The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	0	8073	2295672		Streptococcus_phage(50.0%)	5	NA	NA
WP_061774868.1|1302_1854_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_061774869.1|2084_3410_+	phosphopyruvate hydratase	NA	A0A1X9I5Z8	Streptococcus_phage	81.2	9.4e-198
WP_061774870.1|3509_4634_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061774871.1|4657_5572_+	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
WP_061774872.1|5772_8073_+	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	32.9	1.2e-115
>prophage 2
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	18624	26268	2295672	transposase	Bacillus_phage(40.0%)	8	NA	NA
WP_061775560.1|18624_19572_+|transposase	IS30 family transposase	transposase	H7BVY4	unidentified_phage	32.7	5.8e-32
WP_061775204.1|19741_21202_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061775222.1|21343_21634_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_082785431.1|22110_22230_+	DUF4044 domain-containing protein	NA	NA	NA	NA	NA
WP_061775205.1|22258_23065_-	MBL fold metallo-hydrolase	NA	A0A2H4J3R0	uncultured_Caudovirales_phage	38.0	3.9e-37
WP_061775206.1|23148_24591_-	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	33.3	7.0e-37
WP_061775207.1|24580_25288_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	38.3	3.7e-39
WP_061775208.1|25527_26268_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.8	2.0e-35
>prophage 3
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	29373	35709	2295672		Streptococcus_phage(83.33%)	8	NA	NA
WP_061775213.1|29373_30021_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	60.0	7.6e-68
WP_061775214.1|30007_30871_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	47.1	2.8e-65
WP_061775215.1|30913_31684_+	stage 0 sporulation family protein	NA	NA	NA	NA	NA
WP_096040505.1|31695_32022_+	DUF972 family protein	NA	M1PFV3	Streptococcus_phage	41.9	4.4e-16
WP_082785432.1|32018_32882_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	67.6	2.1e-97
WP_061775224.1|33005_33842_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_061775217.1|34037_34649_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	57.1	4.0e-66
WP_061775218.1|34782_35709_-	cysteine synthase A	NA	A0A1X9I5K7	Streptococcus_phage	73.9	6.3e-124
>prophage 4
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	39155	98233	2295672	terminase,tRNA,integrase,protease,transposase	Planktothrix_phage(13.33%)	60	53541:53556	96427:96442
WP_061775221.1|39155_39752_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	55.0	1.3e-53
WP_138492594.1|39906_41286_-|transposase	ISNCY family transposase	transposase	NA	NA	NA	NA
WP_061774140.1|41439_41817_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061774139.1|41797_42136_+	YlbG family protein	NA	NA	NA	NA	NA
WP_163604755.1|42132_42660_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061774137.1|42950_43541_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_061774148.1|43737_43944_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061774146.1|44459_45137_+	GTP pyrophosphokinase family protein	NA	F8K9M7	Nitrososphaera_phage	28.8	2.4e-08
WP_061774147.1|45117_45936_+	NAD kinase	NA	NA	NA	NA	NA
WP_061774136.1|45932_46835_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_061774135.1|47271_48633_+	magnesium transporter	NA	NA	NA	NA	NA
WP_061774134.1|48839_49697_+	Rgg/GadR/MutR family transcriptional regulator	NA	NA	NA	NA	NA
WP_144259873.1|50148_50247_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_144259875.1|50554_50854_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061774133.1|51596_52103_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061774132.1|52230_52866_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_061774131.1|52874_53510_+	amino acid ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.1	3.2e-26
53541:53556	attL	ATGAGAGATATGAAAT	NA	NA	NA	NA
WP_061774130.1|53549_54368_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_061774129.1|54510_55689_+	TPM domain-containing protein	NA	NA	NA	NA	NA
WP_061774128.1|56104_57670_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_061774127.1|57703_58741_+	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_061774126.1|58740_59031_+	DUF1294 domain-containing protein	NA	NA	NA	NA	NA
WP_061774125.1|59044_60418_+	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_061774124.1|60417_61008_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_061774123.1|61284_61809_+	NAD(P)H-dependent oxidoreductase subunit E	NA	NA	NA	NA	NA
WP_096824028.1|61920_63735_+	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA	NA
WP_061774122.1|63749_65492_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_144259872.1|65966_66524_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_061774120.1|66575_67016_+	flavodoxin	NA	NA	NA	NA	NA
WP_061774119.1|67087_70630_+	pyruvate:ferredoxin (flavodoxin) oxidoreductase	NA	NA	NA	NA	NA
WP_061774118.1|70738_72079_+	DEAD/DEAH box helicase	NA	A0A0N9Q9J4	Chrysochromulina_ericina_virus	27.1	5.9e-46
WP_061774117.1|72362_72608_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061774116.1|72585_73113_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061774115.1|73113_76443_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_061774114.1|76616_77747_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	30.1	6.5e-22
WP_061774113.1|77865_78234_+	DUF4430 domain-containing protein	NA	NA	NA	NA	NA
WP_061774112.1|78292_78979_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_061774111.1|78975_79713_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	43.0	6.5e-39
WP_061774110.1|79832_80498_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061774109.1|80643_81339_+	noncanonical pyrimidine nucleotidase, YjjG family	NA	NA	NA	NA	NA
WP_061774108.1|81534_82707_+	undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	NA	NA	NA	NA	NA
WP_003138658.1|82784_83555_+	Fe-S cluster assembly ATPase SufC	NA	A0A1V0SE00	Indivirus	24.3	8.9e-07
WP_061774107.1|83568_84831_+	Fe-S cluster assembly protein SufD	NA	NA	NA	NA	NA
WP_061774106.1|84879_86103_+	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	45.1	1.3e-108
WP_061774105.1|86166_86640_+	SUF system NifU family Fe-S cluster assembly protein	NA	V5R992	Mycobacterium_phage	36.3	3.9e-13
WP_061774104.1|86640_87939_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	NA	NA	NA	NA
WP_061774103.1|87985_89404_+	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
WP_061774102.1|89500_90652_-|integrase	site-specific integrase	integrase	A0A1S5S7K9	Streptococcus_phage	33.3	1.1e-53
WP_082785363.1|90669_91152_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_061774101.1|91289_91490_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_061774100.1|91530_91803_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061774099.1|91818_92031_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061774098.1|92162_92561_+	hypothetical protein	NA	Q9AZF1	Lactococcus_phage	55.4	4.6e-39
WP_061774097.1|92571_93354_+	hypothetical protein	NA	Q9AZI6	Lactococcus_phage	66.3	5.2e-103
WP_061774096.1|93364_94774_+	DNA primase	NA	A0A0M4RE09	Enterococcus_phage	33.6	1.4e-34
WP_061774095.1|95071_95308_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061774094.1|95304_95697_+	endonuclease	NA	A0A1J0MFT4	Staphylococcus_phage	38.2	3.7e-17
WP_156470215.1|95844_95985_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061774093.1|96072_96555_+|terminase	phage terminase small subunit P27 family	terminase	NA	NA	NA	NA
96427:96442	attR	ATGAGAGATATGAAAT	NA	NA	NA	NA
WP_061774092.1|96547_98233_+|terminase	terminase large subunit	terminase	M1PRR5	Streptococcus_phage	41.7	2.0e-120
>prophage 5
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	109249	110947	2295672		Bacteriophage(100.0%)	1	NA	NA
WP_061774081.1|109249_110947_-	ribonuclease J	NA	A0A0C5AJ83	Bacteriophage	24.4	3.7e-05
>prophage 6
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	114964	115981	2295672	tRNA	Moraxella_phage(100.0%)	1	NA	NA
WP_061774077.1|114964_115981_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	42.3	9.8e-62
>prophage 7
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	121142	132767	2295672		Bacillus_phage(28.57%)	11	NA	NA
WP_061774071.1|121142_122354_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	35.4	1.6e-18
WP_061774070.1|122356_123757_+	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	34.8	1.8e-05
WP_082785359.1|123753_124176_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	34.8	2.9e-07
WP_061774068.1|124297_125809_+	ABC transporter ATP-binding protein	NA	F2Y165	Organic_Lake_phycodnavirus	22.2	3.1e-11
WP_061774067.1|125820_126708_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_061774066.1|126731_127385_+	ATP-binding cassette domain-containing protein	NA	W8CYL7	Bacillus_phage	31.3	1.5e-10
WP_144259874.1|127482_127719_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_061774062.1|128668_129601_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_061774061.1|129746_131450_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	68.7	7.6e-224
WP_061774142.1|131556_132072_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_061774060.1|132215_132767_-	phosphopantothenoylcysteine decarboxylase	NA	Q9J5A8	Fowlpox_virus	34.6	2.0e-21
>prophage 8
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	137741	153995	2295672	tRNA,transposase	Streptococcus_phage(57.14%)	16	NA	NA
WP_001015311.1|137741_138422_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	1.5e-127
WP_061775466.1|138687_139326_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_061775467.1|139351_140536_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_061775468.1|140532_141255_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.7	1.2e-24
WP_031367084.1|141437_142016_+	uracil-DNA glycosylase family protein	NA	NA	NA	NA	NA
WP_031367083.1|142283_144134_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	35.7	1.1e-103
WP_082785451.1|144210_144441_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_031367081.1|144458_144737_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031367080.1|144764_145418_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_163604834.1|146256_147135_+|transposase	IS3 family transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	44.1	1.2e-31
WP_061774977.1|147222_147861_-	MBL fold metallo-hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	54.5	9.9e-60
WP_061774976.1|148007_150356_+	DEAD/DEAH box helicase	NA	A0A1X9I5C8	Streptococcus_phage	39.1	3.2e-140
WP_061774975.1|150380_150788_+	DUF5590 domain-containg protein	NA	NA	NA	NA	NA
WP_061774974.1|150964_152143_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_061774973.1|152170_152536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061774972.1|152657_153995_+|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	31.7	1.3e-61
>prophage 9
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	159424	162250	2295672		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_061774965.1|159424_162250_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	55.3	2.2e-300
>prophage 10
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	182355	183291	2295672	transposase	unidentified_phage(100.0%)	1	NA	NA
WP_163604835.1|182355_183291_+|transposase	IS30 family transposase	transposase	H7BUM7	unidentified_phage	36.2	1.0e-36
>prophage 11
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	194541	202464	2295672		Staphylococcus_phage(33.33%)	6	NA	NA
WP_061775106.1|194541_195948_+	Cof-type HAD-IIB family hydrolase	NA	A0A0N9SIY2	Staphylococcus_phage	41.2	3.5e-25
WP_061775107.1|195998_197351_-	aspartate kinase	NA	NA	NA	NA	NA
WP_061775108.1|197548_198190_+	HAD family phosphatase	NA	A7J6N1	Paramecium_bursaria_Chlorella_virus	26.8	6.1e-09
WP_061775109.1|198334_200302_+	RecJ-like protein	NA	NA	NA	NA	NA
WP_061775110.1|200649_201102_+	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_061775111.1|201102_202464_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	55.6	4.2e-132
>prophage 12
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	206078	206960	2295672		Lactococcus_phage(100.0%)	1	NA	NA
WP_061775119.1|206078_206960_+	primosomal protein DnaI	NA	R9QM21	Lactococcus_phage	29.9	3.7e-25
>prophage 13
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	215260	223701	2295672		Bodo_saltans_virus(33.33%)	6	NA	NA
WP_061775315.1|215260_217927_+	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	24.3	4.6e-18
WP_061775316.1|218021_218372_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_061775317.1|218388_219288_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061775318.1|219447_220770_+	MATE family efflux transporter	NA	NA	NA	NA	NA
WP_061775319.1|220735_222703_+	NAD-dependent DNA ligase LigA	NA	A0A0A8J9A9	Ralstonia_phage	33.7	1.8e-96
WP_061775320.1|222699_223701_+	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	28.4	4.6e-19
>prophage 14
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	231536	237761	2295672		Synechococcus_phage(66.67%)	3	NA	NA
WP_061775389.1|231536_233390_+	DNA primase	NA	A0A1S5RFR1	Helicobacter_phage	34.6	2.5e-47
WP_082785445.1|233392_234523_+	RNA polymerase sigma factor RpoD	NA	F4YCU2	Synechococcus_phage	37.9	1.1e-37
WP_061775388.1|237140_237761_-	peptide deformylase	NA	E3SLL2	Synechococcus_phage	37.3	4.4e-12
>prophage 15
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	246932	255351	2295672	tRNA	Streptococcus_phage(80.0%)	7	NA	NA
WP_061774994.1|246932_248030_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	73.1	5.3e-154
WP_061774993.1|248105_249287_+	phosphoglycerate dehydrogenase	NA	M1NSB9	Streptococcus_phage	75.8	2.8e-169
WP_061774992.1|249283_249640_+	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	63.8	1.6e-35
