_1596888_1598211_-	pfam02667, SCFA_trans, Short chain fatty acid transporter
GCF_010668985.1_ASM1066898v1	NZ_CP048603	Escherichia coli strain ChlosBP-23-1 chromosome, complete genome	2	2893028-2893119	2	CRISPRCasFinder	no		cas3,PD-DExK,RT,csa3,WYL,DEDDh,DinG,cas14j	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,RT,csa3,WYL,DEDDh,DinG,cas14j	NA|70aa|up_8|NZ_CP048603.1_2882815_2883025_-,NA	NA|503aa|up_9|NZ_CP048603.1_2881148_2882657_-	PRK15419, PRK15419, sodium/proline symporter PutP	NA|70aa|up_8|NZ_CP048603.1_2882815_2883025_-	NA	NA|1321aa|up_7|NZ_CP048603.1_2883079_2887042_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_6|NZ_CP048603.1_2887081_2887720_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_5|NZ_CP048603.1_2888007_2889099_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_4|NZ_CP048603.1_2889098_2889791_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_3|NZ_CP048603.1_2889802_2890189_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|288aa|up_2|NZ_CP048603.1_2890196_2891060_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP048603.1_2891070_2891565_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP048603.1_2891585_2892914_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP048603.1_2893542_2894139_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP048603.1_2894159_2894387_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP048603.1_2894424_2895666_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|307aa|down_3|NZ_CP048603.1_2896200_2897121_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_4|NZ_CP048603.1_2897120_2897426_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_5|NZ_CP048603.1_2897680_2898280_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_6|NZ_CP048603.1_2898276_2900823_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_7|NZ_CP048603.1_2900822_2901995_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_8|NZ_CP048603.1_2902124_2902817_+	PRK10766, PRK10766, two-component system response regulator TorR	NA|343aa|down_9|NZ_CP048603.1_2902789_2903818_-	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional
GCF_010668985.1_ASM1066898v1	NZ_CP048603	Escherichia coli strain ChlosBP-23-1 chromosome, complete genome	3	3014762-3014912	3,1	CRISPRCasFinder,PILER-CR	no		cas3,PD-DExK,RT,csa3,WYL,DEDDh,DinG,cas14j	Orphan	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAACTCA	28,31	0	0	NA	NA	I-F:I-F	2,2	2	Orphan	cas3,PD-DExK,RT,csa3,WYL,DEDDh,DinG,cas14j	NA,NA	NA|431aa|up_9|NZ_CP048603.1_2999751_3001044_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_CP048603.1_3001134_3002478_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_CP048603.1_3002488_3003100_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1374aa|up_6|NZ_CP048603.1_3003258_3007380_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_CP048603.1_3007514_3008009_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_CP048603.1_3008552_3009518_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_CP048603.1_3009640_3011407_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_CP048603.1_3011407_3013129_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_CP048603.1_3013170_3013875_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_CP048603.1_3014159_3014378_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|NZ_CP048603.1_3015121_3017398_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_CP048603.1_3017428_3017749_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_CP048603.1_3018071_3018296_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_CP048603.1_3018368_3020315_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_CP048603.1_3020311_3021427_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|319aa|down_5|NZ_CP048603.1_3021577_3022534_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_CP048603.1_3022530_3024189_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|NZ_CP048603.1_3024614_3025310_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|NZ_CP048603.1_3025629_3026529_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|NZ_CP048603.1_3026672_3028325_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCF_010668985.1_ASM1066898v1	