assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_010669265.1_ASM1066926v1	NZ_CP048643	Staphylococcus aureus strain SR153 chromosome, complete genome	1	196635-196719	1	CRISPRCasFinder	no		WYL,RT,csa3,cas3,DEDDh,DinG	Orphan	CACCCCAACTTGCATTGTCTGTAGAA	26	1	2	196661-196693|196661-196693	NZ_CP048643.1_1622155-1622123|NZ_CP048643.1_1710463-1710495	NA	1	1	Orphan	WYL,RT,csa3,cas3,DEDDh,DinG	NA|68aa|up_0|NZ_CP048643.1_196369_196573_+,NA|402aa|down_9|NZ_CP048643.1_206367_207573_-	NA|2392aa|up_9|NZ_CP048643.1_180776_187952_-	PRK12467, PRK12467, peptide synthase; Provisional	NA|417aa|up_8|NZ_CP048643.1_188398_189649_-	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|342aa|up_7|NZ_CP048643.1_190034_191060_-	PRK07574, PRK07574, NAD-dependent formate dehydrogenase	NA|120aa|up_6|NZ_CP048643.1_191233_191593_-	COG5609, COG5609, Uncharacterized conserved protein [Function unknown]	NA|344aa|up_5|NZ_CP048643.1_191809_192841_-	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|254aa|up_4|NZ_CP048643.1_192853_193615_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|324aa|up_3|NZ_CP048643.1_193611_194583_-	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily	NA|247aa|up_2|NZ_CP048643.1_194596_195337_-	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|171aa|up_1|NZ_CP048643.1_195678_196191_-	pfam14026, DUF4242, Protein of unknown function (DUF4242)	NA|68aa|up_0|NZ_CP048643.1_196369_196573_+	NA	NA|320aa|down_0|NZ_CP048643.1_196867_197827_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|496aa|down_1|NZ_CP048643.1_198473_199961_-	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like	NA|128aa|down_2|NZ_CP048643.1_200387_200771_+	pfam04304, DUF454, Protein of unknown function (DUF454)	NA|109aa|down_3|NZ_CP048643.1_200777_201104_+	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI	NA|382aa|down_4|NZ_CP048643.1_201168_202314_-	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|421aa|down_5|NZ_CP048643.1_202390_203653_-	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|296aa|down_6|NZ_CP048643.1_203706_204594_-	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs	NA|186aa|down_7|NZ_CP048643.1_204593_205151_-	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane]	NA|402aa|down_8|NZ_CP048643.1_205161_206367_-	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|402aa|down_9|NZ_CP048643.1_206367_207573_-	NA
GCF_010669265.1_ASM1066926v1	NZ_CP048643	Staphylococcus aureus strain SR153 chromosome, complete genome	2	624111-624244	1	PILER-CR	no		WYL,RT,csa3,cas3,DEDDh,DinG	Orphan	TATTGAAGAAGATACAA	17	2	2	624128-624173|624191-624227	NZ_CP048643.1_620478-620523|NZ_CP048643.1_620541-620577	NA	2	2	Orphan	WYL,RT,csa3,cas3,DEDDh,DinG	NA|67aa|up_1|NZ_CP048643.1_617654_617855_+,NA|78aa|down_5|NZ_CP048643.1_633696_633930_+,NA|103aa|down_6|NZ_CP048643.1_634036_634345_-,NA|89aa|down_7|NZ_CP048643.1_634488_634755_-	NA|426aa|up_9|NZ_CP048643.1_607651_608929_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|608aa|up_8|NZ_CP048643.1_609405_611229_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_7|NZ_CP048643.1_611367_611784_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_6|NZ_CP048643.1_612014_612707_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|255aa|up_5|NZ_CP048643.1_612871_613636_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|227aa|up_4|NZ_CP048643.1_613788_614469_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_3|NZ_CP048643.1_614492_616046_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_2|NZ_CP048643.1_616162_617521_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|67aa|up_1|NZ_CP048643.1_617654_617855_+	NA	NA|1039aa|up_0|NZ_CP048643.1_617989_621106_+	pfam10425, SdrG_C_C, C-terminus of bacterial fibrinogen-binding adhesin	NA|440aa|down_0|NZ_CP048643.1_624880_626200_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|289aa|down_1|NZ_CP048643.1_626372_627239_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|248aa|down_2|NZ_CP048643.1_627449_628193_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|119aa|down_3|NZ_CP048643.1_628516_628873_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|988aa|down_4|NZ_CP048643.1_629177_632141_+	pfam18483, Bact_lectin, Bacterial lectin	NA|78aa|down_5|NZ_CP048643.1_633696_633930_+	NA	NA|103aa|down_6|NZ_CP048643.1_634036_634345_-	NA	NA|89aa|down_7|NZ_CP048643.1_634488_634755_-	NA	NA|603aa|down_8|NZ_CP048643.1_635038_636847_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|131aa|down_9|NZ_CP048643.1_636978_637371_+	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)