WP_061774998.1|249938_250766_-	exodeoxyribonuclease III	NA	M1PSC0	Streptococcus_phage	75.1	7.9e-118
WP_156470230.1|250892_251048_-	hypothetical protein	NA	NA	NA	NA	NA
WP_144259892.1|251396_253223_+	Cna B-type domain-containing protein	NA	NA	NA	NA	NA
WP_061774990.1|253338_255351_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	37.4	5.1e-94
>prophage 16
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	261326	266737	2295672		Bacteroides_phage(33.33%)	3	NA	NA
WP_061774985.1|261326_261932_+	master DNA invertase Mpi family serine-type recombinase	NA	H2A0H0	Bacteroides_phage	55.2	1.2e-46
WP_061774984.1|261918_265362_+	DNA helicase	NA	A0A2K5B253	Erysipelothrix_phage	24.3	1.4e-30
WP_061774983.1|266017_266737_+	ribonuclease III	NA	A0A2K9L8W0	Tupanvirus	31.2	1.4e-22
>prophage 17
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	272534	278218	2295672	tRNA,transposase	Hokovirus(33.33%)	4	NA	NA
WP_061774997.1|272534_273518_+	ribose-phosphate diphosphokinase	NA	A0A1V0SHF7	Hokovirus	33.6	6.0e-48
WP_144259893.1|273546_274293_+	polyketide synthase regulator	NA	NA	NA	NA	NA
WP_061774978.1|274366_276862_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	64.3	0.0e+00
WP_163604757.1|276964_278218_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	35.7	1.7e-63
>prophage 18
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	281567	286034	2295672		Planktothrix_phage(50.0%)	2	NA	NA
WP_061773806.1|281567_284123_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.9	2.3e-30
WP_061773807.1|284234_286034_+	DNA helicase RecQ	NA	A0A2K9L3P7	Tupanvirus	34.4	2.1e-70
>prophage 19
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	291515	297148	2295672		uncultured_virus(50.0%)	4	NA	NA
WP_061773813.1|291515_293618_+	cadmium-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	35.2	1.3e-95
WP_061773814.1|293740_294982_+	FtsW/RodA/SpoVE family cell cycle protein	NA	NA	NA	NA	NA
WP_040525803.1|295090_295393_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_061773815.1|295654_297148_+	ABC-F type ribosomal protection protein	NA	A0A1B0RXA0	Streptococcus_phage	25.6	3.3e-29
>prophage 20
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	300780	302718	2295672		Bacillus_virus(100.0%)	1	NA	NA
WP_163604838.1|300780_302718_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	46.4	6.7e-144
>prophage 21
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	323269	323809	2295672		Streptococcus_phage(100.0%)	1	NA	NA
WP_061773942.1|323269_323809_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	45.9	1.1e-32
>prophage 22
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	330299	331568	2295672	tRNA	uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_061773848.1|330299_331568_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	46.0	2.5e-94
>prophage 23
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	335259	336156	2295672		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_061773853.1|335259_336156_+	LysR family transcriptional regulator	NA	A0A2H4J8I9	uncultured_Caudovirales_phage	33.7	1.5e-05
>prophage 24
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	355641	371781	2295672		Enterobacteria_phage(14.29%)	16	NA	NA
WP_061773870.1|355641_356616_+	LacI family transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	30.6	9.2e-17
WP_061773871.1|356734_357406_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	34.8	1.2e-26
WP_061773872.1|357442_358798_+	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	28.1	5.4e-15
WP_061773943.1|358855_359107_+	membrane protein insertion efficiency factor YidD	NA	NA	NA	NA	NA
WP_061773873.1|359266_360334_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_061773874.1|360347_361016_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.3	6.3e-33
WP_061773875.1|361362_361623_+	acyltransferase family protein	NA	NA	NA	NA	NA
WP_061773877.1|361931_362450_+	hypothetical protein	NA	NA	NA	NA	NA
WP_082785344.1|362744_363839_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	30.4	2.2e-30
WP_061773879.1|363819_364815_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_061773880.1|364863_365571_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061773881.1|365570_366635_-	ATP-binding cassette domain-containing protein	NA	NA	NA	NA	NA
WP_061773882.1|366688_367315_+	uridine kinase	NA	A0A2K9L178	Tupanvirus	39.8	5.3e-34
WP_061773883.1|367390_368374_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_061773884.1|368595_369384_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_096824021.1|369423_371781_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	49.9	3.6e-83
>prophage 25
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	389161	392702	2295672		Enterobacteria_phage(33.33%)	3	NA	NA
WP_061773897.1|389161_390442_+	uracil permease	NA	Q9KX94	Enterobacteria_phage	34.4	2.1e-61
WP_061773899.1|390599_391529_+	aspartate carbamoyltransferase catalytic subunit	NA	M1HQL8	Paramecium_bursaria_Chlorella_virus	32.5	2.1e-26
WP_061773900.1|391613_392702_+	carbamoyl phosphate synthase small subunit	NA	R4TGJ8	Halovirus	34.6	8.6e-56
>prophage 26
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	396096	397893	2295672		Streptococcus_phage(100.0%)	1	NA	NA
WP_061773902.1|396096_397893_+	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	32.0	1.6e-67
>prophage 27
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	404671	405394	2295672		Synechococcus_phage(100.0%)	1	NA	NA
WP_061773908.1|404671_405394_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	G8EYA2	Synechococcus_phage	39.7	8.6e-44
>prophage 28
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	410380	418595	2295672		Phaeocystis_globosa_virus(25.0%)	8	NA	NA
WP_061773911.1|410380_411133_-	ATP-binding cassette domain-containing protein	NA	R4TX06	Phaeocystis_globosa_virus	27.1	3.9e-07
WP_061773912.1|411129_412086_-	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA	NA
WP_061773913.1|412086_413043_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4IY97	uncultured_Caudovirales_phage	45.5	2.9e-71
WP_061773914.1|413328_414009_+	JAB domain-containing protein	NA	NA	NA	NA	NA
WP_061773915.1|414057_414765_-	gamma-glutamyl-gamma-aminobutyrate hydrolase family protein	NA	NA	NA	NA	NA
WP_061773916.1|414761_415427_-	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
WP_061773917.1|415545_417456_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	29.7	4.6e-52
WP_061773918.1|417461_418595_+	UDP-galactopyranose mutase	NA	E4ZFQ1	Streptococcus_phage	62.2	5.2e-136
>prophage 29
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	427427	428138	2295672		Faecalibacterium_phage(100.0%)	1	NA	NA
WP_061773926.1|427427_428138_+	DnaD domain-containing protein	NA	A0A2K9V472	Faecalibacterium_phage	34.7	2.0e-05
>prophage 30
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	432234	446367	2295672	transposase	Streptococcus_phage(37.5%)	14	NA	NA
WP_061773933.1|432234_433554_-	HD domain-containing protein	NA	A0A1B1ISR1	uncultured_Mediterranean_phage	35.0	1.5e-30
WP_061773934.1|433916_434870_+	thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha	NA	NA	NA	NA	NA
WP_082785347.1|434862_435819_+	alpha-ketoacid dehydrogenase subunit beta	NA	NA	NA	NA	NA
WP_061773936.1|435819_436197_+	DUF1934 domain-containing protein	NA	NA	NA	NA	NA
WP_061773937.1|436347_437370_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	39.1	1.8e-55
WP_061773938.1|437366_437915_+	phosphoribosylglycinamide formyltransferase	NA	E3SNR5	Prochlorococcus_phage	39.7	2.0e-29
WP_163604760.1|438048_439302_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	35.7	2.9e-63
WP_061775557.1|439428_439950_+	hypothetical protein	NA	A0A097BYE2	Leuconostoc_phage	38.6	1.2e-26
WP_163604757.1|440573_441827_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	35.7	1.7e-63
WP_061775181.1|441937_442738_-	hypothetical protein	NA	E4ZFP8	Streptococcus_phage	33.8	2.4e-31
WP_061775182.1|442784_443132_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061775183.1|443128_443452_-	hypothetical protein	NA	NA	NA	NA	NA
WP_163604839.1|443663_445118_+	cardiolipin synthase	NA	NA	NA	NA	NA
WP_061775185.1|445380_446367_+	GMP reductase	NA	G3MBI2	Bacillus_virus	77.0	4.5e-144
>prophage 31
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	452600	456888	2295672	tRNA	unidentified_phage(33.33%)	4	NA	NA
WP_061775193.1|452600_453815_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	48.5	2.3e-41
WP_061775203.1|453807_455685_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	28.1	2.7e-49
WP_061775194.1|455685_456036_+	DUF2200 domain-containing protein	NA	NA	NA	NA	NA
WP_061775195.1|456048_456888_+	thymidylate synthase	NA	U5J9N5	Bacillus_phage	55.0	4.0e-85
>prophage 32
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	464531	465482	2295672	transposase	unidentified_phage(100.0%)	1	NA	NA
WP_163604762.1|464531_465482_-|transposase	IS30 family transposase	transposase	H7BWC8	unidentified_phage	33.7	4.8e-34
>prophage 33
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	474302	480157	2295672		Streptococcus_phage(75.0%)	5	NA	NA
WP_061774824.1|474302_475049_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.0	1.9e-33
WP_061774825.1|475045_475816_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_061774826.1|475960_478126_-	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	57.7	2.4e-219
WP_061774827.1|478366_479503_+	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	57.4	3.7e-118
WP_061774828.1|479506_480157_+	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	41.6	5.4e-37
>prophage 34
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	491704	494405	2295672		uncultured_virus(50.0%)	3	NA	NA
WP_061774835.1|491704_492874_+	cobalamin-independent methionine synthase II family protein	NA	A0A218MNE0	uncultured_virus	32.5	3.0e-46
WP_061774836.1|493037_493496_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_061774837.1|493499_494405_+	YafY family transcriptional regulator	NA	A0A1B0RXM1	Streptococcus_phage	28.1	4.1e-11
>prophage 35
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	498070	499045	2295672		Bacillus_virus(100.0%)	1	NA	NA
WP_061774843.1|498070_499045_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	30.4	3.6e-21
>prophage 36
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	507527	508694	2295672		Pandoravirus(100.0%)	1	NA	NA
WP_061775002.1|507527_508694_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	36.0	4.6e-39
>prophage 37
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	515203	517603	2295672		Brevibacillus_phage(100.0%)	1	NA	NA
WP_061775027.1|515203_517603_+	ATP-dependent RecD-like DNA helicase	NA	A0A0K2FLP8	Brevibacillus_phage	29.0	3.5e-57
>prophage 38
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	535696	536950	2295672	transposase	Streptococcus_phage(100.0%)	1	NA	NA
WP_163604760.1|535696_536950_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	35.7	2.9e-63
>prophage 39
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	540546	543604	2295672		Bacillus_phage(66.67%)	3	NA	NA
WP_061774226.1|540546_541260_+	aquaporin family protein	NA	M1HWZ0	Paramecium_bursaria_Chlorella_virus	33.7	1.3e-28
WP_082785375.1|541329_542826_-	hypothetical protein	NA	W8CYF6	Bacillus_phage	35.1	2.9e-25
WP_061774228.1|542899_543604_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	32.9	2.4e-22
>prophage 40
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	550043	550796	2295672		Planktothrix_phage(100.0%)	1	NA	NA
WP_061774236.1|550043_550796_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.6	6.6e-31
>prophage 41
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	566237	572694	2295672		uncultured_Mediterranean_phage(50.0%)	9	NA	NA
WP_061774243.1|566237_567488_+	diaminopimelate decarboxylase	NA	A0A1V0SKK0	Klosneuvirus	20.4	1.5e-11
WP_003140136.1|567552_567789_+	YneF family protein	NA	NA	NA	NA	NA
WP_061774244.1|567954_568749_+	glutamate racemase	NA	NA	NA	NA	NA
WP_082785371.1|568745_569672_+	nucleoside-triphosphate diphosphatase	NA	A0A0P0A2M4	Ugandan_cassava_brown_streak_virus	30.2	1.6e-10
WP_061774245.1|569679_570198_+	metallophosphoesterase	NA	NA	NA	NA	NA
WP_061774246.1|570194_570662_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_061774247.1|570642_571365_+	site-specific tyrosine recombinase XerD	NA	NA	NA	NA	NA
WP_061774248.1|571380_572121_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	24.5	1.9e-06
WP_061774249.1|572121_572694_+	segregation/condensation protein B	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	35.8	6.6e-15
>prophage 42
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	583995	584766	2295672		Cafeteria_roenbergensis_virus(100.0%)	1	NA	NA
WP_061774262.1|583995_584766_-	ribonuclease HII	NA	E3T5H8	Cafeteria_roenbergensis_virus	42.4	4.6e-27
>prophage 43
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	600479	609402	2295672		Enterococcus_phage(28.57%)	10	NA	NA
WP_061774280.1|600479_602297_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	37.2	1.7e-88
WP_061774281.1|602418_603111_-	helix-turn-helix transcriptional regulator	NA	A0A1S5SD15	Streptococcus_phage	50.0	1.4e-64
WP_061774282.1|603210_603852_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_061774283.1|603956_604175_+	glutaredoxin-like protein NrdH	NA	A0A1W6JHV4	Lactococcus_phage	47.6	1.3e-11
WP_061774284.1|604171_604528_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	D9J0S1	Brochothrix_phage	35.2	3.7e-16
WP_061774285.1|604532_606686_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	60.4	5.2e-254
WP_096824036.1|606803_607766_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	67.1	1.1e-123
WP_061774286.1|607821_608691_-	glutathione-dependent reductase	NA	NA	NA	NA	NA
WP_004260832.1|608726_608864_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061774287.1|608991_609402_-	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	45.9	3.1e-30
