assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_010669245.1_ASM1066924v1	NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	1	906354-906454	1	CRISPRCasFinder	no		cas3,DinG,WYL,csa3,DEDDh	Orphan	TGGTAAGATGTTGCCAAAAAGTGC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,WYL,csa3,DEDDh	NA|67aa|up_6|NZ_CP048686.1_900058_900259_-,NA|298aa|up_5|NZ_CP048686.1_900495_901389_-,NA|265aa|up_4|NZ_CP048686.1_901502_902297_-,NA|46aa|up_3|NZ_CP048686.1_902381_902519_-,NA|361aa|up_2|NZ_CP048686.1_902560_903643_-,NA|62aa|up_1|NZ_CP048686.1_903655_903841_-,NA|196aa|down_6|NZ_CP048686.1_916087_916675_+,NA|142aa|down_7|NZ_CP048686.1_916745_917171_+	NA|606aa|up_9|NZ_CP048686.1_897388_899206_-	COG4626, COG4626, Phage terminase-like protein, large subunit [General function prediction only]	NA|123aa|up_8|NZ_CP048686.1_899211_899580_-	pfam05119, Terminase_4, Phage terminase, small subunit	NA|107aa|up_7|NZ_CP048686.1_899738_900059_-	COG1403, McrA, Restriction endonuclease [Defense mechanisms]	NA|67aa|up_6|NZ_CP048686.1_900058_900259_-	NA	NA|298aa|up_5|NZ_CP048686.1_900495_901389_-	NA	NA|265aa|up_4|NZ_CP048686.1_901502_902297_-	NA	NA|46aa|up_3|NZ_CP048686.1_902381_902519_-	NA	NA|361aa|up_2|NZ_CP048686.1_902560_903643_-	NA	NA|62aa|up_1|NZ_CP048686.1_903655_903841_-	NA	NA|460aa|up_0|NZ_CP048686.1_904084_905464_-	pfam00665, rve, Integrase core domain	NA|205aa|down_0|NZ_CP048686.1_906588_907203_-	pfam14014, DUF4230, Protein of unknown function (DUF4230)	NA|316aa|down_1|NZ_CP048686.1_907305_908253_-	COG4974, XerD, Site-specific recombinase XerD [DNA replication, recombination, and repair]	NA|110aa|down_2|NZ_CP048686.1_908426_908756_-	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]	NA|480aa|down_3|NZ_CP048686.1_908922_910362_-	PRK12810, gltD, glutamate synthase subunit beta; Reviewed	NA|1501aa|down_4|NZ_CP048686.1_910363_914866_-	PRK11750, gltB, glutamate synthase subunit alpha; Provisional	NA|244aa|down_5|NZ_CP048686.1_915136_915868_-	COG1636, COG1636, Uncharacterized protein conserved in bacteria [Function unknown]	NA|196aa|down_6|NZ_CP048686.1_916087_916675_+	NA	NA|142aa|down_7|NZ_CP048686.1_916745_917171_+	NA	NA|706aa|down_8|NZ_CP048686.1_917273_919391_+	cd07552, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to Archaeoglobus fulgidus CopB, a Cu(2+)-ATPase	NA|333aa|down_9|NZ_CP048686.1_919543_920542_+	pfam05598, DUF772, Transposase domain (DUF772)
GCF_010669245.1_ASM1066924v1	NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2	1409697-1409830	2	CRISPRCasFinder	no		cas3,DinG,WYL,csa3,DEDDh	Orphan	TGGCAACTCCTTTAATGATGAGCGGGGAATCCGCGAA	37	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,WYL,csa3,DEDDh	NA|384aa|up_8|NZ_CP048686.1_1399351_1400503_-,NA|77aa|down_3|NZ_CP048686.1_1412422_1412653_+,NA|109aa|down_4|NZ_CP048686.1_1412728_1413055_-	NA|149aa|up_9|NZ_CP048686.1_1398880_1399327_-	pfam17802, SpaA, Prealbumin-like fold domain	NA|384aa|up_8|NZ_CP048686.1_1399351_1400503_-	NA	NA|317aa|up_7|NZ_CP048686.1_1400890_1401841_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|497aa|up_6|NZ_CP048686.1_1402169_1403660_+	pfam05043, Mga, Mga helix-turn-helix domain	NA|323aa|up_5|NZ_CP048686.1_1403741_1404710_-	cd04513, Glycosylasparaginase, Glycosylasparaginase and similar proteins	NA|448aa|up_4|NZ_CP048686.1_1404725_1406069_-	cd03888, M20_PepV, M20 Peptidase Xaa-His dipeptidase (PepV) degrades hydrophobic dipeptides	NA|243aa|up_3|NZ_CP048686.1_1406078_1406807_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|285aa|up_2|NZ_CP048686.1_1406825_1407680_-	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|211aa|up_1|NZ_CP048686.1_1407861_1408494_+	COG3142, CutC, Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]	NA|153aa|up_0|NZ_CP048686.1_1408561_1409020_-	pfam02502, LacAB_rpiB, Ribose/Galactose Isomerase	NA|342aa|down_0|NZ_CP048686.1_1410029_1411055_-	COG4473, EcsB, Predicted ABC-type exoprotein transport system, permease component [Intracellular trafficking and secretion]	NA|248aa|down_1|NZ_CP048686.1_1411047_1411791_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|134aa|down_2|NZ_CP048686.1_1411870_1412272_+	