GCF_010669265.1_ASM1066926v1	NZ_CP048643	Staphylococcus aureus strain SR153 chromosome, complete genome	3	700794-700872	2	CRISPRCasFinder	no		WYL,RT,csa3,cas3,DEDDh,DinG	Orphan	TGCAAGTTGGCGGGGCCCCAACA	23	1	8	700817-700849|700817-700849|700817-700849|700817-700849|700817-700849|700817-700849|700817-700849|700817-700849	NZ_CP048643.1_1147736-1147704|NZ_CP048643.1_2356986-2357018|NZ_CP048643.1_1087720-1087688|NZ_CP048643.1_2357042-2357074|NZ_CP048643.1_2357098-2357130|NZ_CP048643.1_2357154-2357186|NZ_CP048643.1_2357210-2357242|NZ_CP048643.1_2357266-2357298	NA	1	1	Orphan	WYL,RT,csa3,cas3,DEDDh,DinG	NA|220aa|up_3|NZ_CP048643.1_697718_698378_-,NA|36aa|up_0|NZ_CP048643.1_700367_700475_+,NA	NA|693aa|up_9|NZ_CP048643.1_690179_692258_-	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|470aa|up_8|NZ_CP048643.1_692396_693806_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|269aa|up_7|NZ_CP048643.1_694091_694898_+	TIGR03729, acc_ester, putative phosphoesterase	NA|219aa|up_6|NZ_CP048643.1_694960_695617_-	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]	NA|158aa|up_5|NZ_CP048643.1_695729_696203_+	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown]	NA|404aa|up_4|NZ_CP048643.1_696325_697537_-	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|220aa|up_3|NZ_CP048643.1_697718_698378_-	NA	NA|381aa|up_2|NZ_CP048643.1_698437_699580_-	TIGR00045, Glycerate_kinase, glycerate kinase	NA|129aa|up_1|NZ_CP048643.1_699847_700234_+	COG2246, COG2246, Predicted membrane protein [Function unknown]	NA|36aa|up_0|NZ_CP048643.1_700367_700475_+	NA	NA|588aa|down_0|NZ_CP048643.1_701177_702941_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|578aa|down_1|NZ_CP048643.1_702965_704699_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|229aa|down_2|NZ_CP048643.1_705151_705838_+	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism]	NA|453aa|down_3|NZ_CP048643.1_705815_707174_+	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|336aa|down_4|NZ_CP048643.1_707175_708183_+	PRK06256, PRK06256, biotin synthase; Validated	NA|372aa|down_5|NZ_CP048643.1_708160_709276_+	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|231aa|down_6|NZ_CP048643.1_709286_709979_+	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|156aa|down_7|NZ_CP048643.1_709989_710457_+	pfam06177, QueT, QueT transporter	NA|326aa|down_8|NZ_CP048643.1_710508_711486_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|316aa|down_9|NZ_CP048643.1_711487_712435_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family
GCF_010669265.1_ASM1066926v1	NZ_CP048643	Staphylococcus aureus strain SR153 chromosome, complete genome	4	865532-865612	3	CRISPRCasFinder	no		WYL,RT,csa3,cas3,DEDDh,DinG	Orphan	CAAGTTGGCGGGGCCCCAACACAGA	25	1	17	865557-865587|865557-865587|865557-865587|865557-865587|865557-865587|865557-865587|865557-865587|865557-865587|865557-865587|865557-865587|865557-865587|865557-865587|865557-865587|865557-865587|865557-865587|865557-865587|865557-865587	NZ_CP048643.1_2357046-2357076|NZ_CP048643.1_2357102-2357132|NZ_CP048643.1_2357158-2357188|NZ_CP048643.1_2357214-2357244|NZ_CP048643.1_2357270-2357300|NZ_CP048643.1_1147732-1147702|NZ_CP048643.1_1313497-1313467|NZ_CP048643.1_1710537-1710507|NZ_CP048643.1_2223916-2223886|NZ_CP048643.1_2536395-2536365|NZ_CP048643.1_2800124-2800094|NZ_CP048643.1_295153-295183|NZ_CP048643.1_876358-876388|NZ_CP048643.1_1416046-1416076|NZ_CP048643.1_1622081-1622111|NZ_CP048643.1_1906426-1906456|NZ_CP048643.1_2356990-2357020	NA	1	1	Orphan	WYL,RT,csa3,cas3,DEDDh,DinG	NA,NA|62aa|down_0|NZ_CP048643.1_865653_865839_-,NA|84aa|down_5|NZ_CP048643.1_868978_869230_-,NA|106aa|down_8|NZ_CP048643.1_874351_874669_-,NA|55aa|down_9|NZ_CP048643.1_874913_875078_-	NA|224aa|up_9|NZ_CP048643.1_857753_858425_+	COG4149, ModC, ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism]	