>prophage 44
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	615476	618856	2295672		Streptococcus_phage(50.0%)	4	NA	NA
WP_061774948.1|615476_616844_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A1X9I6F4	Streptococcus_phage	59.7	1.1e-148
WP_061774947.1|616928_617189_-	Pathogenicity locus	NA	NA	NA	NA	NA
WP_061774946.1|617197_618271_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_061774945.1|618271_618856_-	LemA family protein	NA	A0A0C5K8T5	Enterococcus_phage	30.1	1.8e-12
>prophage 45
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	622548	623700	2295672		Mycoplasma_phage(100.0%)	1	NA	NA
WP_061774940.1|622548_623700_-	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	38.9	2.3e-35
>prophage 46
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	628669	630600	2295672	protease	Bacillus_virus(100.0%)	2	NA	NA
WP_061774935.1|628669_629884_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	57.6	8.0e-135
WP_061774934.1|630087_630600_-	dihydrofolate reductase	NA	G3MBI7	Bacillus_virus	40.8	1.7e-22
>prophage 47
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	636765	640493	2295672		Lactobacillus_phage(50.0%)	4	NA	NA
WP_061774928.1|636765_637914_-	toxic anion resistance protein	NA	A0A291I9K4	Lactobacillus_phage	27.4	8.9e-35
WP_082785412.1|637906_638419_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061774926.1|638518_639556_+	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_061774925.1|639557_640493_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	51.5	8.4e-76
>prophage 48
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	643676	649139	2295672		Tupanvirus(66.67%)	5	NA	NA
WP_061774919.1|643676_645218_+	D-alanine--poly(phosphoribitol) ligase subunit DltA	NA	A0A2K9KZV5	Tupanvirus	27.4	2.8e-36
WP_061774918.1|645214_646468_+	D-alanyl-lipoteichoic acid biosynthesis protein DltB	NA	A0A125RNP0	Pseudomonas_phage	31.9	2.6e-24
WP_061774917.1|646543_646783_+	D-alanine--poly(phosphoribitol) ligase subunit DltC	NA	NA	NA	NA	NA
WP_061774916.1|646775_648017_+	D-alanyl-lipoteichoic acid biosynthesis protein DltD	NA	NA	NA	NA	NA
WP_061774915.1|648149_649139_-	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	35.8	3.2e-49
>prophage 49
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	656553	658098	2295672		Prochlorococcus_phage(100.0%)	1	NA	NA
WP_061775155.1|656553_658098_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	E3SNU8	Prochlorococcus_phage	53.9	6.1e-47
>prophage 50
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	678469	691272	2295672		Bacillus_virus(40.0%)	10	NA	NA
WP_061774404.1|678469_679999_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	32.6	1.5e-16
WP_061774405.1|680116_681010_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_061774353.1|681022_681481_-	signal peptidase II	NA	NA	NA	NA	NA
WP_082785379.1|681543_683991_-	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	32.7	7.3e-95
WP_061774355.1|684009_684663_-	TrkA family potassium uptake protein	NA	NA	NA	NA	NA
WP_061774356.1|684705_686040_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096824040.1|686048_688004_-	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	42.8	5.6e-122
WP_061774358.1|688404_690558_-	type I DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	36.8	3.6e-106
WP_061774359.1|690824_691016_+	hypothetical protein	NA	NA	NA	NA	NA
WP_082785381.1|691005_691272_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A1S5S8E8	Streptococcus_phage	46.1	4.1e-12
>prophage 51
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	695030	696242	2295672		Staphylococcus_phage(100.0%)	1	NA	NA
WP_082785383.1|695030_696242_-	CapA family protein	NA	A0A0N9SJ77	Staphylococcus_phage	31.5	4.1e-30
>prophage 52
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	701804	704574	2295672		Streptococcus_phage(66.67%)	3	NA	NA
WP_061774368.1|701804_702710_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	43.6	6.1e-55
WP_061774369.1|702706_703684_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	68.1	3.0e-124
WP_061774370.1|703680_704574_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	34.7	1.1e-11
>prophage 53
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	712538	721812	2295672		Bacillus_phage(33.33%)	7	NA	NA
WP_061774379.1|712538_714830_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	39.4	8.3e-125
WP_061774380.1|715035_715257_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061774381.1|715359_716088_-	class A sortase	NA	NA	NA	NA	NA
WP_061774407.1|716107_717145_-	FAD:protein FMN transferase	NA	NA	NA	NA	NA
WP_061774382.1|717167_719645_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	35.5	8.4e-107
WP_061774383.1|719800_720679_-	acetylglutamate kinase	NA	NA	NA	NA	NA
WP_061774384.1|720675_721812_-	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.2	2.4e-16
>prophage 54
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	728739	736609	2295672		Tupanvirus(25.0%)	8	NA	NA
WP_061774409.1|728739_730563_-	elongation factor 4	NA	A0A2K9L2P9	Tupanvirus	39.6	3.2e-18
WP_061774392.1|730639_731053_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	44.4	5.1e-25
WP_061774393.1|731180_731615_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061774394.1|731615_732383_-	ATP-binding cassette domain-containing protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	28.0	7.0e-12
WP_061774395.1|732372_733212_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_061774396.1|733248_734250_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_096039176.1|734299_734764_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061774398.1|734980_736609_+	fibronectin/fibrinogen-binding protein	NA	A0A0P0YM59	Yellowstone_lake_phycodnavirus	33.9	1.2e-08
>prophage 55
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	742631	745617	2295672	transposase	Streptococcus_phage(50.0%)	3	NA	NA
WP_163604769.1|742631_743885_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	35.7	2.9e-63
WP_061775359.1|743993_744929_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_061775358.1|744921_745617_-	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	34.8	1.3e-28
>prophage 56
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	767385	776415	2295672		Bacillus_phage(20.0%)	7	NA	NA
WP_082785410.1|767385_768858_+	sucrose-6-phosphate hydrolase	NA	F8WPR5	Bacillus_phage	25.5	3.6e-20
WP_061774791.1|768896_769853_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_061774792.1|770152_771046_-	Fic family protein	NA	D7RWK9	Brochothrix_phage	25.8	3.9e-06
WP_061774793.1|771330_773295_-	potassium transporter Kup	NA	M1HZV6	Acanthocystis_turfacea_Chlorella_virus	37.2	4.4e-66
WP_061774794.1|773546_774839_-	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	24.8	4.7e-16
WP_096824057.1|774869_775928_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_061774796.1|775920_776415_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	38.9	3.5e-20
>prophage 57
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	780761	782276	2295672		Staphylococcus_phage(100.0%)	1	NA	NA
WP_061774801.1|780761_782276_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	32.1	3.8e-17
>prophage 58
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	787474	790343	2295672		Geobacillus_virus(50.0%)	4	NA	NA
WP_061774808.1|787474_788764_-	pyrimidine-nucleoside phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	53.3	2.0e-107
WP_061774809.1|788973_789534_-	signal peptidase I	NA	NA	NA	NA	NA
WP_061774810.1|789645_789852_-	DUF2969 family protein	NA	NA	NA	NA	NA
WP_003136945.1|790025_790343_-	thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	46.2	1.5e-16
>prophage 59
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	794733	796293	2295672		Tupanvirus(100.0%)	1	NA	NA
WP_061774815.1|794733_796293_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	27.6	1.7e-44
>prophage 60
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	799415	802982	2295672	transposase	Bacillus_phage(50.0%)	2	NA	NA
WP_163604774.1|799415_800526_+|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	41.1	2.1e-49
WP_061774410.1|800645_802982_-	endonuclease MutS2	NA	Q94M10	Lactobacillus_phage	45.3	7.6e-17
>prophage 61
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	815662	816403	2295672		Planktothrix_phage(100.0%)	1	NA	NA
WP_061774424.1|815662_816403_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.3	1.3e-31
>prophage 62
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	820588	825212	2295672		Mollivirus(50.0%)	3	NA	NA
WP_061774429.1|820588_822016_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.9	1.9e-55
WP_096039250.1|822477_823617_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_061774431.1|823772_825212_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	27.6	1.7e-35
>prophage 63
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	834866	853745	2295672		Planktothrix_phage(27.27%)	18	NA	NA
WP_061774442.1|834866_835625_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	3.7e-21
WP_061774443.1|835705_836509_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	7.9e-14
WP_061774444.1|836643_837531_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_061774445.1|837530_838454_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_061774446.1|838535_839396_-	phosphate ABC transporter substrate-binding protein PstS	NA	M1U9L0	Synechococcus_phage	29.3	1.3e-06
WP_061774447.1|839575_840451_-	phosphate ABC transporter substrate-binding protein	NA	M1U9L0	Synechococcus_phage	29.9	8.6e-06
WP_061774448.1|840698_841712_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_061774449.1|841725_842766_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_061774450.1|842797_843559_-	ABC transporter ATP-binding protein	NA	A0A1V0SKJ1	Klosneuvirus	27.5	1.6e-11
WP_061774451.1|843561_844629_-	iron ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	28.0	2.0e-20
WP_061774452.1|845021_846662_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_061774453.1|846675_847845_-	nucleotide sugar dehydrogenase	NA	M1HV26	Paramecium_bursaria_Chlorella_virus	50.0	5.4e-96
WP_061774454.1|848171_848642_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	52.9	1.2e-41
WP_061774455.1|848656_850960_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	41.2	1.4e-92
WP_003139598.1|851172_851421_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_061774456.1|851592_852516_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	51.0	2.1e-87
WP_061774457.1|852759_852984_-	DUF4059 family protein	NA	NA	NA	NA	NA
WP_061774458.1|852983_853745_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.6	5.1e-31
>prophage 64
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	858080	859010	2295672		Phaeocystis_globosa_virus(100.0%)	1	NA	NA
WP_061774463.1|858080_859010_-	ABC transporter ATP-binding protein	NA	R4TX06	Phaeocystis_globosa_virus	25.4	1.3e-07
>prophage 65
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	867480	925384	2295672	terminase,integrase,tail,head,portal,capsid,protease,transposase	Lactococcus_phage(40.0%)	52	903978:904037	923123:924700
WP_001048115.1|867480_868479_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_061775437.1|868699_869791_-	DUF871 domain-containing protein	NA	NA	NA	NA	NA
WP_061775438.1|869989_870232_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061775439.1|870336_872916_+	YfhO family protein	NA	NA	NA	NA	NA
WP_061775440.1|872924_873533_-	TVP38/TMEM64 family protein	NA	M1Q152	Streptococcus_phage	41.0	6.3e-32
WP_061775441.1|873638_874031_-	S1 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_061775443.1|875535_876165_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_061775444.1|876178_877123_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_061775445.1|877129_877804_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061775447.1|877881_878166_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_061775493.1|878718_879843_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061775494.1|879879_880212_-	hypothetical protein	NA	A0A1X9IGI3	Lactococcus_phage	62.7	1.4e-33
WP_163604775.1|880894_885586_-	hypothetical protein	NA	A0A0D3MTD5	Lactococcus_phage	46.5	1.0e-92
WP_163604776.1|885699_886698_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_163604777.1|886742_887240_-	hypothetical protein	NA	A0A2H4JFY7	uncultured_Caudovirales_phage	48.7	1.2e-36
WP_061775565.1|887236_887929_-	hypothetical protein	NA	A0A2H4J851	uncultured_Caudovirales_phage	40.2	6.1e-31
WP_163604778.1|887932_890668_-	hypothetical protein	NA	E3W8G4	Leuconostoc_phage	52.2	5.0e-92
WP_096824103.1|890987_891347_-	hypothetical protein	NA	D2XR24	Bacillus_phage	54.6	3.0e-29
WP_163604779.1|891410_891998_-|tail	phage tail protein	tail	A0A2H4J534	uncultured_Caudovirales_phage	50.5	1.6e-43
WP_163604780.1|892028_893204_-	hypothetical protein	NA	Q9AZY0	Lactococcus_phage	43.8	1.8e-14
WP_061775548.1|893204_893558_-	hypothetical protein	NA	A0A290FZT5	Caldibacillus_phage	50.5	1.4e-20
WP_061775547.1|893557_893866_-|head	phage head closure protein	head	Q9AZY2	Lactococcus_phage	45.2	2.0e-13
WP_061775546.1|893867_894146_-	hypothetical protein	NA	Q9AZY3	Lactococcus_phage	62.1	5.5e-23
WP_061775545.1|894138_894324_-	hypothetical protein	NA	NA	NA	NA	NA
WP_163604781.1|894380_895595_-|capsid	phage major capsid protein	capsid	A0A1D6Z2A0	Staphylococcus_phage	34.8	3.4e-37
WP_061775501.1|895585_896167_-|head,protease	HK97 family phage prohead protease	head,protease	Q9AZY6	Lactococcus_phage	64.2	6.9e-60
WP_061775500.1|896163_897369_-|portal	phage portal protein	portal	Q9AZY7	Lactococcus_phage	60.6	6.1e-119
WP_082785453.1|897388_899206_-|terminase	terminase large subunit	terminase	Q9AZY8	Lactococcus_phage	52.0	1.8e-167
WP_061775498.1|899211_899580_-	hypothetical protein	NA	Q0H265	Geobacillus_phage	48.1	4.7e-14