cd01277, HINT_subgroup, HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides	NA|77aa|down_3|NZ_CP048686.1_1412422_1412653_+	NA	NA|109aa|down_4|NZ_CP048686.1_1412728_1413055_-	NA	NA|460aa|down_5|NZ_CP048686.1_1413286_1414666_+	pfam00665, rve, Integrase core domain	NA|229aa|down_6|NZ_CP048686.1_1415114_1415801_-	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|142aa|down_7|NZ_CP048686.1_1415973_1416399_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|70aa|down_8|NZ_CP048686.1_1416640_1416850_-	PRK13672, PRK13672, hypothetical protein; Provisional	NA|174aa|down_9|NZ_CP048686.1_1416846_1417368_-	PRK14054, PRK14054, peptide-methionine (S)-S-oxide reductase
GCF_010669245.1_ASM1066924v1	NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	3	1527053-1527201	3	CRISPRCasFinder	no		cas3,DinG,WYL,csa3,DEDDh	Orphan	CTTGAAACTTGACTTCCGCTTGCGCTCCTGCCAAGCAGGGTCATTCGCGATCTTC	55	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,WYL,csa3,DEDDh	NA,NA|81aa|down_2|NZ_CP048686.1_1529943_1530186_-,NA|77aa|down_3|NZ_CP048686.1_1530189_1530420_-	NA|66aa|up_9|NZ_CP048686.1_1517826_1518024_+	pfam05532, CsbD, CsbD-like	NA|133aa|up_8|NZ_CP048686.1_1518524_1518923_-	PRK01655, spxA, transcriptional regulator Spx; Reviewed	NA|391aa|up_7|NZ_CP048686.1_1519102_1520275_-	PRK09354, recA, recombinase A; Provisional	NA|278aa|up_6|NZ_CP048686.1_1520395_1521229_-	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|478aa|up_5|NZ_CP048686.1_1521329_1522763_+	PRK14022, PRK14022, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase	NA|147aa|up_4|NZ_CP048686.1_1523176_1523617_-	pfam08837, DUF1810, Protein of unknown function (DUF1810)	NA|287aa|up_3|NZ_CP048686.1_1523805_1524666_+	PRK00114, hslO, Hsp33 family molecular chaperone HslO	NA|330aa|up_2|NZ_CP048686.1_1524667_1525657_+	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|35aa|up_1|NZ_CP048686.1_1525896_1526001_+	pfam16935, Hol_Tox, Putative Holin-like Toxin (Hol-Tox)	NA|289aa|up_0|NZ_CP048686.1_1526146_1527013_-	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|306aa|down_0|NZ_CP048686.1_1527293_1528211_-	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|581aa|down_1|NZ_CP048686.1_1528177_1529920_-	PRK00476, aspS, aspartyl-tRNA synthetase; Validated	NA|81aa|down_2|NZ_CP048686.1_1529943_1530186_-	NA	NA|77aa|down_3|NZ_CP048686.1_1530189_1530420_-	NA	NA|429aa|down_4|NZ_CP048686.1_1530416_1531703_-	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed	NA|186aa|down_5|NZ_CP048686.1_1532102_1532660_-	TIGR00560, pgsA, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA|290aa|down_6|NZ_CP048686.1_1532667_1533537_-	COG1426, COG1426, Predicted transcriptional regulator contains Xre-like HTH domain [Function unknown]	NA|428aa|down_7|NZ_CP048686.1_1533610_1534894_-	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|421aa|down_8|NZ_CP048686.1_1534883_1536146_-	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|133aa|down_9|NZ_CP048686.1_1536384_1536783_+	COG2501, COG2501, S4-like RNA binding protein [Replication, recombination, and repair]
GCF_010669245.1_ASM1066924v1	NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	4	2229979-2230088	4	CRISPRCasFinder	no		cas3,DinG,WYL,csa3,DEDDh	Orphan	GACTTCGTTAGATTTCAGCTCACAA	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,WYL,csa3,DEDDh	NA,NA	NA|257aa|up_9|NZ_CP048686.1_2221472_2222243_+	TIGR00186, Uncharacterized_tRNA/rRNA_methyltransferase_MG252, rRNA methylase, putative, group 3	NA|171aa|up_8|NZ_CP048686.1_2222259_2222772_+	pfam05991, NYN_YacP, YacP-like NYN domain	NA|290aa|up_7|NZ_CP048686.1_2222823_2223693_+	TIGR00762, DegV, EDD domain protein, DegV family	NA|457aa|up_6|NZ_CP048686.1_2223855_2225226_+	COG0849, ftsA, Cell division ATPase FtsA [Cell division and chromosome partitioning]	NA|422aa|up_5|NZ_CP048686.1_2225366_2226632_+	PRK09330, PRK09330, cell division protein FtsZ; Validated	NA|221aa|up_4|NZ_CP048686.1_2226635_2227298_+	COG0325, COG0325, Predicted enzyme with a TIM-barrel fold [General function prediction only]	NA|183aa|up_3|NZ_CP048686.1_2227347_2227896_+	COG1799, COG1799, Uncharacterized protein conserved in bacteria [Function unknown]	NA|82aa|up_2|NZ_CP048686.1_2227895_2228141_+	pfam02325, YGGT, YGGT family	NA|266aa|up_1|NZ_CP048686.1_2228140_2228938_+	COG2302, COG2302, Uncharacterized conserved protein, contains S4-like domain [Function unknown]	NA|238aa|up_0|NZ_CP048686.1_2229042_2229756_+	pfam05103, DivIVA, DivIVA protein	NA|933aa|down_0|NZ_CP048686.1_2230271_2233070_+	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|411aa|down_1|NZ_CP048686.1_2233240_2234473_+	COG3595, COG3595, Uncharacterized conserved protein [Function unknown]	NA|108aa|down_2|NZ_CP048686.1_2234465_2234789_+	COG1983, PspC, Putative stress-responsive transcriptional regulator [Transcription / Signal transduction mechanisms]	NA|308aa|down_3|NZ_CP048686.1_2235011_2235935_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|266aa|down_4|NZ_CP048686.1_2235936_2236734_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|133aa|down_5|NZ_CP048686.1_2236851_2237250_+	COG4768, COG4768, Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]	NA|198aa|down_6|NZ_CP048686.1_2237334_2237928_+	pfam12732, YtxH, YtxH-like protein	NA|56aa|down_7|NZ_CP048686.1_2238046_2238214_-	pfam11240, DUF3042, Protein of unknown function (DUF3042)	NA|96aa|down_8|NZ_CP048686.1_2238585_2238873_+	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|104aa|down_9|NZ_CP048686.1_2238872_2239184_+	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein
GCF_010669245.1_ASM1066924v1	NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	5	2254678-2254804	5	CRISPRCasFinder	no		cas3,DinG,WYL,csa3,DEDDh	Orphan	TAGTAGGCGATGATATGAGCCACAATTCTTACTTTTCTTTT	41	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,WYL,csa3,DEDDh	NA|273aa|up_1|NZ_CP048686.1_2249999_2250818_-,NA|956aa|up_0|NZ_CP048686.1_2251320_2254188_+,NA|83aa|down_6|NZ_CP048686.1_2262454_2262703_+,NA|104aa|down_7|NZ_CP048686.1_2262826_2263138_+,NA|177aa|down_8|NZ_CP048686.1_2263137_2263668_+	NA|104aa|up_9|NZ_CP048686.1_2238872_2239184_+	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|554aa|up_8|NZ_CP048686.1_2239184_2240846_+	TIGR03385, Coenzyme_A_disulfide_reductase, CoA-disulfide reductase	NA|821aa|up_7|NZ_CP048686.1_2240871_2243334_+	TIGR03385, Coenzyme_A_disulfide_reductase, CoA-disulfide reductase	NA|84aa|up_6|NZ_CP048686.1_2243588_2243840_+	cd10155, BsYrkD-like_DUF156, Uncharacterized protein YrkD from Bacillus subtilis and related domains; this domain superfamily was previously known as part of DUF156	NA|224aa|up_5|NZ_CP048686.1_2244097_2244769_-	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]	NA|486aa|up_4|NZ_CP048686.1_2244781_2246239_-	COG0168, TrkG, Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	NA|265aa|up_3|NZ_CP048686.1_2247742_2248537_+	pfam14355, Abi_C, Abortive infection C-terminus	NA|377aa|up_2|NZ_CP048686.1_2248876_2250007_-	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]	NA|273aa|up_1|NZ_CP048686.1_2249999_2250818_-	NA	NA|956aa|up_0|NZ_CP048686.1_2251320_2254188_+	NA	NA|497aa|down_0|NZ_CP048686.1_2256100_2257591_-	cd00583, MutH_Sau3AI, MutH is a 28kD endonuclease involved in methyl-directed DNA mismatch repair in gram negative bacteria	NA|421aa|down_1|NZ_CP048686.1_2257710_2258973_+	TIGR00675, Modification_methylase, DNA-methyltransferase (dcm)	NA|122aa|down_2|NZ_CP048686.1_2259599_2259965_-	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|114aa|down_3|NZ_CP048686.1_2260022_2260364_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|103aa|down_4|NZ_CP048686.1_2261393_2261702_+	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family	NA|115aa|down_5|NZ_CP048686.1_2261694_2262039_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|83aa|down_6|NZ_CP048686.1_2262454_2262703_+	NA	NA|104aa|down_7|NZ_CP048686.1_2262826_2263138_+	NA	NA|177aa|down_8|NZ_CP048686.1_2263137_2263668_+	NA	NA|530aa|down_9|NZ_CP048686.1_2263695_2265285_+	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]
