assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_010727325.1_ASM1072732v1	NZ_AP022565	Mycolicibacterium alvei strain JCM 12272	1	1450973-1451052	1	CRISPRCasFinder	no	csa3	csa3,DEDDh,WYL,c2c9_V-U4,cas3,DinG	Type I-A	GGCGGCTGACTGAGCGCTCGCGCGAAG	27	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,WYL,c2c9_V-U4,cas3,DinG	NA,NA|225aa|down_1|NZ_AP022565.1_1451695_1452370_-	NA|369aa|up_9|NZ_AP022565.1_1435698_1436805_-	COG3376, HoxN, High-affinity nickel permease [Inorganic ion transport and metabolism]	csa3|110aa|up_8|NZ_AP022565.1_1436863_1437193_-	COG0640, ArsR, Predicted transcriptional regulators [Transcription]	NA|242aa|up_7|NZ_AP022565.1_1437202_1437928_-	COG2186, FadR, Transcriptional regulators [Transcription]	NA|258aa|up_6|NZ_AP022565.1_1437945_1438719_-	PRK06057, PRK06057, short chain dehydrogenase; Provisional	NA|455aa|up_5|NZ_AP022565.1_1438719_1440084_-	pfam00171, Aldedh, Aldehyde dehydrogenase family	NA|240aa|up_4|NZ_AP022565.1_1440080_1440800_-	COG2071, COG2071, Predicted glutamine amidotransferases [General function prediction only]	NA|456aa|up_3|NZ_AP022565.1_1440825_1442193_-	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism]	NA|530aa|up_2|NZ_AP022565.1_1442382_1443972_+	TIGR00907, Choline_transport_protein, amino acid permease (GABA permease)	NA|1109aa|up_1|NZ_AP022565.1_1443972_1447299_-	COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	NA|602aa|up_0|NZ_AP022565.1_1447396_1449202_+	TIGR03104, trio_amidotrans, asparagine synthase family amidotransferase	NA|188aa|down_0|NZ_AP022565.1_1451067_1451631_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|225aa|down_1|NZ_AP022565.1_1451695_1452370_-	NA	NA|502aa|down_2|NZ_AP022565.1_1452379_1453885_-	PRK00784, PRK00784, cobyric acid synthase	NA|286aa|down_3|NZ_AP022565.1_1453895_1454753_-	PRK12896, PRK12896, methionine aminopeptidase; Reviewed	NA|127aa|down_4|NZ_AP022565.1_1454869_1455250_+	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|196aa|down_5|NZ_AP022565.1_1455263_1455851_-	pfam08044, DUF1707, Domain of unknown function (DUF1707)	NA|608aa|down_6|NZ_AP022565.1_1455874_1457698_-	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]	NA|285aa|down_7|NZ_AP022565.1_1457783_1458638_-	COG3393, COG3393, Predicted acetyltransferase [General function prediction only]	NA|389aa|down_8|NZ_AP022565.1_1458693_1459860_-	PRK00366, ispG, flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA|407aa|down_9|NZ_AP022565.1_1459872_1461093_-	pfam02163, Peptidase_M50, Peptidase family M50