WP_061775497.1|899738_900059_-	HNH endonuclease	NA	A0A0S2SXR6	Bacillus_phage	53.5	7.7e-21
WP_163604782.1|900058_900259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061775521.1|900495_901389_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061775520.1|901502_902297_-	hypothetical protein	NA	NA	NA	NA	NA
WP_156470239.1|902381_902519_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061775519.1|902560_903643_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061775518.1|903655_903841_-	hypothetical protein	NA	NA	NA	NA	NA
903978:904037	attL	TGTCAAGCGAAATTGAAAATGTCCCAAAAAAAGTGGAAACATGAGTTACATTTTGCTAAA	NA	NA	NA	NA
WP_138492594.1|904084_905464_-|transposase	ISNCY family transposase	transposase	NA	NA	NA	NA
WP_061775528.1|906588_907203_-	DUF4230 domain-containing protein	NA	NA	NA	NA	NA
WP_061775529.1|907305_908253_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_096039301.1|908426_908756_-	metal-sulfur cluster assembly factor	NA	NA	NA	NA	NA
WP_061775417.1|908922_910362_-	glutamate synthase subunit beta	NA	NA	NA	NA	NA
WP_061775419.1|910363_914866_-	glutamate synthase large subunit	NA	NA	NA	NA	NA
WP_061775425.1|915136_915868_-	epoxyqueuosine reductase QueH	NA	NA	NA	NA	NA
WP_061775421.1|916087_916675_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061775423.1|916745_917171_+	hypothetical protein	NA	NA	NA	NA	NA
WP_082785449.1|917273_919391_+	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	29.9	1.7e-68
WP_163604783.1|919543_920542_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_061775561.1|921095_921443_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_138492594.1|921695_923075_+|transposase	ISNCY family transposase	transposase	NA	NA	NA	NA
WP_061774050.1|923288_924011_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061774049.1|923989_924562_+	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_061774048.1|924634_925384_-	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	26.4	7.1e-17
923123:924700	attR	TTTAGCAAAATGTAACTCATGTTTCCACTTTTTTTGGGACATTTTCAATTTCGCTTGACAGTCTTATTTATTATATTTATCGATACTCCCCAATTTTACCTTAGATTTAATTAATTAACTATAATTCTTTAGTTTTTCAACATCACGCGCAATCATTAACTCCTCATCAGTTGGGATAACAACTTCCCACACCCCGCACATCCAAAGTTTGAAAAGGACCGTAGGAGAGCAGCTTTTTATCCAGATATTCTCCAATAAACTTGGCCGCATCATCACGGGAAAAACCATAGGTCATCTGTGTTAAATCATTGGTGCCAAAACTTGCGAAATCAGCCTCAGTTGCGATCTCATCAGCTGTCACACAGGCTCTTGGTATCTCAATCATTGTACCGATCTGACAATGCCAATCATTGCCTGACTTCGTGATAACTTCAGCAATCGCTGCTTTAACTTGCTTTTTTACGTCAGCTAACTTTGCTACCTCAGCTACCAAAGGAATCATAATTTCAGCATTTGCAGTGATTCCTTCTTCCTGTTTTAAAGCAATCACACTCTCAGTAATCGCTTGAGCCTGCAACCGATATATTTCCGGAAAAGTGACAGCTAATCTACACCCACGATGACCTAGCATTGGATTAACTTCGCTCAAGCTTTCAATTCTTTGCTTAATTTCGGTTACGGACAAGTTTAGCTCAGTAGCTAAAATCTCAATTTCTTTAACCGAATGCGGTAAAAATTCATGCAAAGGAGGATCCAATAACCGAACAGTGACAGGTTTGTCCCGCACCAAATTAAAGATTGCTTTAAAGTCTTCTTTTTGAATAGCTTTGAGTGTTGCCAAAGCCTTTGCACGAGAATTTTCTTCTGATGATAATATCAGTTTTCTCATATTTAAGATCCGCGTCTCACCAAAGAACATTAAATCAAACCTATTTCAATCGTGTCGCAGCTATTGAATTTGCTGTCCGTTATGACGATGGTAAAGACCCTCGAGGTTTCAAAGATGCTGATCTCGTATTGCTAGGCATTTCACGCACTTCCAAGACACCTCTAAGTATGTATCTGGCCAATCATAATCTAAAAGTCGCAAATCTTCCACTGTTGCCAGAGATTCCTGTTCCAAAAGAAATTTATGATGTGCCAAAAAATAAATTGATTGGCCTCACGACAACGATTAGTAAACTTACGGATATCCGTAACAATCGCTTACAAGCTTTAGGGTTACCAGAAGGTTCAAACTACGCTTCAATCGCACGAATTCAAGGAGAAATCAATTATGCTAACACGATTTTTGAAGTTTTAGAATGTCCTGTTATTAACGTTGATAATCGCTCTATTGAGGAAATTGCTATGTTAATTCAAAAAAAAATTAGGTCATCATCTTCCGCTTCATTCTTTTCTATTCCAGATATCCAAATGGAAGTGTGCTTAATTACCTGATACTATTTTATTTTGCTAATATAAAAAATCACCTTGATTTTCTAATCAAGGTGATTTTTCTTCTACGCATCTTTAAACAATGACTAGCTTCAGGTCTTTAGCATATTTTTTGAAATGATTTTTACTTTTGGCTGTCAA	NA	NA	NA	NA
>prophage 66
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	949432	953923	2295672		Streptococcus_phage(100.0%)	4	NA	NA
WP_061774030.1|949432_950674_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	54.7	1.1e-112
WP_061774029.1|950687_951899_-	aminoacyltransferase	NA	NA	NA	NA	NA
WP_061774028.1|951915_953133_-	peptidoglycan bridge formation glycyltransferase FemA/FemB family protein	NA	NA	NA	NA	NA
WP_061774027.1|953122_953923_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.9	1.7e-45
>prophage 67
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	958072	961414	2295672		Acanthamoeba_polyphaga_moumouvirus(33.33%)	4	NA	NA
WP_061774021.1|958072_959401_-	exodeoxyribonuclease VII large subunit	NA	L7RDW5	Acanthamoeba_polyphaga_moumouvirus	31.9	2.3e-34
WP_061774020.1|959452_960301_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.7	4.0e-40
WP_061774019.1|960463_960886_-	Spx/MgsR family RNA polymerase-binding regulatory protein	NA	NA	NA	NA	NA
WP_061774018.1|961066_961414_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	Q332J9	Clostridium_botulinum_C_phage	32.1	7.6e-06
>prophage 68
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	972826	979781	2295672		Acinetobacter_phage(60.0%)	7	NA	NA
WP_061774008.1|972826_973597_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	37.9	6.2e-32
WP_061774007.1|973626_973917_-	chorismate mutase	NA	NA	NA	NA	NA
WP_061774006.1|973913_974918_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	36.4	4.7e-48
WP_061774005.1|974954_975512_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.0	3.0e-36
WP_061774004.1|975495_976872_-	anthranilate synthase component I	NA	NA	NA	NA	NA
WP_061774003.1|977311_979423_-	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	57.2	1.5e-213
WP_061774002.1|979415_979781_-	winged helix-turn-helix transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	46.2	2.5e-23
>prophage 69
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	983491	983992	2295672		Pectobacterium_phage(100.0%)	1	NA	NA
WP_003140677.1|983491_983992_-	translation initiation factor IF-3	NA	A0A1L2CV30	Pectobacterium_phage	36.7	1.9e-10
>prophage 70
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	1010521	1018538	2295672		Streptococcus_phage(33.33%)	7	NA	NA
WP_082785351.1|1010521_1012795_-	DNA internalization-related competence protein ComEC/Rec2	NA	M1PSD2	Streptococcus_phage	56.2	5.6e-49
WP_082785357.1|1012733_1013285_-	competence protein ComEA	NA	NA	NA	NA	NA
WP_061773973.1|1013444_1014665_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_061773972.1|1014657_1015551_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.1	8.7e-22
WP_061773971.1|1015725_1016160_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061773970.1|1016215_1016410_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_061773969.1|1016714_1018538_-	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	47.7	2.2e-136
>prophage 71
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	1025832	1028658	2295672		Bacillus_phage(100.0%)	1	NA	NA
WP_061773961.1|1025832_1028658_-	DEAD/DEAH box helicase	NA	Q5YA94	Bacillus_phage	26.8	5.8e-27
>prophage 72
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	1037511	1038246	2295672		Diadromus_pulchellus_ascovirus(100.0%)	1	NA	NA
WP_061773953.1|1037511_1038246_-	3-oxoacyl-[acyl-carrier-protein] reductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	31.2	7.7e-16
>prophage 73
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	1043630	1047782	2295672	transposase	Hokovirus(33.33%)	3	NA	NA
WP_061774051.1|1043630_1044575_+	dihydroorotate oxidase	NA	A0A1V0SH91	Hokovirus	43.0	2.2e-63
WP_163604784.1|1044996_1046250_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	34.1	6.5e-55
WP_061775474.1|1046369_1047782_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	30.8	8.9e-53
>prophage 74
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	1066745	1067693	2295672	transposase	unidentified_phage(100.0%)	1	NA	NA
WP_061775560.1|1066745_1067693_-|transposase	IS30 family transposase	transposase	H7BVY4	unidentified_phage	32.7	5.8e-32
>prophage 75
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	1070847	1073463	2295672	tRNA	Tupanvirus(100.0%)	1	NA	NA
WP_061775234.1|1070847_1073463_-|tRNA	alanine--tRNA ligase	tRNA	A0A2K9L3D8	Tupanvirus	34.7	1.1e-64
>prophage 76
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	1082516	1083089	2295672		Clostridioides_phage(100.0%)	1	NA	NA
WP_163604842.1|1082516_1083089_-	C40 family peptidase	NA	A0A1V0DZX6	Clostridioides_phage	39.6	2.3e-15
>prophage 77
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	1086965	1181174	2295672	terminase,tRNA,integrase,tail,head,portal,capsid,protease,transposase	Lactococcus_phage(24.32%)	91	1099936:1099951	1179301:1179430
WP_163604776.1|1086965_1087964_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_061775416.1|1088167_1088896_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_061775414.1|1089007_1089529_+	DUF4865 family protein	NA	NA	NA	NA	NA
WP_003139300.1|1089719_1089995_-	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	71.9	4.0e-26
WP_061775412.1|1090129_1090702_-	YpmS family protein	NA	NA	NA	NA	NA
WP_061775410.1|1090691_1091555_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA	NA
WP_061775409.1|1091621_1092452_-	DegV family protein	NA	NA	NA	NA	NA
WP_061775408.1|1092623_1093322_+	hemolysin III family protein	NA	NA	NA	NA	NA
WP_061775407.1|1093399_1096522_-	DNA polymerase III subunit alpha	NA	A0A291AVG1	Streptomyces_phage	27.6	1.3e-117
WP_061775405.1|1096724_1096916_+	YjzD family protein	NA	NA	NA	NA	NA
WP_061775404.1|1097033_1098605_+	ABC transporter ATP-binding protein	NA	A0A2H4UU96	Bodo_saltans_virus	29.3	1.2e-18
WP_163604757.1|1099046_1100300_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	35.7	1.7e-63
1099936:1099951	attL	TCTTTTTCTGTTAGTC	NA	NA	NA	NA
WP_061775053.1|1100449_1102060_-	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	44.9	4.4e-133
1099936:1099951	attL	TCTTTTTCTGTTAGTC	NA	NA	NA	NA
WP_061775052.1|1102304_1103567_-	HAD-IC family P-type ATPase	NA	NA	NA	NA	NA
WP_061775051.1|1103563_1104724_-	HAD-IC family P-type ATPase	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	28.1	4.3e-21
WP_061775050.1|1104782_1105772_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_061775049.1|1105805_1106372_-	TIGR01440 family protein	NA	NA	NA	NA	NA
WP_061775048.1|1106425_1106887_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_061775054.1|1106870_1107644_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_061775047.1|1107630_1108389_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_061775046.1|1108503_1110498_-	ABC transporter ATP-binding protein/permease	NA	G9BWD6	Planktothrix_phage	37.1	2.7e-31
WP_144259894.1|1110638_1110956_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_061775044.1|1110952_1111681_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_061775043.1|1112009_1113851_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_061775042.1|1114334_1114946_-	30S ribosomal protein S4	NA	NA	NA	NA	NA
WP_061775041.1|1115114_1115849_-	RNA methyltransferase	NA	NA	NA	NA	NA
WP_061775040.1|1115975_1116251_+	acylphosphatase	NA	NA	NA	NA	NA
WP_061775039.1|1116261_1116513_+	YrdB family protein	NA	NA	NA	NA	NA
WP_061775038.1|1116742_1117612_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_082785419.1|1117681_1119292_-	aminodeoxychorismate synthase component I	NA	S4VNU7	Pandoravirus	37.5	3.9e-28
WP_061775036.1|1119340_1119934_-	hypothetical protein	NA	A0A1W6JSC2	Bacillus_phage	38.5	1.2e-19
WP_061775035.1|1119972_1120956_-	nucleoid-associated protein	NA	NA	NA	NA	NA
WP_061775034.1|1120961_1122215_-	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	56.6	1.0e-105
WP_003137233.1|1122204_1122831_-	threonylcarbamoyl-AMP synthase	NA	A0A291ATS8	Pandoravirus	35.5	2.0e-20
WP_061775033.1|1122823_1123639_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_061775032.1|1123635_1124703_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003137230.1|1124699_1125773_-	peptide chain release factor 1	NA	NA	NA	NA	NA
WP_061775031.1|1125842_1126355_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_061775030.1|1126383_1126953_-	thymidine kinase	NA	A0A249XZX5	Enterococcus_phage	53.8	2.9e-47
WP_061775029.1|1127096_1128275_-|integrase	site-specific integrase	integrase	A0A1B1IMP1	Lactococcus_phage	31.4	7.4e-37
WP_003137224.1|1128375_1128588_-	hypothetical protein	NA	NA	NA	NA	NA
WP_163604788.1|1128872_1129175_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001015311.1|1129259_1129940_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	1.5e-127
WP_061775491.1|1130379_1130727_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	40.2	8.9e-15
WP_061775490.1|1130723_1131158_+	arsenite efflux transporter metallochaperone ArsD	NA	NA	NA	NA	NA
WP_061775492.1|1131172_1132888_+	arsenical pump-driving ATPase	NA	NA	NA	NA	NA
WP_061775489.1|1132905_1134567_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
1133933:1133948	attR	GACTAACAGAAAAAGA	NA	NA	NA	NA
WP_163604789.1|1135892_1136891_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
1133933:1133948	attR	GACTAACAGAAAAAGA	NA	NA	NA	NA
WP_163604790.1|1137682_1138681_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_014571824.1|1139687_1139975_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_061775373.1|1140066_1142019_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.2	3.5e-116
WP_061775384.1|1142755_1143691_-	zinc ABC transporter solute-binding protein	NA	NA	NA	NA	NA
WP_061775375.1|1143713_1144559_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_061775376.1|1144551_1145307_-	metal ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	28.8	5.1e-15
WP_061775377.1|1145332_1146676_-	divalent metal cation transporter	NA	NA	NA	NA	NA
WP_061775378.1|1146749_1147409_-	metal-dependent transcriptional regulator	NA	NA	NA	NA	NA
WP_061775379.1|1147681_1149394_-	ABC transporter permease/substrate binding protein	NA	NA	NA	NA	NA
WP_061775380.1|1149395_1150649_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.1	7.9e-29
WP_061775381.1|1150820_1151444_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_061775382.1|1151833_1152442_-	nitroreductase	NA	NA	NA	NA	NA