NA|202aa|up_8|NZ_CP048643.1_858425_859031_+	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|335aa|up_7|NZ_CP048643.1_859200_860205_+	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|169aa|up_6|NZ_CP048643.1_860235_860742_+	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|165aa|up_5|NZ_CP048643.1_860743_861238_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|162aa|up_4|NZ_CP048643.1_862555_863041_+	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|149aa|up_3|NZ_CP048643.1_863054_863501_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|78aa|up_2|NZ_CP048643.1_863506_863740_+	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|200aa|up_1|NZ_CP048643.1_863746_864346_+	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|341aa|up_0|NZ_CP048643.1_864365_865388_+	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|62aa|down_0|NZ_CP048643.1_865653_865839_-	NA	NA|117aa|down_1|NZ_CP048643.1_865964_866315_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|404aa|down_2|NZ_CP048643.1_866416_867628_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|147aa|down_3|NZ_CP048643.1_867620_868061_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|255aa|down_4|NZ_CP048643.1_868222_868987_+	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|84aa|down_5|NZ_CP048643.1_868978_869230_-	NA	NA|422aa|down_6|NZ_CP048643.1_869618_870884_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|1056aa|down_7|NZ_CP048643.1_871000_874168_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|106aa|down_8|NZ_CP048643.1_874351_874669_-	NA	NA|55aa|down_9|NZ_CP048643.1_874913_875078_-	NA
GCF_010669265.1_ASM1066926v1	NZ_CP048643	Staphylococcus aureus strain SR153 chromosome, complete genome	5	971655-971740	4	CRISPRCasFinder	no	csa3	WYL,RT,csa3,cas3,DEDDh,DinG	Type I-A	ACTAATGATACGCAAAAATCAGTTGG	26	0	0	NA	NA	NA	1	1	Orphan	WYL,RT,csa3,cas3,DEDDh,DinG	NA,NA|53aa|down_7|NZ_CP048643.1_982702_982861_-,NA|35aa|down_9|NZ_CP048643.1_983540_983645_+	NA|396aa|up_9|NZ_CP048643.1_946902_948090_+	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc	NA|228aa|up_8|NZ_CP048643.1_948108_948792_+	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|448aa|up_7|NZ_CP048643.1_948967_950311_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|up_6|NZ_CP048643.1_950409_950883_+	pfam17080, SepA, Multidrug Resistance efflux pump	NA|481aa|up_5|NZ_CP048643.1_951205_952648_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|355aa|up_4|NZ_CP048643.1_952795_953860_+	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|303aa|up_3|NZ_CP048643.1_960098_961007_+	cd09989, Arginase, Arginase family	NA|270aa|up_2|NZ_CP048643.1_961195_962005_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|311aa|up_1|NZ_CP048643.1_962006_962939_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|452aa|up_0|NZ_CP048643.1_962965_964321_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|369aa|down_0|NZ_CP048643.1_972362_973469_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|down_1|NZ_CP048643.1_973468_973903_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|down_2|NZ_CP048643.1_973914_976047_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|down_3|NZ_CP048643.1_976081_977620_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|down_4|NZ_CP048643.1_978300_980106_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|down_5|NZ_CP048643.1_980337_981120_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|down_6|NZ_CP048643.1_981187_982045_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|53aa|down_7|NZ_CP048643.1_982702_982861_-	NA	NA|57aa|down_8|NZ_CP048643.1_982853_983024_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|35aa|down_9|NZ_CP048643.1_983540_983645_+	NA