GCF_010727325.1_ASM1072732v1	NZ_AP022565	Mycolicibacterium alvei strain JCM 12272	2	3149678-3149845	2	CRISPRCasFinder	no		csa3,DEDDh,WYL,c2c9_V-U4,cas3,DinG	Orphan	AAGCGTCCCGGCGCCAAGAAGGCCGCGGCACCCGCGGCCTCGGCGGCACCCGCT	54	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,WYL,c2c9_V-U4,cas3,DinG	NA|1826aa|up_8|NZ_AP022565.1_3127753_3133231_-,NA|377aa|up_3|NZ_AP022565.1_3140646_3141777_-,NA|183aa|up_2|NZ_AP022565.1_3142062_3142611_-,NA|74aa|down_0|NZ_AP022565.1_3150193_3150415_-	NA|163aa|up_9|NZ_AP022565.1_3127255_3127744_+	COG3889, COG3889, Predicted solute binding protein [General function prediction only]	NA|1826aa|up_8|NZ_AP022565.1_3127753_3133231_-	NA	NA|312aa|up_7|NZ_AP022565.1_3134334_3135270_+	pfam13338, AbiEi_4, Transcriptional regulator, AbiEi antitoxin	NA|597aa|up_6|NZ_AP022565.1_3135333_3137124_-	cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family	NA|497aa|up_5|NZ_AP022565.1_3137154_3138645_-	COG0699, COG0699, Predicted GTPases (dynamin-related) [General function prediction only]	NA|621aa|up_4|NZ_AP022565.1_3138687_3140550_-	COG0699, COG0699, Predicted GTPases (dynamin-related) [General function prediction only]	NA|377aa|up_3|NZ_AP022565.1_3140646_3141777_-	NA	NA|183aa|up_2|NZ_AP022565.1_3142062_3142611_-	NA	NA|598aa|up_1|NZ_AP022565.1_3142808_3144602_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|831aa|up_0|NZ_AP022565.1_3144612_3147105_+	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|74aa|down_0|NZ_AP022565.1_3150193_3150415_-	NA	NA|430aa|down_1|NZ_AP022565.1_3150621_3151911_+	PRK09265, PRK09265, aminotransferase AlaT; Validated	NA|410aa|down_2|NZ_AP022565.1_3151951_3153181_+	pfam07907, YibE_F, YibE/F-like protein	NA|123aa|down_3|NZ_AP022565.1_3153189_3153558_-	pfam12680, SnoaL_2, SnoaL-like domain	NA|251aa|down_4|NZ_AP022565.1_3153576_3154329_-	TIGR03083, TIGR03083, uncharacterized Actinobacterial protein TIGR03083	NA|439aa|down_5|NZ_AP022565.1_3154330_3155647_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|444aa|down_6|NZ_AP022565.1_3155685_3157017_-	COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|510aa|down_7|NZ_AP022565.1_3157093_3158623_-	PRK14086, dnaA, chromosomal replication initiator protein DnaA	NA|444aa|down_8|NZ_AP022565.1_3158843_3160175_-	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism]	NA|191aa|down_9|NZ_AP022565.1_3160369_3160942_-	PRK00416, dcd, deoxycytidine triphosphate deaminase; Reviewed
GCF_010727325.1_ASM1072732v1	NZ_AP022565	Mycolicibacterium alvei strain JCM 12272	3	3579510-3579646	3	CRISPRCasFinder	no		csa3,DEDDh,WYL,c2c9_V-U4,cas3,DinG	Orphan	CGTCTCCGGACGAAACCTCCGCAACATCACCACCACCTTCA	41	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,WYL,c2c9_V-U4,cas3,DinG	NA|297aa|up_9|NZ_AP022565.1_3568442_3569333_+,NA|196aa|up_7|NZ_AP022565.1_3569697_3570285_+,NA|249aa|up_3|NZ_AP022565.1_3573816_3574563_+,NA|264aa|up_0|NZ_AP022565.1_3577995_3578787_-,NA|321aa|down_0|NZ_AP022565.1_3580400_3581363_-,NA|185aa|down_1|NZ_AP022565.1_3581634_3582189_-	NA|297aa|up_9|NZ_AP022565.1_3568442_3569333_+	NA	NA|107aa|up_8|NZ_AP022565.1_3569325_3569646_+	pfam10824, T7SS_ESX_EspC, Excreted virulence factor EspC, type VII ESX diderm	NA|196aa|up_7|NZ_AP022565.1_3569697_3570285_+	NA	NA|450aa|up_6|NZ_AP022565.1_3570658_3572008_+	TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin	NA|466aa|up_5|NZ_AP022565.1_3572004_3573402_+	TIGR03923, T7SS_EccE, type VII secretion protein EccE	NA|113aa|up_4|NZ_AP022565.1_3573451_3573790_+	pfam02575, YbaB_DNA_bd, YbaB/EbfC DNA-binding family	NA|249aa|up_3|NZ_AP022565.1_3573816_3574563_+	NA	NA|416aa|up_2|NZ_AP022565.1_3574707_3575955_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|501aa|up_1|NZ_AP022565.1_3576220_3577723_-	pfam18625, EspB_PE, ESX-1 secreted protein B PE domain	NA|264aa|up_0|NZ_AP022565.1_3577995_3578787_-	NA	NA|321aa|down_0|NZ_AP022565.1_3580400_3581363_-	NA	NA|185aa|down_1|NZ_AP022565.1_3581634_3582189_-	NA	NA|379aa|down_2|NZ_AP022565.1_3582870_3584007_-	smart00157, PRP, Major prion protein	NA|511aa|down_3|NZ_AP022565.1_3584163_3585696_-	TIGR03920, T7SS_EccD, type VII secretion integral membrane protein EccD	NA|476aa|down_4|NZ_AP022565.1_3585692_3587120_-	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]	NA|96aa|down_5|NZ_AP022565.1_3587249_3587537_-	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|101aa|down_6|NZ_AP022565.1_3587567_3587870_-	pfam06013, WXG100, Proteins of 100 residues with WXG	NA|445aa|down_7|NZ_AP022565.1_3587964_3589299_-	pfam00823, PPE, PPE family	NA|98aa|down_8|NZ_AP022565.1_3589340_3589634_-	pfam00934, PE, PE family	NA|584aa|down_9|NZ_AP022565.1_3589814_3591566_-	TIGR03925, T7SS_EccC_b, type VII secretion protein EccCb
GCF_010727325.1_ASM1072732v1	NZ_AP022565	Mycolicibacterium alvei strain JCM 12272	4	4638073-4638189	4	CRISPRCasFinder	no		csa3,DEDDh,WYL,c2c9_V-U4,cas3,DinG	Orphan	GCCCTGGGGTGGAAAGCGGCGTGCGGGTGGGAT	33	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,WYL,c2c9_V-U4,cas3,DinG	NA,NA|153aa|down_6|NZ_AP022565.1_4644820_4645279_+,NA|108aa|down_7|NZ_AP022565.1_4645460_4645784_+,NA|108aa|down_8|NZ_AP022565.1_4645824_4646148_-	NA|202aa|up_9|NZ_AP022565.1_4627738_4628344_+	TIGR03968, transcriptional_regulator_TetR_family, mycofactocin system transcriptional regulator	NA|519aa|up_8|NZ_AP022565.1_4628393_4629950_+	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|147aa|up_7|NZ_AP022565.1_4630029_4630470_+	cd07819, SRPBCC_2, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|556aa|up_6|NZ_AP022565.1_4630474_4632142_-	COG3961, COG3961, Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]	NA|361aa|up_5|NZ_AP022565.1_4632159_4633242_+	COG1804, CaiB, Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]	NA|300aa|up_4|NZ_AP022565.1_4633301_4634201_+	pfam00582, Usp, Universal stress protein family	NA|292aa|up_3|NZ_AP022565.1_4634193_4635069_+	pfam00582, Usp, Universal stress protein family	NA|150aa|up_2|NZ_AP022565.1_4635133_4635583_+	cd07819, SRPBCC_2, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|390aa|up_1|NZ_AP022565.1_4635583_4636753_-	PRK07777, PRK07777, putative succinyldiaminopimelate transaminase DapC	NA|369aa|up_0|NZ_AP022565.1_4636876_4637983_+	