WP_096040148.1|1152779_1153142_-	DUF1033 family protein	NA	NA	NA	NA	NA
WP_061775513.1|1153486_1154044_-	hypothetical protein	NA	A0A0N6WMQ4	Lactococcus_phage	34.6	1.3e-15
WP_061775512.1|1154056_1154389_-	hypothetical protein	NA	A0A1X9IGI3	Lactococcus_phage	60.9	1.7e-31
WP_163604791.1|1154412_1159464_-	hypothetical protein	NA	A0A0D3MTD5	Lactococcus_phage	46.0	2.3e-95
WP_061775566.1|1159460_1160153_-	hypothetical protein	NA	A0A2H4J851	uncultured_Caudovirales_phage	36.5	1.1e-24
WP_163604792.1|1160156_1162892_-	hypothetical protein	NA	E3W8G4	Leuconostoc_phage	51.6	2.2e-87
WP_061775572.1|1163008_1163206_-	hypothetical protein	NA	Q0H231	Geobacillus_phage	46.0	2.1e-05
WP_096824125.1|1163211_1163571_-	hypothetical protein	NA	D2XR24	Bacillus_phage	52.9	8.6e-29
WP_163604793.1|1163634_1164222_-|tail	phage tail protein	tail	A0A0U4JWV5	Exiguobacterium_phage	49.2	2.2e-42
WP_163604794.1|1164253_1165429_-	hypothetical protein	NA	C5J968	Streptococcus_phage	41.5	2.0e-13
WP_061775540.1|1165429_1165786_-	hypothetical protein	NA	A0A290FZT5	Caldibacillus_phage	52.9	1.0e-18
WP_061775541.1|1165782_1166091_-|head	phage head closure protein	head	Q9AZY2	Lactococcus_phage	47.3	3.9e-14
WP_061775542.1|1166090_1166369_-	hypothetical protein	NA	Q9AZY3	Lactococcus_phage	62.8	2.7e-22
WP_061775543.1|1166361_1166547_-	hypothetical protein	NA	NA	NA	NA	NA
WP_163604795.1|1166605_1167853_-|capsid	phage major capsid protein	capsid	A0A0U4IB53	Exiguobacterium_phage	46.3	3.4e-64
WP_061775501.1|1167843_1168425_-|head,protease	HK97 family phage prohead protease	head,protease	Q9AZY6	Lactococcus_phage	64.2	6.9e-60
WP_061775500.1|1168421_1169627_-|portal	phage portal protein	portal	Q9AZY7	Lactococcus_phage	60.6	6.1e-119
WP_082785453.1|1169646_1171464_-|terminase	terminase large subunit	terminase	Q9AZY8	Lactococcus_phage	52.0	1.8e-167
WP_061775498.1|1171469_1171838_-	hypothetical protein	NA	Q0H265	Geobacillus_phage	48.1	4.7e-14
WP_061775497.1|1171996_1172317_-	HNH endonuclease	NA	A0A0S2SXR6	Bacillus_phage	53.5	7.7e-21
WP_061775496.1|1172316_1172517_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061775485.1|1172751_1173645_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061775484.1|1173758_1174553_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061775483.1|1174638_1174827_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061775482.1|1174866_1176018_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061775481.1|1176030_1176216_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061775480.1|1176949_1178110_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061775486.1|1178253_1179210_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_144259881.1|1179252_1179357_-	DUF1033 family protein	NA	NA	NA	NA	NA
WP_096040147.1|1179409_1179808_-	Mini-ribonuclease 3	NA	NA	NA	NA	NA
WP_061774783.1|1179800_1181174_-|tRNA	cysteine--tRNA ligase	tRNA	A0A2K9V966	Bandra_megavirus	31.7	1.5e-49
>prophage 78
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	1184377	1192074	2295672		Hokovirus(33.33%)	8	NA	NA
WP_061774777.1|1184377_1185343_+	ribose-phosphate diphosphokinase	NA	A0A1V0SHF7	Hokovirus	34.1	1.8e-36
WP_061774775.1|1185428_1186562_+	cysteine desulfurase	NA	NA	NA	NA	NA
WP_061774773.1|1186611_1186953_+	DUF1831 domain-containing protein	NA	NA	NA	NA	NA
WP_061774772.1|1187106_1188303_-	elongation factor Tu	NA	A0A076FFS6	Aureococcus_anophage	28.4	3.0e-33
WP_061774770.1|1188639_1188834_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061774768.1|1188820_1189726_+	permease	NA	NA	NA	NA	NA
WP_061774767.1|1189722_1190529_+	TIGR03943 family protein	NA	NA	NA	NA	NA
WP_061774765.1|1190589_1192074_+	glucose-6-phosphate dehydrogenase	NA	E3SJC5	Synechococcus_phage	34.9	2.8e-73
>prophage 79
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	1211387	1212473	2295672		Bacillus_phage(100.0%)	1	NA	NA
WP_082785409.1|1211387_1212473_-	hypothetical protein	NA	A0A1B1SGK5	Bacillus_phage	49.1	1.3e-16
>prophage 80
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	1222269	1224932	2295672	tRNA	Bodo_saltans_virus(50.0%)	2	NA	NA
WP_061774476.1|1222269_1223307_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.1e-28
WP_061774477.1|1223669_1224932_-	purine permease	NA	Q9KX94	Enterobacteria_phage	27.6	1.0e-28
>prophage 81
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	1241511	1280242	2295672	plate,integrase,portal,capsid,holin,transposase	Bacillus_phage(27.59%)	48	1242409:1242425	1283200:1283216
WP_061774493.1|1241511_1242777_-	LysM peptidoglycan-binding domain-containing protein	NA	Q8LTP4	Lactococcus_phage	59.3	1.8e-137
1242409:1242425	attL	AACGTCAAGCGCCACAA	NA	NA	NA	NA
WP_061774494.1|1242773_1243175_-|holin	phage holin family protein	holin	F0PIJ6	Enterococcus_phage	63.1	2.9e-41
WP_061774495.1|1243187_1244036_-	hypothetical protein	NA	Q5K5I3	Oenococcus_phage	42.5	1.0e-19
WP_061774496.1|1244046_1245090_-	hypothetical protein	NA	Q5K5I4	Oenococcus_phage	34.4	3.5e-46
WP_061774497.1|1245086_1246487_-|plate	phage baseplate protein	plate	B6D7I8	Listeria_phage	33.8	2.2e-11
WP_061774498.1|1246487_1250267_-	hypothetical protein	NA	A0A1D3SNL5	Enterococcus_phage	33.4	3.0e-55
WP_061774499.1|1250266_1250584_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061774500.1|1250580_1250871_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061774501.1|1250925_1251483_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061774502.1|1251484_1251856_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061774503.1|1251855_1252269_-	hypothetical protein	NA	A0A0A7AQU9	Bacillus_phage	40.0	5.3e-14
WP_061774504.1|1252261_1252588_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061774505.1|1252571_1252898_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061774506.1|1252905_1253121_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061774507.1|1253138_1254038_-	hypothetical protein	NA	U3PDP8	Lactobacillus_phage	49.3	8.7e-70
WP_061774508.1|1254041_1254620_-	DUF4355 domain-containing protein	NA	NA	NA	NA	NA
WP_061774509.1|1254774_1254993_-	hypothetical protein	NA	A0A1P8BLD4	Lactococcus_phage	88.9	2.3e-32
WP_061774510.1|1254996_1256622_-|capsid	minor capsid protein	capsid	A0A1P8BLD7	Lactococcus_phage	48.2	1.0e-132
WP_061774511.1|1256554_1257949_-|portal	phage portal protein	portal	A0A0M4S669	Bacillus_phage	43.2	6.0e-86
WP_061774512.1|1257957_1259247_-	hypothetical protein	NA	D2J053	Enterococcus_phage	68.7	2.7e-165
WP_061774513.1|1259243_1259648_-	hypothetical protein	NA	A0A1L2JXH0	Streptococcus_phage	78.8	6.7e-46
WP_061774514.1|1259705_1260131_-	universal stress protein	NA	NA	NA	NA	NA
WP_096824046.1|1260314_1260749_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_061774516.1|1260763_1261240_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061774517.1|1261657_1262065_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A220G9T0	Streptococcus_phage	48.1	2.8e-23
WP_156470220.1|1262051_1262216_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061774518.1|1262208_1262430_-	hypothetical protein	NA	A0A0K2CZG3	Paenibacillus_phage	42.3	5.0e-11
WP_082785393.1|1262685_1264977_-	AAA family ATPase	NA	Q5YA88	Bacillus_phage	55.1	6.1e-237
WP_061774520.1|1264982_1266578_-	DEAD/DEAH box helicase	NA	Q5YA94	Bacillus_phage	67.4	2.3e-206
WP_061774521.1|1266552_1266813_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061774523.1|1267436_1268519_-	ATP-binding protein	NA	Q5YA96	Bacillus_phage	47.5	3.3e-84
WP_061774524.1|1268531_1269788_-	AAA family ATPase	NA	Q5YA97	Bacillus_phage	61.9	8.2e-143
WP_061774525.1|1269820_1270180_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061774526.1|1270343_1270565_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061774527.1|1270576_1270810_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061774528.1|1270882_1271068_-	helix-turn-helix transcriptional regulator	NA	A0A1X9I6I3	Streptococcus_phage	52.5	2.3e-09
WP_061774529.1|1271260_1271533_+	DUF3892 domain-containing protein	NA	A0A059NT53	Lactococcus_phage	43.7	2.1e-11
WP_061774530.1|1271540_1271741_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031366573.1|1271755_1271947_-	hypothetical protein	NA	Q9AZF4	Lactococcus_phage	74.6	5.6e-19
WP_061774534.1|1272363_1272696_+	helix-turn-helix domain-containing protein	NA	A0A182BQC8	Lactococcus_phage	49.1	4.7e-21
WP_061774531.1|1272709_1273144_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061774532.1|1273161_1274184_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061774533.1|1274312_1274534_+	hypothetical protein	NA	A0A1S5SA77	Streptococcus_phage	42.5	5.1e-08
WP_096824047.1|1274540_1274891_+	hypothetical protein	NA	Q7Y4M3	Streptococcus_phage	30.3	2.9e-05
WP_163604796.1|1274985_1275936_+|transposase	IS30 family transposase	transposase	H7BUM7	unidentified_phage	34.3	1.5e-35
WP_144259910.1|1275928_1276537_+|integrase	site-specific integrase	integrase	C9E2L6	Enterococcus_phage	37.2	3.2e-23
WP_061775461.1|1276631_1278536_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.9	1.6e-49
WP_061775465.1|1278535_1280242_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	24.8	1.3e-29
1283200:1283216	attR	TTGTGGCGCTTGACGTT	NA	NA	NA	NA
>prophage 82
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	1283890	1292963	2295672	transposase	Streptococcus_phage(25.0%)	6	NA	NA
WP_163604757.1|1283890_1285144_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	35.7	1.7e-63
WP_061775055.1|1285224_1286634_-	PASTA domain-containing protein	NA	NA	NA	NA	NA
WP_061775056.1|1286626_1287298_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.3	1.2e-23
WP_061775057.1|1287304_1288891_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_061775058.1|1289141_1290332_+	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	52.5	4.9e-20
WP_061775059.1|1290572_1292963_-	glycogen/starch/alpha-glucan phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	37.9	1.3e-11
>prophage 83
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	1323065	1347072	2295672		Enterococcus_phage(25.0%)	14	NA	NA
WP_061774595.1|1323065_1326677_-	DNA-directed RNA polymerase subunit beta'	NA	R4TQM7	Phaeocystis_globosa_virus	25.1	7.8e-69
WP_061774594.1|1326856_1330444_-	DNA-directed RNA polymerase subunit beta	NA	A0A2P0VMZ3	Tetraselmis_virus	25.2	1.2e-37
WP_082785399.1|1330959_1332429_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_061774592.1|1332466_1333147_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.9	1.7e-25
WP_061774591.1|1333223_1334876_-	phosphoenolpyruvate carboxykinase (ATP)	NA	NA	NA	NA	NA
WP_061774590.1|1335055_1336939_-	peptidase M13	NA	E3T4I7	Cafeteria_roenbergensis_virus	28.8	2.6e-68
WP_061774589.1|1336931_1337963_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_061774588.1|1338077_1338926_-	VOC family protein	NA	NA	NA	NA	NA
WP_061774587.1|1339081_1339681_-	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A0C5K925	Enterococcus_phage	57.5	2.8e-56
WP_061774586.1|1339841_1341470_-	polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_061774585.1|1341485_1342385_-	GTPase Era	NA	NA	NA	NA	NA
WP_061774602.1|1342543_1344103_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	35.7	1.3e-60
WP_061774584.1|1344687_1346244_-	peptide chain release factor 3	NA	A0A1B0RXH7	Streptococcus_phage	28.3	8.3e-36
WP_061774583.1|1346451_1347072_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A249XZV3	Enterococcus_phage	55.7	1.6e-27
>prophage 84
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	1355314	1364639	2295672	transposase	Planktothrix_phage(25.0%)	9	NA	NA
WP_061774573.1|1355314_1356055_-	phosphonate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.3	1.2e-24
WP_061774572.1|1356208_1357261_-	PhnD/SsuA/transferrin family substrate-binding protein	NA	NA	NA	NA	NA
WP_163604796.1|1357486_1358437_+|transposase	IS30 family transposase	transposase	H7BUM7	unidentified_phage	34.3	1.5e-35
WP_061774603.1|1358613_1359969_-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA	NA
WP_061774604.1|1360055_1360679_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.7	2.8e-11
WP_061774605.1|1360680_1361361_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061774606.1|1361439_1361769_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061774607.1|1362066_1363017_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_061774608.1|1363181_1364639_-	glycoside hydrolase family 1 protein	NA	A0A0B5JD41	Pandoravirus	31.2	2.3e-51
>prophage 85
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	1374021	1376664	2295672		Marinitoga_camini_virus(50.0%)	4	NA	NA
WP_061774616.1|1374021_1374303_-	helix-turn-helix transcriptional regulator	NA	A0A142LP09	Marinitoga_camini_virus	46.6	1.8e-05
WP_061774617.1|1374452_1374896_-	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA	NA
WP_061774618.1|1374946_1375624_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_061774644.1|1375620_1376664_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	35.3	7.3e-28
>prophage 86
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	1383300	1386292	2295672		Lactobacillus_phage(50.0%)	3	NA	NA
WP_061774628.1|1383300_1384443_-	nicotinamide-nucleotide adenylyltransferase	NA	A0A2K9VDE3	Lactobacillus_phage	54.5	5.6e-114
WP_163604798.1|1384455_1384812_-	YcxB family protein	NA	NA	NA	NA	NA
WP_061774630.1|1385002_1386292_-	U32 family peptidase	NA	Q6DW11	Phage_TP	33.2	3.1e-44
>prophage 87
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	1400890	1401841	2295672	transposase	unidentified_phage(100.0%)	1	NA	NA
WP_163604799.1|1400890_1401841_-|transposase	IS30 family transposase	transposase	H7BUM7	unidentified_phage	34.0	1.9e-35
>prophage 88
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	1411047	1412272	2295672		Staphylococcus_phage(50.0%)	2	NA	NA
WP_061775400.1|1411047_1411791_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.0	5.4e-25