GCF_010669265.1_ASM1066926v1	NZ_CP048643	Staphylococcus aureus strain SR153 chromosome, complete genome	6	983980-984061	5	CRISPRCasFinder	no	csa3	WYL,RT,csa3,cas3,DEDDh,DinG	Type I-A	AAGAAGCCCCTAACAACTAAAGTTG	25	0	0	NA	NA	NA	1	1	Orphan	WYL,RT,csa3,cas3,DEDDh,DinG	NA|53aa|up_2|NZ_CP048643.1_982702_982861_-,NA|35aa|up_0|NZ_CP048643.1_983540_983645_+,NA|364aa|down_0|NZ_CP048643.1_984077_985169_-,NA|77aa|down_5|NZ_CP048643.1_988955_989186_+	NA|369aa|up_9|NZ_CP048643.1_972362_973469_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|up_8|NZ_CP048643.1_973468_973903_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|up_7|NZ_CP048643.1_973914_976047_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|up_6|NZ_CP048643.1_976081_977620_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|up_5|NZ_CP048643.1_978300_980106_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|up_4|NZ_CP048643.1_980337_981120_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_3|NZ_CP048643.1_981187_982045_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|53aa|up_2|NZ_CP048643.1_982702_982861_-	NA	NA|57aa|up_1|NZ_CP048643.1_982853_983024_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|35aa|up_0|NZ_CP048643.1_983540_983645_+	NA	NA|364aa|down_0|NZ_CP048643.1_984077_985169_-	NA	NA|326aa|down_1|NZ_CP048643.1_985434_986412_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|NZ_CP048643.1_986413_986734_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|NZ_CP048643.1_986885_987551_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|NZ_CP048643.1_987986_988925_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|NZ_CP048643.1_988955_989186_+	NA	NA|458aa|down_6|NZ_CP048643.1_989857_991231_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|NZ_CP048643.1_991687_992101_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|NZ_CP048643.1_992299_992743_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|NZ_CP048643.1_992863_993574_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
GCF_010669265.1_ASM1066926v1	NZ_CP048643	Staphylococcus aureus strain SR153 chromosome, complete genome	7	1111622-1111711	6	CRISPRCasFinder	no		WYL,RT,csa3,cas3,DEDDh,DinG	Orphan	TGATTGAGAAGTCAGTCGAAAAAC	24	0	0	NA	NA	NA	1	1	Orphan	WYL,RT,csa3,cas3,DEDDh,DinG	NA,NA|49aa|down_2|NZ_CP048643.1_1112264_1112411_+,NA|50aa|down_3|NZ_CP048643.1_1112463_1112613_+,NA|127aa|down_6|NZ_CP048643.1_1115907_1116288_+,NA|114aa|down_8|NZ_CP048643.1_1117375_1117717_+,NA|193aa|down_9|NZ_CP048643.1_1117728_1118307_+	NA|188aa|up_9|NZ_CP048643.1_1102035_1102599_-	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]	NA|45aa|up_8|NZ_CP048643.1_1102834_1102969_+	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|262aa|up_7|NZ_CP048643.1_1103568_1104354_-	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|209aa|up_6|NZ_CP048643.1_1104714_1105341_-	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|390aa|up_5|NZ_CP048643.1_1105537_1106707_+	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|248aa|up_4|NZ_CP048643.1_1106731_1107475_-	pfam02517, Abi, CAAX protease self-immunity	NA|95aa|up_3|NZ_CP048643.1_1107649_1107934_+	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|539aa|up_2|NZ_CP048643.1_1108009_1109626_+	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|391aa|up_1|NZ_CP048643.1_1109694_1110867_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|225aa|up_0|NZ_CP048643.1_1110880_1111555_-	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|73aa|down_0|NZ_CP048643.1_1111727_1111946_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|106aa|down_1|NZ_CP048643.1_1111950_1112268_+	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|49aa|down_2|NZ_CP048643.1_1112264_1112411_+	NA	NA|50aa|down_3|NZ_CP048643.1_1112463_1112613_+	NA	NA|109aa|down_4|NZ_CP048643.1_1112615_1112942_+	pfam07342, DUF1474, Protein of unknown function (DUF1474)	NA|290aa|down_5|NZ_CP048643.1_1113006_1113876_+	smart00942, PriCT_1, Primase C terminal 1 (PriCT-1)	NA|127aa|down_6|NZ_CP048643.1_1115907_1116288_+	NA	NA|214aa|down_7|NZ_CP048643.1_1116284_1116926_+	pfam16560, SAPI, Putative mobile pathogenicity island	NA|114aa|down_8|NZ_CP048643.1_1117375_1117717_+	NA	NA|193aa|down_9|NZ_CP048643.1_1117728_1118307_+	NA