NZ_CP048603	Escherichia coli strain ChlosBP-23-1 chromosome, complete genome	4	3547660-3547795	4	CRISPRCasFinder	no		cas3,PD-DExK,RT,csa3,WYL,DEDDh,DinG,cas14j	Orphan	GCGCCACTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC	43	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,RT,csa3,WYL,DEDDh,DinG,cas14j	NA|82aa|up_3|NZ_CP048603.1_3542936_3543182_-,NA	NA|484aa|up_9|NZ_CP048603.1_3536193_3537645_-	PRK09425, prpD, bifunctional 2-methylcitrate dehydratase/aconitate hydratase	NA|390aa|up_8|NZ_CP048603.1_3537678_3538848_-	PRK12351, PRK12351, methylcitrate synthase; Provisional	NA|297aa|up_7|NZ_CP048603.1_3539007_3539898_-	PRK11320, prpB, 2-methylisocitrate lyase; Provisional	NA|529aa|up_6|NZ_CP048603.1_3540136_3541723_+	PRK15424, PRK15424, propionate catabolism operon regulatory protein PrpR; Provisional	NA|92aa|up_5|NZ_CP048603.1_3541823_3542099_-	PRK09929, PRK09929, hypothetical protein; Provisional	NA|225aa|up_4|NZ_CP048603.1_3542245_3542920_+	TIGR00949, Uncharacterized_membrane_protein_YahN, The Resistance to Homoserine/Threonine (RhtB) Family protein	NA|82aa|up_3|NZ_CP048603.1_3542936_3543182_-	NA	NA|350aa|up_2|NZ_CP048603.1_3543803_3544853_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|461aa|up_1|NZ_CP048603.1_3545229_3546612_-	PRK06846, PRK06846, putative deaminase; Validated	NA|317aa|up_0|NZ_CP048603.1_3546621_3547572_-	PRK12352, PRK12352, putative carbamate kinase; Reviewed	NA|473aa|down_0|NZ_CP048603.1_3547818_3549237_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|516aa|down_1|NZ_CP048603.1_3549236_3550784_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|288aa|down_2|NZ_CP048603.1_3550773_3551637_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|202aa|down_3|NZ_CP048603.1_3551676_3552282_-	sd00045, ANK, ankyrin repeats	NA|176aa|down_4|NZ_CP048603.1_3552539_3553067_+	pfam06496, DUF1097, Protein of unknown function (DUF1097)	NA|311aa|down_5|NZ_CP048603.1_3553141_3554074_+	PRK10094, PRK10094, HTH-type transcriptional activator AllS	NA|363aa|down_6|NZ_CP048603.1_3554115_3555204_-	smart00052, EAL, Putative diguanylate phosphodiesterase	NA|678aa|down_7|NZ_CP048603.1_3556079_3558113_-	PRK09928, PRK09928, choline transport protein BetT; Provisional	NA|196aa|down_8|NZ_CP048603.1_3558241_3558829_+	PRK00767, PRK00767, transcriptional regulator BetI; Validated	NA|491aa|down_9|NZ_CP048603.1_3558842_3560315_+	PRK13252, PRK13252, betaine aldehyde dehydrogenase; Provisional
GCF_010668985.1_ASM1066898v1	NZ_CP048603	Escherichia coli strain ChlosBP-23-1 chromosome, complete genome	5	4067306-4067445	5	CRISPRCasFinder	no		cas3,PD-DExK,RT,csa3,WYL,DEDDh,DinG,cas14j	Orphan	TGTTATTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACACA	44	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,RT,csa3,WYL,DEDDh,DinG,cas14j	NA,NA	NA|340aa|up_9|NZ_CP048603.1_4055516_4056536_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|188aa|up_8|NZ_CP048603.1_4056539_4057103_-	PRK09825, idnK, gluconokinase	NA|344aa|up_7|NZ_CP048603.1_4057319_4058351_+	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|255aa|up_6|NZ_CP048603.1_4058374_4059139_+	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|440aa|up_5|NZ_CP048603.1_4059203_4060523_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|333aa|up_4|NZ_CP048603.1_4060589_4061588_+	