WP_061775403.1|1411870_1412272_+	HIT family protein	NA	B5LJ12	Mycobacterium_phage	29.7	7.4e-05
>prophage 89
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	1419048	1427747	2295672		Streptococcus_phage(40.0%)	10	NA	NA
WP_061773790.1|1419048_1419672_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	53.9	7.1e-55
WP_061773789.1|1419715_1420990_+	DEAD/DEAH box helicase	NA	A0A1X9I5S6	Streptococcus_phage	55.9	6.0e-125
WP_163604800.1|1421304_1421634_+	ComF family protein	NA	NA	NA	NA	NA
WP_061773787.1|1421636_1422038_-	diacylglycerol kinase family protein	NA	NA	NA	NA	NA
WP_061773786.1|1422021_1422513_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_061773785.1|1422570_1423029_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061773784.1|1423021_1424008_-	PhoH family protein	NA	H6X2N1	Pseudomonas_phage	49.1	1.7e-50
WP_082785336.1|1424267_1425587_-	GTPase ObgE	NA	NA	NA	NA	NA
WP_061773782.1|1425762_1426686_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	34.1	6.3e-23
WP_061773781.1|1426688_1427747_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.8	1.7e-16
>prophage 90
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	1438450	1442356	2295672		Bacillus_phage(66.67%)	3	NA	NA
WP_061773772.1|1438450_1439941_-	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	31.1	1.1e-24
WP_061773771.1|1440170_1440863_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.0	1.0e-33
WP_061773770.1|1440934_1442356_-	NADP-dependent phosphogluconate dehydrogenase	NA	M4QQM4	Ostreococcus_lucimarinus_virus	28.5	2.1e-41
>prophage 91
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	1450938	1454576	2295672		Bacillus_phage(100.0%)	2	NA	NA
WP_061773762.1|1450938_1452804_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.2	9.0e-53
WP_061773761.1|1452803_1454576_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.0	7.0e-39
>prophage 92
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	1470941	1477293	2295672		Bacillus_phage(100.0%)	3	NA	NA
WP_061773748.1|1470941_1472723_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.3	1.7e-56
WP_061773747.1|1472715_1474473_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.9	6.3e-56
WP_061773746.1|1474677_1477293_-	DNA polymerase I	NA	S5M8J1	Bacillus_phage	31.2	2.4e-51
>prophage 93
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	1483638	1489341	2295672	tRNA	Tupanvirus(50.0%)	4	NA	NA
WP_061773741.1|1483638_1485402_-|tRNA	aspartate--tRNA ligase	tRNA	A0A2K9L3L6	Tupanvirus	29.5	5.2e-10
WP_061773740.1|1485823_1486612_-	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA	NA
WP_082785334.1|1486717_1488148_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_061773739.1|1488381_1489341_+	MFS transporter	NA	A0A1B0RXG2	Streptococcus_phage	37.3	1.5e-51
>prophage 94
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	1500177	1501665	2295672	tRNA	Tupanvirus(100.0%)	1	NA	NA
WP_061773728.1|1500177_1501665_+|tRNA	lysine--tRNA ligase	tRNA	A0A2K9KZX5	Tupanvirus	40.0	3.8e-86
>prophage 95
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	1519102	1529920	2295672	tRNA,holin	Bacillus_phage(20.0%)	10	NA	NA
WP_061773709.1|1519102_1520275_-	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	65.3	1.8e-120
WP_061773708.1|1520395_1521229_-	DNA-formamidopyrimidine glycosylase	NA	G3MA33	Bacillus_virus	35.3	1.9e-31
WP_061773707.1|1521329_1522763_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_061773706.1|1523176_1523617_-	DUF1810 domain-containing protein	NA	A0A2H4UVK5	Bodo_saltans_virus	40.0	1.9e-14
WP_061773705.1|1523805_1524666_+	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA	NA
WP_061773704.1|1524667_1525657_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_082785331.1|1525896_1526001_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
WP_061773703.1|1526146_1527013_-	YitT family protein	NA	M1Q1P6	Streptococcus_phage	39.9	3.7e-49
WP_061773702.1|1527293_1528211_-	YitT family protein	NA	NA	NA	NA	NA
WP_061773701.1|1528177_1529920_-|tRNA	aspartate--tRNA ligase	tRNA	A0A2K9L424	Tupanvirus	26.9	5.7e-17
>prophage 96
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	1534883	1544109	2295672		Streptococcus_phage(40.0%)	8	NA	NA
WP_061773694.1|1534883_1536146_-	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	41.0	1.3e-84
WP_061773693.1|1536384_1536783_+	S4 domain-containing protein YaaA	NA	A0A1X9I5V8	Streptococcus_phage	48.6	6.2e-12
WP_061773692.1|1536789_1537875_+	DNA replication/repair protein RecF	NA	NA	NA	NA	NA
WP_061773691.1|1537929_1538868_-	carbamate kinase	NA	NA	NA	NA	NA
WP_061773690.1|1539083_1540427_-	phosphatidylserine decarboxylase	NA	A0A2K9L169	Tupanvirus	27.5	9.1e-31
WP_061773689.1|1540486_1541584_-	agmatine deiminase	NA	M1HCB6	Acanthocystis_turfacea_Chlorella_virus	49.7	2.2e-99
WP_061773688.1|1541644_1543012_-	amino acid permease	NA	NA	NA	NA	NA
WP_061773687.1|1543086_1544109_-	putrescine carbamoyltransferase	NA	M1HWF9	Paramecium_bursaria_Chlorella_virus	27.3	1.3e-16
>prophage 97
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	1549537	1550791	2295672	tRNA	Serratia_phage(100.0%)	1	NA	NA
WP_061773684.1|1549537_1550791_+|tRNA	tyrosine--tRNA ligase	tRNA	A0A1S6UA79	Serratia_phage	42.9	3.8e-79
>prophage 98
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	1555296	1556706	2295672		Mycobacterium_phage(100.0%)	1	NA	NA
WP_061773679.1|1555296_1556706_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	27.9	8.7e-24
>prophage 99
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	1567156	1569688	2295672		Acinetobacter_phage(100.0%)	1	NA	NA
WP_061773670.1|1567156_1569688_-	M1 family metallopeptidase	NA	A0A0P0IY26	Acinetobacter_phage	27.1	1.3e-67
>prophage 100
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	1574771	1589672	2295672	tRNA	uncultured_virus(28.57%)	12	NA	NA
WP_061773660.1|1574771_1576064_-	adenylosuccinate synthase	NA	G5CQQ4	Megavirus	37.1	6.6e-71
WP_061773659.1|1576546_1577065_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061773658.1|1577209_1577470_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061773657.1|1577672_1579304_-	chaperonin GroEL	NA	A0A219YK78	uncultured_virus	58.1	2.2e-156
WP_061773656.1|1579371_1579656_-	co-chaperone GroES	NA	A0A221S331	uncultured_virus	34.4	1.7e-08
WP_061773653.1|1581022_1581418_-	single-stranded DNA-binding protein	NA	A0A1X9I6R5	Streptococcus_phage	40.9	1.4e-24
WP_061773652.1|1581489_1582113_-|tRNA	DUF4479 and tRNA-binding domain-containing protein	tRNA	NA	NA	NA	NA
WP_061773651.1|1582142_1582460_-	thioredoxin family protein	NA	A0A0K2FIM3	Achromobacter_phage	32.1	3.4e-05
WP_061773650.1|1582472_1582772_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061773649.1|1582910_1583996_+	glutamyl aminopeptidase	NA	NA	NA	NA	NA
WP_061773648.1|1584049_1586974_-	hypothetical protein	NA	A0A2K9V347	Faecalibacterium_phage	37.2	6.8e-15
WP_144259867.1|1587167_1589672_-	hypothetical protein	NA	D6PSS2	Lactobacillus_phage	29.8	1.1e-13
>prophage 101
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	1593674	1605710	2295672		Catovirus(33.33%)	12	NA	NA
WP_061773643.1|1593674_1594610_-	glycosyltransferase family 2 protein	NA	V9QJB1	Oenococcus_phage	48.9	3.9e-81
WP_061773642.1|1594929_1596096_-	nucleotide sugar dehydrogenase	NA	A0A1J0FA55	Only_Syngen_Nebraska_virus	49.1	6.1e-100
WP_061773641.1|1596146_1597067_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061773640.1|1597066_1598476_-	oligosaccharide flippase family protein	NA	NA	NA	NA	NA
WP_061773639.1|1598462_1599467_-	NAD-dependent epimerase	NA	A0A1D8EQC0	Escherichia_phage	24.0	8.9e-23
WP_061773638.1|1599477_1600464_-	alpha-1,2-fucosyltransferase	NA	A0A2H4UUT1	Bodo_saltans_virus	30.4	3.9e-15
WP_163604802.1|1600465_1601539_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_061773636.1|1601573_1602548_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_082785326.1|1602544_1603498_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	40.0	2.3e-12
WP_061773634.1|1603531_1603900_-	DUF2304 domain-containing protein	NA	NA	NA	NA	NA
WP_061773633.1|1603902_1604628_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_061773632.1|1604759_1605710_-	NAD-dependent epimerase/dehydratase family protein	NA	A0A1V0SAI6	Catovirus	35.1	3.6e-42
>prophage 102
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	1609687	1611860	2295672		Catovirus(50.0%)	2	NA	NA
WP_061773629.1|1609687_1610656_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	40.4	1.1e-09
WP_061773628.1|1610657_1611860_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.3	1.4e-11
>prophage 103
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	1615001	1618488	2295672		Enterobacteria_phage(50.0%)	4	NA	NA
WP_061773624.1|1615001_1615856_-	dTDP-4-dehydrorhamnose reductase	NA	I7HXC9	Enterobacteria_phage	36.6	4.1e-29
WP_061773623.1|1615852_1616902_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	44.7	1.1e-71
WP_061773622.1|1617018_1617612_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	H9NC63	Sphingomonas_phage	32.3	5.6e-09
WP_061773621.1|1617615_1618488_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	K7QKA7	Escherichia_phage	63.3	1.5e-103
>prophage 104
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	1634099	1637022	2295672	transposase	uncultured_Mediterranean_phage(50.0%)	4	NA	NA
WP_061773606.1|1634099_1634582_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	33.3	1.4e-18
WP_061773605.1|1634578_1635040_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_061773604.1|1635002_1635569_-	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_163604757.1|1635768_1637022_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	35.7	1.7e-63
>prophage 105
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	1644562	1646638	2295672		Streptococcus_phage(100.0%)	1	NA	NA
WP_061775507.1|1644562_1646638_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	27.4	9.0e-62
>prophage 106
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	1665084	1665981	2295672		Staphylococcus_phage(100.0%)	1	NA	NA
WP_061775166.1|1665084_1665981_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	31.5	2.6e-21
>prophage 107
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	1672228	1677351	2295672		Klosneuvirus(50.0%)	5	NA	NA
WP_061775120.1|1672228_1673710_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.1	4.9e-94
WP_061775121.1|1673929_1674607_-	DUF1275 domain-containing protein	NA	NA	NA	NA	NA
WP_061775122.1|1674671_1675334_-	DNA alkylation repair protein	NA	NA	NA	NA	NA
WP_061775123.1|1675330_1675807_-	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_061775124.1|1676103_1677351_+	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	26.0	1.5e-06
>prophage 108
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	1681108	1733410	2295672	bacteriocin,integrase,tRNA,transposase	Streptococcus_phage(40.0%)	50	1690766:1690780	1737124:1737138
WP_061775130.1|1681108_1681855_-|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	tRNA	NA	NA	NA	NA
WP_061775131.1|1682118_1682619_+	NUDIX domain-containing protein	NA	NA	NA	NA	NA
WP_061775143.1|1682626_1683463_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_061775132.1|1683474_1683963_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_061775133.1|1684133_1684943_+	putative ABC transporter permease	NA	NA	NA	NA	NA
WP_061775134.1|1685124_1686096_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_061775135.1|1686148_1686958_-	HAD family hydrolase	NA	NA	NA	NA	NA
WP_061775136.1|1687038_1687782_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_061775137.1|1687939_1689037_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061775138.1|1689023_1689527_-	RNA polymerase sigma factor	NA	NA	NA	NA	NA
1690766:1690780	attL	AAAACTGCCATCGTC	NA	NA	NA	NA
WP_061775139.1|1690951_1691800_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_061775140.1|1691786_1693262_+	amidase	NA	NA	NA	NA	NA
WP_061775141.1|1693390_1693708_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_061775142.1|1693841_1694801_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
WP_144259917.1|1696238_1697174_-|transposase	IS30 family transposase	transposase	H7BUM7	unidentified_phage	36.5	4.5e-37
WP_061775459.1|1697435_1698557_-	class C sortase	NA	NA	NA	NA	NA
WP_061775458.1|1698553_1699750_-	class C sortase	NA	NA	NA	NA	NA
WP_061775457.1|1699831_1701319_-	SpaH/EbpB family LPXTG-anchored major pilin	NA	NA	NA	NA	NA
WP_061775456.1|1701382_1702114_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_061775460.1|1702115_1704767_-	Cna B-type domain-containing protein	NA	NA	NA	NA	NA
WP_163604804.1|1705310_1706309_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_061775527.1|1707166_1708069_+	LytR family transcriptional regulator	NA	NA	NA	NA	NA
WP_082785457.1|1708017_1708362_-	hypothetical protein	NA	A0A1X9I5T2	Streptococcus_phage	70.9	2.6e-14
WP_163604805.1|1708389_1708677_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096824104.1|1708673_1709351_-	hypothetical protein	NA	A0A1X9I5T2	Streptococcus_phage	57.1	3.0e-67
WP_001048115.1|1709460_1710459_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_061775347.1|1710850_1711747_-	exopolysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_082785443.1|1711791_1713633_-	flippase	NA	NA	NA	NA	NA
WP_061775346.1|1713734_1714712_-	glycosyltransferase	NA	A0A1V0SAH6	Catovirus	41.1	1.4e-09
WP_061775345.1|1714708_1715902_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061775344.1|1715885_1716974_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_061775343.1|1716985_1717999_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061775342.1|1718031_1719108_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_163604806.1|1719107_1719614_-	serine acetyltransferase	NA	NA	NA	NA	NA
WP_061775340.1|1719623_1720115_-	multidrug MFS transporter	NA	NA	NA	NA	NA