GCF_010669265.1_ASM1066926v1	NZ_CP048643	Staphylococcus aureus strain SR153 chromosome, complete genome	8	1147365-1147446	7	CRISPRCasFinder	no		WYL,RT,csa3,cas3,DEDDh,DinG	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	1	1147389-1147422	NZ_CP048643.1_1622155-1622122	NA	1	1	Orphan	WYL,RT,csa3,cas3,DEDDh,DinG	NA|38aa|up_1|NZ_CP048643.1_1146267_1146381_+,NA	NA|206aa|up_9|NZ_CP048643.1_1141121_1141739_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|NZ_CP048643.1_1141893_1142388_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|NZ_CP048643.1_1142786_1143209_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|NZ_CP048643.1_1143356_1144073_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|NZ_CP048643.1_1144155_1144695_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|NZ_CP048643.1_1144845_1145166_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|NZ_CP048643.1_1145309_1145666_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|NZ_CP048643.1_1145823_1146204_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|NZ_CP048643.1_1146267_1146381_+	NA	NA|293aa|up_0|NZ_CP048643.1_1146382_1147261_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP048643.1_1148058_1148445_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP048643.1_1148437_1148734_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP048643.1_1148983_1150009_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP048643.1_1150001_1150697_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP048643.1_1150714_1151536_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NZ_CP048643.1_1151889_1152084_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NZ_CP048643.1_1152317_1153169_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NZ_CP048643.1_1153496_1154258_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NZ_CP048643.1_1154355_1155663_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|417aa|down_9|NZ_CP048643.1_1155768_1157019_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_010669265.1_ASM1066926v1	NZ_CP048643	Staphylococcus aureus strain SR153 chromosome, complete genome	9	1410536-1410697	2	PILER-CR	no		WYL,RT,csa3,cas3,DEDDh,DinG	Orphan	GACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCGAAAAGTCAG	49	1	1	1410586-1410609	NZ_CP048643.1_1410512-1410535	NA	2	2	Orphan	WYL,RT,csa3,cas3,DEDDh,DinG	NA|56aa|up_5|NZ_CP048643.1_1406227_1406395_+,NA|169aa|up_2|NZ_CP048643.1_1408357_1408864_+,NA|62aa|down_0|NZ_CP048643.1_1410885_1411071_-,NA|78aa|down_1|NZ_CP048643.1_1411692_1411926_-,NA|49aa|down_4|NZ_CP048643.1_1415554_1415701_+,NA|75aa|down_5|NZ_CP048643.1_1415657_1415882_+	NA|272aa|up_9|NZ_CP048643.1_1403153_1403969_+	PRK08640, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|267aa|up_8|NZ_CP048643.1_1404204_1405005_+	PRK00865, PRK00865, glutamate racemase; Provisional	NA|196aa|up_7|NZ_CP048643.1_1405016_1405604_+	PRK14822, PRK14822, XTP/dITP diphosphatase	NA|168aa|up_6|NZ_CP048643.1_1405596_1406100_+	COG0622, COG0622, Predicted phosphoesterase [General function prediction only]	NA|56aa|up_5|NZ_CP048643.1_1406227_1406395_+	NA	NA|110aa|up_4|NZ_CP048643.1_1406588_1406918_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|134aa|up_3|NZ_CP048643.1_1407286_1407688_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|169aa|up_2|NZ_CP048643.1_1408357_1408864_+	NA	NA|166aa|up_1|NZ_CP048643.1_1409123_1409621_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_0|NZ_CP048643.1_1409769_1410120_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|62aa|down_0|NZ_CP048643.1_1410885_1411071_-	NA	NA|78aa|down_1|NZ_CP048643.1_1411692_1411926_-	NA	NA|440aa|down_2|NZ_CP048643.1_1412444_1413764_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|320aa|down_3|NZ_CP048643.1_1413922_1414882_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|49aa|down_4|NZ_CP048643.1_1415554_1415701_+	NA	NA|75aa|down_5|NZ_CP048643.1_1415657_1415882_+	NA	NA|239aa|down_6|NZ_CP048643.1_1416371_1417088_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_7|NZ_CP048643.1_1417195_1417921_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_8|NZ_CP048643.1_1418015_1418741_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_9|NZ_CP048643.1_1419178_1420180_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional
GCF_010669265.1_ASM1066926v1	NZ_CP048643	Staphylococcus aureus strain SR153 chromosome, complete genome	10	1891762-1891846	8	CRISPRCasFinder	no		WYL,RT,csa3,cas3,DEDDh,DinG	Orphan	CACCCCAACTTGCATTGTCTGTAGAA	26	1	1	1891788-1891820	NZ_CP048643.1_1622155-1622123	NA	1	1	Orphan	WYL,RT,csa3,cas3,DEDDh,DinG	NA,NA	NA|228aa|up_9|NZ_CP048643.1_1880972_1881656_-	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]	NA|59aa|up_8|NZ_CP048643.1_1881899_1882076_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|449aa|up_7|NZ_CP048643.1_1882368_1883715_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|251aa|up_6|NZ_CP048643.1_1883721_1884474_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|313aa|up_5|NZ_CP048643.1_1884475_1885414_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|380aa|up_4|NZ_CP048643.1_1885417_1886557_-	PRK14280, PRK14280, molecular chaperone DnaJ	NA|611aa|up_3|NZ_CP048643.1_1886692_1888525_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|209aa|up_2|NZ_CP048643.1_1888593_1889220_-	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|326aa|up_1|NZ_CP048643.1_1889251_1890229_-	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|375aa|up_0|NZ_CP048643.1_1890328_1891453_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|608aa|down_0|NZ_CP048643.1_1892018_1893842_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|84aa|down_1|NZ_CP048643.1_1894187_1894439_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|325aa|down_2|NZ_CP048643.1_1894483_1895458_-	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|716aa|down_3|NZ_CP048643.1_1895514_1897662_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|154aa|down_4|NZ_CP048643.1_1897720_1898182_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|229aa|down_5|NZ_CP048643.1_1898273_1898960_-	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|239aa|down_6|NZ_CP048643.1_1898999_1899716_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|118aa|down_7|NZ_CP048643.1_1899718_1900072_-	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|195aa|down_8|NZ_CP048643.1_1900072_1900657_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|190aa|down_9|NZ_CP048643.1_1900646_1901216_-	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase
GCF_010669265.1_ASM1066926v1	NZ_CP048643	Staphylococcus aureus strain SR153 chromosome, complete genome	11	2326413-2326494	9	CRISPRCasFinder	no		WYL,RT,csa3,cas3,DEDDh,DinG	Orphan	GGCCCCCACCCCAACTTACATTGT	24	1	5	2326437-2326470|2326437-2326470|2326437-2326470|2326437-2326470|2326437-2326470	NZ_CP048643.1_1410478-1410445|NZ_CP048643.1_2370101-2370068|NZ_CP048643.1_2018504-2018471|NZ_CP048643.1_1626494-1626527|NZ_CP048643.1_425677-425644	NA	1	1	Orphan	WYL,RT,csa3,cas3,DEDDh,DinG	NA|87aa|up_9|NZ_CP048643.1_2317335_2317596_-,NA|62aa|up_6|NZ_CP048643.1_2318879_2319065_+,NA|56aa|up_5|NZ_CP048643.1_2319264_2319432_+,NA|114aa|down_6|NZ_CP048643.1_2334300_2334642_-,NA|193aa|down_9|NZ_CP048643.1_2335458_2336037_-	NA|87aa|up_9|NZ_CP048643.1_2317335_2317596_-	NA	NA|80aa|up_8|NZ_CP048643.1_2317608_2317848_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|236aa|up_7|NZ_CP048643.1_2318018_2318726_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|62aa|up_6|NZ_CP048643.1_2318879_2319065_+	NA	NA|56aa|up_5|NZ_CP048643.1_2319264_2319432_+	NA	NA|180aa|up_4|NZ_CP048643.1_2319571_2320111_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|346aa|up_3|NZ_CP048643.1_2320283_2321321_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|339aa|up_2|NZ_CP048643.1_2322439_2323456_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|352aa|up_1|NZ_CP048643.1_2323477_2324533_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|408aa|up_0|NZ_CP048643.1_2324968_2326192_+	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|436aa|down_0|NZ_CP048643.1_2326635_2327943_+	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|241aa|down_1|NZ_CP048643.1_2328959_2329682_+	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|267aa|down_2|NZ_CP048643.1_2329850_2330651_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|187aa|down_3|NZ_CP048643.1_2331438_2331999_+	cd15783, SA1633_like, Uncharacterized protein family conserved in Staphylococci	NA|229aa|down_4|NZ_CP048643.1_2332893_2333580_+	PRK13038, PRK13038, superantigen-like protein; Reviewed	NA|190aa|down_5|NZ_CP048643.1_2333734_2334304_-	COG3728, XtmA, Phage terminase, small subunit [DNA replication, recombination, and repair]	NA|114aa|down_6|NZ_CP048643.1_2334300_2334642_-	NA	NA|176aa|down_7|NZ_CP048643.1_2334644_2335172_-	COG5577, COG5577, Spore coat protein [Cell envelope biogenesis, outer membrane]	NA|73aa|down_8|NZ_CP048643.1_2335222_2335441_-	pfam16722, SAPIS-gp6, Pathogenicity island protein gp6 in Staphylococcus	NA|193aa|down_9|NZ_CP048643.1_2335458_2336037_-	NA