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|501aa|up_3|NZ_CP048603.1_4061665_4063168_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|NZ_CP048603.1_4063328_4064411_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP048603.1_4064410_4065511_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP048603.1_4065777_4067289_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP048603.1_4067546_4067990_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP048603.1_4067989_4070845_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|396aa|down_2|NZ_CP048603.1_4070891_4072079_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|NZ_CP048603.1_4072271_4072775_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_4|NZ_CP048603.1_4072951_4073368_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_5|NZ_CP048603.1_4073529_4074534_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|151aa|down_6|NZ_CP048603.1_4074578_4075031_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|407aa|down_7|NZ_CP048603.1_4075708_4076929_+	PRK01388, PRK01388, arginine deiminase; Provisional	NA|315aa|down_8|NZ_CP048603.1_4076939_4077884_+	PRK12354, PRK12354, carbamate kinase; Reviewed	NA|335aa|down_9|NZ_CP048603.1_4077894_4078899_+	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated
GCF_010668985.1_ASM1066898v1	NZ_CP048603	Escherichia coli strain ChlosBP-23-1 chromosome, complete genome	6	4542629-4542760	6	CRISPRCasFinder	no		cas3,PD-DExK,RT,csa3,WYL,DEDDh,DinG,cas14j	Orphan	TGCCGGATGCGGCACAAGTGCCTTATCCGGCCTACAGGTC	40	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,RT,csa3,WYL,DEDDh,DinG,cas14j	NA,NA|93aa|down_9|NZ_CP048603.1_4553775_4554054_-	NA|233aa|up_9|NZ_CP048603.1_4531664_4532363_+	PRK10955, PRK10955, envelope stress response regulator transcription factor CpxR	NA|458aa|up_8|NZ_CP048603.1_4532359_4533733_+	PRK09470, cpxA, envelope stress sensor histidine kinase CpxA	NA|225aa|up_7|NZ_CP048603.1_4533904_4534579_-	PRK11536, PRK11536, 6-N-hydroxylaminopurine resistance protein; Provisional	NA|328aa|up_6|NZ_CP048603.1_4534727_4535711_-	TIGR00793, 2-keto-3-deoxygluconate_permease, 2-keto-3-deoxygluconate transporter	NA|207aa|up_5|NZ_CP048603.1_4535916_4536537_-	PRK10925, PRK10925, superoxide dismutase [Mn]	NA|345aa|up_4|NZ_CP048603.1_4536821_4537856_+	pfam06379, RhaT, L-rhamnose-proton symport protein (RhaT)	NA|313aa|up_3|NZ_CP048603.1_4537852_4538791_-	PRK13500, PRK13500, HTH-type transcriptional activator RhaR	NA|279aa|up_2|NZ_CP048603.1_4538774_4539611_-	PRK13503, PRK13503, HTH-type transcriptional activator RhaS	NA|490aa|up_1|NZ_CP048603.1_4539898_4541368_+	PRK10640, rhaB, rhamnulokinase; Provisional	NA|420aa|up_0|NZ_CP048603.1_4541364_4542624_+	PRK01076, PRK01076, L-rhamnose isomerase; Provisional	NA|275aa|down_0|NZ_CP048603.1_4542808_4543633_+	PRK03634, PRK03634, rhamnulose-1-phosphate aldolase; Provisional	NA|105aa|down_1|NZ_CP048603.1_4543642_4543957_+	TIGR02625, L-rhamnose_mutarotase, L-rhamnose mutarotase	NA|465aa|down_2|NZ_CP048603.1_4543997_4545392_-	pfam16966, Porin_8, Porin-like glycoporin RafY	NA|278aa|down_3|NZ_CP048603.1_4546387_4547221_-	PRK00724, PRK00724, formate dehydrogenase accessory sulfurtransferase FdhD	NA|1017aa|down_4|NZ_CP048603.1_4547414_4550465_+	TIGR01553, Formate_dehydrogenase_major_subunit, formate dehydrogenase-N alpha subunit	NA|301aa|down_5|NZ_CP048603.1_4550477_4551380_+	TIGR01582, Formate_dehydrogenase_iron-sulfur_subunit, formate dehydrogenase, beta subunit, Fe-S containing	NA|212aa|down_6|NZ_CP048603.1_4551376_4552012_+	PRK10639, PRK10639, formate dehydrogenase cytochrome b556 subunit	NA|310aa|down_7|NZ_CP048603.1_4552008_4552938_+	PRK03564, PRK03564, formate dehydrogenase accessory protein FdhE; Provisional	NA|73aa|down_8|NZ_CP048603.1_4553161_4553380_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|93aa|down_9|NZ_CP048603.1_4553775_4554054_-	NA