WP_058212379.1|1720114_1720564_-	UDP-N-acetylglucosamine--LPS N-acetylglucosamine transferase	NA	NA	NA	NA	NA
WP_061775339.1|1720567_1721254_-	sugar transferase	NA	NA	NA	NA	NA
WP_061775338.1|1721275_1722040_-	tyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_061775337.1|1722094_1722790_-	polysaccharide biosynthesis tyrosine autokinase	NA	NA	NA	NA	NA
WP_061775336.1|1722799_1723579_-	polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_061775335.1|1723618_1724386_-	hypothetical protein	NA	NA	NA	NA	NA
WP_163604776.1|1725023_1726022_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_163604807.1|1726135_1727188_+	hypothetical protein	NA	NA	NA	NA	NA
WP_156470241.1|1727209_1727383_+	hypothetical protein	NA	NA	NA	NA	NA
WP_163604808.1|1727379_1729797_+	hypothetical protein	NA	NA	NA	NA	NA
WP_163604809.1|1729907_1730966_+	CHAP domain-containing protein	NA	Q4Z9D9	Staphylococcus_phage	42.0	4.4e-12
WP_163604810.1|1730969_1731485_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031367040.1|1731523_1731754_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003137379.1|1731860_1732121_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_031367039.1|1732195_1733410_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
1737124:1737138	attR	AAAACTGCCATCGTC	NA	NA	NA	NA
>prophage 109
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	1741775	1742501	2295672		Staphylococcus_phage(100.0%)	1	NA	NA
WP_061775252.1|1741775_1742501_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.0	3.8e-15
>prophage 110
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	1747127	1748581	2295672		Staphylococcus_phage(100.0%)	2	NA	NA
WP_061775256.1|1747127_1747670_-	SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	42.2	6.9e-30
WP_061775257.1|1747663_1748581_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	55.1	5.6e-40
>prophage 111
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	1756748	1822206	2295672	tRNA,protease,transposase	Streptococcus_phage(25.0%)	55	NA	NA
WP_061774571.1|1756748_1757525_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A2K9VCL2	Lactobacillus_phage	45.4	3.9e-10
WP_061774570.1|1757605_1759486_-	acyltransferase	NA	B5WZU0	Pseudomonas_phage	28.4	1.0e-16
WP_061774569.1|1759482_1760214_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061774568.1|1760294_1762337_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	H8ZJI5	Ostreococcus_tauri_virus	47.3	2.2e-108
WP_061774567.1|1762485_1763034_-	hypoxanthine phosphoribosyltransferase	NA	A0A1V0SEQ1	Hokovirus	27.1	8.3e-07
WP_061774566.1|1763043_1764282_-|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
WP_061774565.1|1764278_1765601_-	serine hydrolase	NA	NA	NA	NA	NA
WP_061774564.1|1765578_1767018_-	4-hydroxyphenylacetate 3-hydroxylase	NA	NA	NA	NA	NA
WP_061774563.1|1767017_1767347_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061774562.1|1767343_1767730_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061774561.1|1767837_1768098_-	RNA-binding S4 domain-containing protein	NA	NA	NA	NA	NA
WP_061774560.1|1768415_1769288_+	DUF3324 domain-containing protein	NA	NA	NA	NA	NA
WP_061774559.1|1769391_1769586_+	DUF951 domain-containing protein	NA	NA	NA	NA	NA
WP_061774558.1|1769636_1770752_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_061774557.1|1770860_1771430_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_061774556.1|1771426_1774927_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
WP_082785396.1|1774895_1776362_+	oligosaccharide flippase family protein	NA	NA	NA	NA	NA
WP_061774554.1|1776409_1780063_-	helicase-exonuclease AddAB subunit AddA	NA	S5M596	Bacillus_phage	25.3	3.8e-23
WP_061774553.1|1780046_1783391_-	ATP-dependent nuclease subunit B	NA	NA	NA	NA	NA
WP_061774552.1|1783457_1784600_-	DNA polymerase III subunit beta	NA	A0A0A8IL17	Aurantimonas_phage	23.0	7.3e-21
WP_061774551.1|1784771_1786142_-	chromosomal replication initiator protein DnaA	NA	A0A0A8IKB2	Aurantimonas_phage	43.5	2.3e-05
WP_061774550.1|1786502_1787264_-	ParB/RepB/Spo0J family partition protein	NA	A0A2K9V477	Faecalibacterium_phage	31.4	7.7e-11
WP_061774549.1|1787321_1788362_+	glycerate kinase	NA	NA	NA	NA	NA
WP_061774548.1|1788402_1789359_-	rhodanese-related sulfurtransferase	NA	NA	NA	NA	NA
WP_061774547.1|1789506_1790052_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_061774546.1|1790092_1790839_-	DUF975 family protein	NA	NA	NA	NA	NA
WP_061774545.1|1791037_1791394_+	preprotein translocase subunit YajC	NA	NA	NA	NA	NA
WP_061774544.1|1791606_1792353_+	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	41.0	1.5e-22
WP_061774543.1|1792349_1793144_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_061774542.1|1793248_1794424_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_163604845.1|1794528_1795767_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_061774540.1|1795816_1796566_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_061774539.1|1796799_1797222_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061774538.1|1797232_1797976_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061774537.1|1798022_1799855_+	hypothetical protein	NA	NA	NA	NA	NA
WP_082785394.1|1800703_1802557_+|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
WP_163604757.1|1802689_1803943_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	35.7	1.7e-63
WP_061775536.1|1804961_1805288_+	hypothetical protein	NA	NA	NA	NA	NA
WP_144259915.1|1805425_1805899_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061775514.1|1807327_1808677_-	FAD-dependent oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	50.7	7.1e-116
WP_061775515.1|1808694_1809081_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002355386.1|1809106_1809730_-	cysteine hydrolase	NA	NA	NA	NA	NA
WP_163604811.1|1809756_1809921_-	hypothetical protein	NA	NA	NA	NA	NA
WP_082785454.1|1810003_1810570_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_163604812.1|1810779_1811460_-|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	84.1	3.8e-110
WP_061775525.1|1811944_1814059_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	K4FB40	Cronobacter_phage	38.7	2.6e-117
WP_047916692.1|1815071_1815752_-|transposase	IS6-like element ISS1N family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	84.1	5.0e-110
WP_163604813.1|1815802_1815955_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002375364.1|1816098_1816443_+	PadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_061775510.1|1816432_1817254_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061775509.1|1817359_1817950_+	recombinase family protein	NA	A0A1V0E035	Clostridioides_phage	32.0	4.7e-16
WP_003139954.1|1818628_1819870_-	OFA family MFS transporter	NA	NA	NA	NA	NA
WP_163604814.1|1820426_1821179_-	universal stress protein	NA	NA	NA	NA	NA
WP_163604813.1|1821322_1821475_-	hypothetical protein	NA	NA	NA	NA	NA
WP_163604815.1|1821525_1822206_+|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	84.5	5.5e-109
>prophage 112
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	1825516	1876184	2295672	bacteriocin,tRNA,transposase	Streptococcus_phage(18.18%)	46	NA	NA
WP_163604816.1|1825516_1826407_-|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_011680633.1|1826519_1826690_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061775488.1|1826713_1828369_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_011680635.1|1828471_1829530_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004261408.1|1829529_1830483_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_061775487.1|1830479_1832177_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	3.2e-17
WP_163604817.1|1832309_1832504_-	hypothetical protein	NA	NA	NA	NA	NA
WP_163604818.1|1832668_1833667_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_061775549.1|1833845_1834775_-	alpha-L-glutamate ligase	NA	NA	NA	NA	NA
WP_163604819.1|1834794_1836009_-	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA	NA
WP_061775553.1|1838282_1839257_-	TDT family transporter	NA	NA	NA	NA	NA
WP_003131454.1|1839558_1840509_-	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
WP_163604820.1|1840890_1841499_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_047916768.1|1841746_1841986_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_061775530.1|1842015_1842576_+	alkaline shock response membrane anchor protein AmaP	NA	NA	NA	NA	NA
WP_047916766.1|1842585_1842774_+	DUF2273 domain-containing protein	NA	NA	NA	NA	NA
WP_082785458.1|1842794_1843358_+	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
WP_061775558.1|1844785_1845673_+	EamA family transporter	NA	NA	NA	NA	NA
WP_163604821.1|1845900_1846581_+|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	84.1	1.1e-109
WP_061775570.1|1846910_1847249_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_061775532.1|1847976_1849197_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_061775533.1|1849189_1850083_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	32.1	2.5e-24
WP_144259914.1|1850222_1850606_-	hypothetical protein	NA	NA	NA	NA	NA
WP_163604822.1|1850666_1851665_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_003108064.1|1851827_1852250_-	cupin domain-containing protein	NA	Q2I8C5	Bacillus_phage	61.0	3.1e-38
WP_000221326.1|1852465_1853425_+|transposase	IS30-like element IS6770 family transposase	transposase	NA	NA	NA	NA
WP_096824114.1|1853532_1854375_+	AraC family transcriptional regulator	NA	D0R0F8	Streptococcus_phage	49.8	2.7e-73
WP_031367166.1|1855235_1855541_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_061775277.1|1855543_1856131_+	recombinase family protein	NA	A0A219YA40	Aeromonas_phage	36.6	1.2e-19
WP_061775278.1|1856204_1856678_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_061775279.1|1856971_1857640_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	34.4	3.6e-36
WP_061775280.1|1857627_1859022_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_082785439.1|1859203_1860016_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
WP_061775281.1|1860015_1860231_+	DUF2933 domain-containing protein	NA	NA	NA	NA	NA
WP_061775290.1|1860487_1861879_+	multicopper oxidase family protein	NA	NA	NA	NA	NA
WP_156470234.1|1862006_1862144_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031367159.1|1862598_1864686_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	31.5	5.7e-64
WP_061775283.1|1864913_1865150_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061775285.1|1865809_1866985_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_061775286.1|1867105_1867861_+	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_082785440.1|1868123_1868975_-	glycerophosphodiester phosphodiesterase	NA	A0A0S2MYI4	Enterococcus_phage	34.0	3.2e-13
WP_061775287.1|1868958_1869597_-	HD domain-containing protein	NA	A0A1S5XYU7	Kurlavirus	32.4	1.8e-13
WP_061775288.1|1869596_1870619_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_163604764.1|1871242_1872241_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_163604837.1|1872411_1873791_+|transposase	ISNCY family transposase	transposase	NA	NA	NA	NA
WP_061775321.1|1874561_1876184_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	25.1	1.7e-47
>prophage 113
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	1880828	1888336	2295672		Wolbachia_phage(33.33%)	9	NA	NA
WP_061775325.1|1880828_1881821_-	virulence RhuM family protein	NA	Q9JMN3	Wolbachia_phage	43.5	1.2e-67
WP_061775326.1|1882279_1883281_+	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_061775327.1|1883281_1883530_+	acyl carrier protein	NA	NA	NA	NA	NA
WP_061775328.1|1883614_1884388_-	NUDIX hydrolase	NA	A0A142EZP1	Stenotrophomonas_phage	31.8	1.7e-10
WP_061775329.1|1884676_1885747_+	FAD:protein FMN transferase	NA	NA	NA	NA	NA
WP_061775330.1|1885758_1886037_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061775331.1|1886096_1886282_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061775332.1|1886286_1887012_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061775333.1|1887079_1888336_-	replication-associated recombination protein A	NA	A0A127AWE7	Bacillus_phage	47.1	1.0e-92
>prophage 114
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	1895269	1897480	2295672		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_061774688.1|1895269_1897480_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	35.5	1.0e-10
>prophage 115
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	1909962	1917536	2295672		Staphylococcus_phage(40.0%)	10	NA	NA
WP_061774702.1|1909962_1910727_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.0	2.1e-16
WP_061774703.1|1910726_1911437_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	25.6	4.1e-14
WP_061774704.1|1911549_1912209_+	CBS domain-containing protein	NA	M1NSC5	Streptococcus_phage	58.3	6.8e-64
WP_061774705.1|1912391_1912931_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061774706.1|1913061_1913799_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_061774707.1|1913898_1914255_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_061774708.1|1914238_1915066_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	32.3	3.9e-24
WP_061774709.1|1915075_1916086_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138492354.1|1916096_1916327_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061774711.1|1916396_1917536_+	molecular chaperone DnaJ	NA	Q8QNB4	Ectocarpus_siliculosus_virus	25.9	2.9e-14
>prophage 116
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	1931209	1932160	2295672	transposase	unidentified_phage(100.0%)	1	NA	NA
WP_163604799.1|1931209_1932160_+|transposase	IS30 family transposase	transposase	H7BUM7	unidentified_phage	34.0	1.9e-35
>prophage 117
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	1936126	1951350	2295672	transposase	Staphylococcus_phage(16.67%)	9	NA	NA