GCF_010669265.1_ASM1066926v1	NZ_CP048643	Staphylococcus aureus strain SR153 chromosome, complete genome	12	2364367-2364697	1	CRT	no	cas3	WYL,RT,csa3,cas3,DEDDh,DinG	Unclear	TTCTACAGNCAATGCNAGTTGGGGTGTGGGCCCCAACA	38	5	35	2364405-2364424|2364405-2364424|2364405-2364424|2364405-2364424|2364405-2364424|2364405-2364424|2364405-2364424|2364405-2364424|2364405-2364424|2364405-2364424|2364405-2364424|2364405-2364424|2364405-2364424|2364405-2364424|2364405-2364424|2364405-2364424|2364405-2364424|2364405-2364424|2364405-2364424|2364463-2364483|2364463-2364483|2364463-2364483|2364522-2364542|2364522-2364542|2364522-2364542|2364581-2364600|2364581-2364600|2364581-2364600|2364639-2364659|2364639-2364659|2364639-2364659|2364639-2364659|2364639-2364659|2364639-2364659|2364639-2364659	NZ_CP048643.1_1410451-1410470|NZ_CP048643.1_1906365-1906384|NZ_CP048643.1_2077239-2077258|NZ_CP048643.1_2411918-2411937|NZ_CP048643.1_73495-73476|NZ_CP048643.1_196739-196720|NZ_CP048643.1_1147466-1147447|NZ_CP048643.1_1313443-1313424|NZ_CP048643.1_1891866-1891847|NZ_CP048643.1_2225262-2225243|NZ_CP048643.1_2536457-2536438|NZ_CP048643.1_1416100-1416119|NZ_CP048643.1_2018477-2018496|NZ_CP048643.1_73550-73531|NZ_CP048643.1_73605-73586|NZ_CP048643.1_1217509-1217490|NZ_CP048643.1_1626521-1626502|NZ_CP048643.1_1672010-1671991|NZ_CP048643.1_1926127-1926108|NZ_CP048643.1_2364346-2364366|NZ_CP048643.1_2326523-2326503|NZ_CP048643.1_2410781-2410761|NZ_CP048643.1_2364346-2364366|NZ_CP048643.1_2326523-2326503|NZ_CP048643.1_2410781-2410761|NZ_CP048643.1_425650-425669|NZ_CP048643.1_2234612-2234593|NZ_CP048643.1_2169568-2169549|NZ_CP048643.1_876354-876374|NZ_CP048643.1_1416042-1416062|NZ_CP048643.1_1622077-1622097|NZ_CP048643.1_1710541-1710521|NZ_CP048643.1_2223861-2223841|NZ_CP048643.1_2223920-2223900|NZ_CP048643.1_2536399-2536379	NA	5	5	Unclear	WYL,RT,csa3,cas3,DEDDh,DinG	NA,NA|36aa|down_8|NZ_CP048643.1_2377576_2377684_-	NA|254aa|up_9|NZ_CP048643.1_2352245_2353007_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|397aa|up_8|NZ_CP048643.1_2353128_2354319_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|337aa|up_7|NZ_CP048643.1_2354457_2355468_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|338aa|up_6|NZ_CP048643.1_2355520_2356534_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|210aa|up_5|NZ_CP048643.1_2357514_2358144_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|301aa|up_4|NZ_CP048643.1_2358845_2359748_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|up_3|NZ_CP048643.1_2359990_2360578_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|up_2|NZ_CP048643.1_2361140_2362085_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|up_1|NZ_CP048643.1_2362195_2363191_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|up_0|NZ_CP048643.1_2363187_2364099_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|down_0|NZ_CP048643.1_2365043_2365979_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|down_1|NZ_CP048643.1_2366045_2367485_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|down_2|NZ_CP048643.1_2367492_2367978_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|280aa|down_3|NZ_CP048643.1_2367985_2368825_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|down_4|NZ_CP048643.1_2368830_2369763_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|down_5|NZ_CP048643.1_2370426_2373273_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|down_6|NZ_CP048643.1_2373280_2375266_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|79aa|down_7|NZ_CP048643.1_2375534_2375771_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|36aa|down_8|NZ_CP048643.1_2377576_2377684_-	NA	NA|370aa|down_9|NZ_CP048643.1_2377837_2378948_-	PRK00578, prfB, peptide chain release factor 2; Validated