WP_061775506.1|1936126_1936981_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	39.5	1.8e-53
WP_138492594.1|1937197_1938577_-|transposase	ISNCY family transposase	transposase	NA	NA	NA	NA
WP_061774912.1|1939721_1942406_+	cation-translocating P-type ATPase	NA	M1IAU8	Acanthocystis_turfacea_Chlorella_virus	31.1	2.4e-83
WP_061774911.1|1942638_1943130_+	RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_061774910.1|1943116_1944118_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061774909.1|1944530_1947125_+	ATP-dependent chaperone ClpB	NA	A0A2I7SAX5	Vibrio_phage	36.0	5.3e-128
WP_061774908.1|1947314_1949561_+	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	63.4	2.7e-269
WP_061774914.1|1949683_1950520_+	energy-coupling factor transporter ATPase	NA	G3M9Y6	Bacillus_virus	30.9	4.8e-22
WP_061774907.1|1950495_1951350_+	energy-coupling factor transporter ATPase	NA	W8CYL7	Bacillus_phage	32.1	1.2e-12
>prophage 118
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	1962902	1979135	2295672	transposase,integrase	Lactococcus_phage(75.0%)	20	1963590:1963610	1975747:1975767
WP_096824068.1|1962902_1963598_-	helix-turn-helix domain-containing protein	NA	Q4ZD53	Staphylococcus_phage	68.7	1.2e-18
1963590:1963610	attL	TTTTTTCATATTACTTTTATA	NA	NA	NA	NA
WP_061774896.1|1963846_1964302_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061774895.1|1965135_1965447_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061774894.1|1965690_1966155_-	hypothetical protein	NA	Q9AZI4	Lactococcus_phage	47.2	4.0e-10
WP_061774893.1|1966592_1968230_-	DNA primase	NA	Q9AZI5	Lactococcus_phage	73.0	1.3e-236
WP_061774892.1|1968240_1969041_-	hypothetical protein	NA	Q9AZI6	Lactococcus_phage	67.4	1.9e-108
WP_061774891.1|1969045_1969375_-	HTH domain-containing protein	NA	Q9AZI7	Lactococcus_phage	70.8	1.1e-35
WP_061774890.1|1969415_1969832_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061774889.1|1969844_1970129_-	hypothetical protein	NA	Q9AZJ1	Lactococcus_phage	56.8	2.6e-20
WP_061774888.1|1970133_1970406_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_061774887.1|1970402_1970657_-	hypothetical protein	NA	A0A1P8BMH2	Lactococcus_phage	47.2	2.4e-09
WP_061774886.1|1970653_1970836_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061774885.1|1970904_1971603_-	hypothetical protein	NA	R9QNB1	Lactococcus_phage	55.8	7.7e-58
WP_156470227.1|1971614_1971785_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061774884.1|1971932_1972850_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_061774883.1|1973505_1974348_+	DNA damage-inducible protein D	NA	A0A1W6JPJ7	Morganella_phage	55.2	2.2e-59
WP_061774882.1|1974472_1975663_+|integrase	site-specific integrase	integrase	Q9AZK8	Lactococcus_phage	46.9	3.1e-91
WP_163604824.1|1976009_1977263_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	35.7	2.2e-63
1975747:1975767	attR	TTTTTTCATATTACTTTTATA	NA	NA	NA	NA
WP_061774293.1|1977363_1978746_-	MATE family efflux transporter	NA	NA	NA	NA	NA
WP_003138831.1|1978937_1979135_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	75.4	1.3e-23
>prophage 119
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	1983900	1985358	2295672		Pandoravirus(100.0%)	1	NA	NA
WP_061774300.1|1983900_1985358_+	glycoside hydrolase family 1 protein	NA	A0A0B5JD41	Pandoravirus	32.2	2.4e-53
>prophage 120
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	2000959	2007698	2295672		Clostridium_phage(50.0%)	3	NA	NA
WP_061774314.1|2000959_2005354_+	PolC-type DNA polymerase III	NA	A0A0A7RWA3	Clostridium_phage	34.6	6.9e-19
WP_061774315.1|2005494_2005857_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061774316.1|2005853_2007698_+	acyltransferase	NA	C6ZR20	Salmonella_phage	24.6	1.9e-18
>prophage 121
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	2041506	2044255	2295672		Oenococcus_phage(50.0%)	2	NA	NA
WP_061774343.1|2041506_2042436_-	glycosyltransferase family 2 protein	NA	V5USA4	Oenococcus_phage	46.3	4.5e-69
WP_061774344.1|2042551_2044255_+	acetolactate synthase large subunit	NA	E5EQ70	Micromonas_sp._RCC1109_virus	29.4	2.5e-57
>prophage 122
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	2062774	2063632	2295672		Streptococcus_phage(100.0%)	1	NA	NA
WP_061774211.1|2062774_2063632_-	DegV family protein	NA	A0A1X9I5J4	Streptococcus_phage	25.0	1.4e-13
>prophage 123
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	2073720	2075902	2295672		Escherichia_phage(50.0%)	2	NA	NA
WP_061774200.1|2073720_2074746_+	3-deoxy-7-phosphoheptulonate synthase	NA	A0A067ZJG7	Escherichia_phage	35.4	6.7e-50
WP_061774199.1|2074873_2075902_+	3-deoxy-7-phosphoheptulonate synthase	NA	S4VUY9	Pandoravirus	34.1	8.2e-40
>prophage 124
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	2079166	2088598	2295672	tRNA	Vibrio_phage(40.0%)	10	NA	NA
WP_061774196.1|2079166_2079955_+	pyruvate formate lyase-activating protein	NA	A0A2D0YQB2	Vibrio_phage	34.2	3.5e-06
WP_061774195.1|2080096_2081026_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	33.3	1.2e-10
WP_061774194.1|2081018_2082332_+	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA	NA	NA	NA	NA
WP_061774193.1|2082462_2083209_+	Stp1/IreP family PP2C-type Ser/Thr phosphatase	NA	NA	NA	NA	NA
WP_061774192.1|2083210_2085127_+	Stk1 family PASTA domain-containing Ser/Thr kinase	NA	A0A1V0SDC3	Indivirus	31.9	2.5e-21
WP_061774191.1|2085286_2085556_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_082785369.1|2085709_2086072_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_061774190.1|2086064_2086565_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_061774189.1|2086598_2087174_+	GTP cyclohydrolase I FolE	NA	A0A2I7S8W4	Vibrio_phage	46.6	1.3e-39
WP_156470217.1|2087656_2088598_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	26.2	2.4e-09
>prophage 125
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	2096179	2107998	2295672		Bacillus_virus(33.33%)	12	NA	NA
WP_061774180.1|2096179_2096959_-	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	31.6	1.1e-28
WP_061774179.1|2097255_2098629_+	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A2K9L821	Tupanvirus	34.9	6.0e-30
WP_082785366.1|2098706_2099270_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_061774178.1|2099262_2099535_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061774177.1|2099601_2100282_+	5'-methylthioadenosine/adenosylhomocysteine nucleosidase	NA	NA	NA	NA	NA
WP_061774176.1|2100285_2101725_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	41.6	6.2e-94
WP_061774175.1|2101721_2102549_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	56.0	5.3e-74
WP_061774174.1|2102545_2103112_+	nicotinate-nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_061774173.1|2103233_2104553_+	aminopeptidase C	NA	R4TV59	Phaeocystis_globosa_virus	33.2	3.6e-64
WP_163604826.1|2105319_2105772_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061774171.1|2105768_2106449_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061774170.1|2106534_2107998_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.8	1.5e-55
>prophage 126
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	2116248	2129168	2295672	tRNA	Orpheovirus(20.0%)	11	NA	NA
WP_061774163.1|2116248_2117940_+|tRNA	arginine--tRNA ligase	tRNA	A0A2I2L3K1	Orpheovirus	35.2	1.7e-79
WP_061774162.1|2117998_2118475_+	arginine repressor	NA	NA	NA	NA	NA
WP_061774161.1|2118455_2118833_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061774221.1|2118867_2121384_+	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	23.3	2.4e-40
WP_061774160.1|2121744_2121951_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061774159.1|2121959_2122256_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061774158.1|2122334_2122829_-	hypothetical protein	NA	A0A097BYE2	Leuconostoc_phage	32.4	4.1e-05
WP_061774157.1|2123088_2123409_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_061774156.1|2125057_2126980_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	31.8	1.3e-67
WP_061774155.1|2127105_2127687_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_096824032.1|2128193_2129168_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	34.2	1.2e-08
>prophage 127
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	2134270	2140138	2295672	transposase	Streptococcus_phage(50.0%)	6	NA	NA
WP_163604757.1|2134270_2135524_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	35.7	1.7e-63
WP_061775448.1|2135674_2136892_-	voltage-gated chloride channel protein	NA	A0A1X9I5Z9	Streptococcus_phage	47.7	2.0e-85
WP_061775449.1|2136888_2137158_-	chorismate mutase	NA	NA	NA	NA	NA
WP_061775450.1|2137215_2137716_+	GAF domain-containing protein	NA	NA	NA	NA	NA
WP_061775451.1|2137712_2139341_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	43.2	6.9e-49
WP_061775452.1|2139397_2140138_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	9.4e-30
>prophage 128
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	2144043	2144991	2295672	transposase	unidentified_phage(100.0%)	1	NA	NA
WP_061775560.1|2144043_2144991_-|transposase	IS30 family transposase	transposase	H7BVY4	unidentified_phage	32.7	5.8e-32
>prophage 129
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	2153248	2157612	2295672		Streptococcus_phage(100.0%)	6	NA	NA
WP_061775366.1|2153248_2153758_+	single-stranded DNA-binding protein	NA	W6LM61	Streptococcus_phage	67.8	2.1e-52
WP_003140392.1|2153806_2154052_+	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_061775367.1|2154226_2154538_-	DUF960 domain-containing protein	NA	NA	NA	NA	NA
WP_061775368.1|2154703_2155417_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_061775369.1|2155443_2156238_-	recombination regulator RecX	NA	NA	NA	NA	NA
WP_061775370.1|2156274_2157612_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	E4ZFI6	Streptococcus_phage	33.0	3.3e-65
>prophage 130
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	2165380	2168044	2295672	tRNA	Catovirus(100.0%)	1	NA	NA
WP_061774650.1|2165380_2168044_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	39.5	9.3e-144
>prophage 131
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	2173273	2177265	2295672		Bacillus_phage(66.67%)	3	NA	NA
WP_061774656.1|2173273_2174992_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.3	1.2e-46
WP_061774657.1|2174984_2176742_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.0	1.5e-41
WP_061774658.1|2176818_2177265_+	dUTP diphosphatase	NA	Q332E8	Clostridium_botulinum_C_phage	49.3	7.9e-32
>prophage 132
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	2191698	2194812	2295672		Bathycoccus_sp._RCC1105_virus(100.0%)	1	NA	NA
WP_061774671.1|2191698_2194812_+	DEAD/DEAH box helicase family protein	NA	E5ER62	Bathycoccus_sp._RCC1105_virus	30.6	8.3e-43
>prophage 133
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	2202063	2203317	2295672	transposase	Streptococcus_phage(100.0%)	1	NA	NA
WP_163604828.1|2202063_2203317_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	35.7	3.4e-64
>prophage 134
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	2212763	2213951	2295672		Staphylococcus_phage(100.0%)	1	NA	NA
WP_061775271.1|2212763_2213951_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	67.6	2.9e-145
>prophage 135
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	2230271	2233070	2295672	tRNA	Orpheovirus(100.0%)	1	NA	NA
WP_061775085.1|2230271_2233070_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A2I2L3Y0	Orpheovirus	27.6	2.5e-91
>prophage 136
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	2257710	2260364	2295672		Streptococcus_phage(100.0%)	3	NA	NA
WP_061775305.1|2257710_2258973_+	DNA (cytosine-5-)-methyltransferase	NA	A0A1S5SFL7	Streptococcus_phage	39.4	3.5e-24
WP_163604829.1|2259599_2259965_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
WP_031367059.1|2260022_2260364_-	helix-turn-helix transcriptional regulator	NA	A0A1S5SFC6	Streptococcus_phage	36.8	1.3e-10
>prophage 137
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	2263695	2265285	2295672		Streptococcus_phage(100.0%)	1	NA	NA
WP_061775299.1|2263695_2265285_+	hypothetical protein	NA	A0A1S5SFB5	Streptococcus_phage	29.6	2.6e-37
>prophage 138
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	2275362	2287070	2295672	tRNA,integrase	Klosneuvirus(33.33%)	12	2268600:2268613	2281482:2281495
2268600:2268613	attL	AGAAAAATAAGAAA	NA	NA	NA	NA
WP_163604832.1|2275362_2276424_+	CHAP domain-containing protein	NA	Q4Z9D9	Staphylococcus_phage	27.7	2.8e-11
WP_163604833.1|2276427_2276943_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061774851.1|2277048_2277273_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061774852.1|2277326_2278490_+|integrase	site-specific integrase	integrase	C9E2L6	Enterococcus_phage	36.2	6.8e-51
WP_061774853.1|2278660_2279572_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_061774854.1|2279558_2280824_+	GTPase HflX	NA	NA	NA	NA	NA
WP_061774855.1|2280798_2281473_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061774856.1|2281469_2282366_+	SPFH domain-containing protein	NA	A0A1V0SL90	Klosneuvirus	36.7	4.1e-35
2281482:2281495	attR	TTTCTTATTTTTCT	NA	NA	NA	NA
WP_061774857.1|2282664_2283606_+	ribonuclease Z	NA	NA	NA	NA	NA
WP_061774858.1|2283602_2284334_+	SDR family NAD(P)-dependent oxidoreductase	NA	W8CYX9	Bacillus_phage	38.7	5.9e-08
WP_061774859.1|2284330_2286556_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	31.6	1.3e-74
WP_061774860.1|2286557_2287070_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.1	2.0e-31
>prophage 139
NZ_CP048686	Lactococcus raffinolactis strain KACC 13441 chromosome, complete genome	2295672	2291387	2293581	2295672		Streptococcus_phage(100.0%)	2	NA	NA
WP_061774865.1|2291387_2292833_-	Y-family DNA polymerase	NA	Q6DMX4	Streptococcus_phage	58.6	8.3e-155
WP_061774866.1|2292879_2293581_-	helix-turn-helix transcriptional regulator	NA	A0A1S5SD15	Streptococcus_phage	48.1	2.8e-55