GCF_010669265.1_ASM1066926v1	NZ_CP048643	Staphylococcus aureus strain SR153 chromosome, complete genome	13	2370022-2370100	10	CRISPRCasFinder	no	cas3	WYL,RT,csa3,cas3,DEDDh,DinG	Unclear	AGAATTTCGAAAAGAAATTCTACA	24	1	3	2370046-2370076|2370046-2370076|2370046-2370076	NZ_CP048643.1_73523-73493|NZ_CP048643.1_73578-73548|NZ_CP048643.1_1926274-1926244	NA	1	1	Unclear	WYL,RT,csa3,cas3,DEDDh,DinG	NA,NA|36aa|down_3|NZ_CP048643.1_2377576_2377684_-,NA|35aa|down_5|NZ_CP048643.1_2379116_2379221_-	NA|301aa|up_9|NZ_CP048643.1_2358845_2359748_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|up_8|NZ_CP048643.1_2359990_2360578_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|up_7|NZ_CP048643.1_2361140_2362085_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|up_6|NZ_CP048643.1_2362195_2363191_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|up_5|NZ_CP048643.1_2363187_2364099_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|up_4|NZ_CP048643.1_2365043_2365979_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|up_3|NZ_CP048643.1_2366045_2367485_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|up_2|NZ_CP048643.1_2367492_2367978_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|280aa|up_1|NZ_CP048643.1_2367985_2368825_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|up_0|NZ_CP048643.1_2368830_2369763_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|down_0|NZ_CP048643.1_2370426_2373273_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|down_1|NZ_CP048643.1_2373280_2375266_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|79aa|down_2|NZ_CP048643.1_2375534_2375771_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|36aa|down_3|NZ_CP048643.1_2377576_2377684_-	NA	NA|370aa|down_4|NZ_CP048643.1_2377837_2378948_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|35aa|down_5|NZ_CP048643.1_2379116_2379221_-	NA	NA|844aa|down_6|NZ_CP048643.1_2379262_2381794_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|191aa|down_7|NZ_CP048643.1_2382207_2382780_-	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|225aa|down_8|NZ_CP048643.1_2382840_2383515_-	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	cas3|361aa|down_9|NZ_CP048643.1_2383507_2384590_-	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
GCF_010669265.1_ASM1066926v1	NZ_CP048643	Staphylococcus aureus strain SR153 chromosome, complete genome	14	2759767-2759869	11	CRISPRCasFinder	no		WYL,RT,csa3,cas3,DEDDh,DinG	Orphan	CAAATTTAATACTCAATTCATATA	24	0	0	NA	NA	NA	1	1	Orphan	WYL,RT,csa3,cas3,DEDDh,DinG	NA|159aa|up_7|NZ_CP048643.1_2751445_2751922_+,NA|221aa|up_1|NZ_CP048643.1_2758013_2758676_+,NA|33aa|down_1|NZ_CP048643.1_2762064_2762163_-,NA|128aa|down_7|NZ_CP048643.1_2768410_2768794_+,NA|70aa|down_9|NZ_CP048643.1_2769618_2769828_+	NA|91aa|up_9|NZ_CP048643.1_2749619_2749892_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|235aa|up_8|NZ_CP048643.1_2750290_2750995_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|159aa|up_7|NZ_CP048643.1_2751445_2751922_+	NA	NA|514aa|up_6|NZ_CP048643.1_2752034_2753576_-	PRK00074, guaA, GMP synthase; Reviewed	NA|489aa|up_5|NZ_CP048643.1_2753600_2755067_-	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|423aa|up_4|NZ_CP048643.1_2755104_2756373_-	TIGR03173, pbuX, xanthine permease	NA|193aa|up_3|NZ_CP048643.1_2756372_2756951_-	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|136aa|up_2|NZ_CP048643.1_2757463_2757871_+	pfam11181, YflT, Heat induced stress protein YflT	NA|221aa|up_1|NZ_CP048643.1_2758013_2758676_+	NA	NA|319aa|up_0|NZ_CP048643.1_2758793_2759750_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|440aa|down_0|NZ_CP048643.1_2760081_2761401_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|33aa|down_1|NZ_CP048643.1_2762064_2762163_-	NA	NA|463aa|down_2|NZ_CP048643.1_2762247_2763636_+	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|252aa|down_3|NZ_CP048643.1_2763715_2764471_-	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|190aa|down_4|NZ_CP048643.1_2764962_2765532_+	TIGR03137, AhpC, peroxiredoxin	NA|508aa|down_5|NZ_CP048643.1_2765547_2767071_+	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|209aa|down_6|NZ_CP048643.1_2767514_2768141_+	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|128aa|down_7|NZ_CP048643.1_2768410_2768794_+	NA	NA|194aa|down_8|NZ_CP048643.1_2768859_2769441_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|70aa|down_9|NZ_CP048643.1_2769618_2769828_+	NA