cd02933, OYE_like_FMN, Old yellow enzyme (OYE)-like FMN binding domain	NA|404aa|down_0|NZ_AP022565.1_4638334_4639546_+	PRK08242, PRK08242, acetyl-CoA C-acetyltransferase	NA|716aa|down_1|NZ_AP022565.1_4639557_4641705_+	PRK11730, fadB, fatty acid oxidation complex subunit alpha FadB	NA|196aa|down_2|NZ_AP022565.1_4641979_4642567_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|142aa|down_3|NZ_AP022565.1_4642571_4642997_-	TIGR03618, Rv1155_F420, PPOX class probable F420-dependent enzyme	NA|330aa|down_4|NZ_AP022565.1_4643051_4644041_+	TIGR03560, F420_Rv1855c, probable F420-dependent oxidoreductase, Rv1855c family	NA|236aa|down_5|NZ_AP022565.1_4644021_4644729_-	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|153aa|down_6|NZ_AP022565.1_4644820_4645279_+	NA	NA|108aa|down_7|NZ_AP022565.1_4645460_4645784_+	NA	NA|108aa|down_8|NZ_AP022565.1_4645824_4646148_-	NA	NA|227aa|down_9|NZ_AP022565.1_4646193_4646874_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN
GCF_010727325.1_ASM1072732v1	NZ_AP022565	Mycolicibacterium alvei strain JCM 12272	5	4794394-4794528	5	CRISPRCasFinder	no		csa3,DEDDh,WYL,c2c9_V-U4,cas3,DinG	Orphan	GACGCGGTGCTTCGCCGTTTCCTACCTGAGGGTCGCTGTGCCACGCGATCG	51	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,WYL,c2c9_V-U4,cas3,DinG	NA|264aa|up_9|NZ_AP022565.1_4783020_4783812_-,NA|162aa|up_6|NZ_AP022565.1_4785881_4786367_-,NA|84aa|down_1|NZ_AP022565.1_4795695_4795947_-,NA|225aa|down_6|NZ_AP022565.1_4801826_4802501_+,NA|506aa|down_8|NZ_AP022565.1_4804888_4806406_+	NA|264aa|up_9|NZ_AP022565.1_4783020_4783812_-	NA	NA|98aa|up_8|NZ_AP022565.1_4783827_4784121_-	pfam02152, FolB, Dihydroneopterin aldolase	NA|509aa|up_7|NZ_AP022565.1_4784224_4785751_+	PRK08257, PRK08257, acetyl-CoA acetyltransferase; Validated	NA|162aa|up_6|NZ_AP022565.1_4785881_4786367_-	NA	NA|283aa|up_5|NZ_AP022565.1_4786451_4787300_-	TIGR03619, F420_Rv2161c, probable F420-dependent oxidoreductase, Rv2161c family	NA|378aa|up_4|NZ_AP022565.1_4787430_4788564_+	TIGR04021, LLM_DMSO2_sfnG, dimethyl sulfone monooxygenase SfnG	NA|275aa|up_3|NZ_AP022565.1_4788698_4789523_+	pfam17270, DUF5336, Family of unknown function (DUF5336)	NA|491aa|up_2|NZ_AP022565.1_4789583_4791056_+	PRK10819, PRK10819, transport protein TonB; Provisional	NA|210aa|up_1|NZ_AP022565.1_4791066_4791696_+	PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed	NA|523aa|up_0|NZ_AP022565.1_4791692_4793261_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|338aa|down_0|NZ_AP022565.1_4794627_4795641_-	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|84aa|down_1|NZ_AP022565.1_4795695_4795947_-	NA	NA|121aa|down_2|NZ_AP022565.1_4796072_4796435_+	pfam16525, MHB, Haemophore, haem-binding	NA|617aa|down_3|NZ_AP022565.1_4796444_4798295_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|461aa|down_4|NZ_AP022565.1_4798420_4799803_+	COG1239, ChlI, Mg-chelatase subunit ChlI [Coenzyme metabolism]	NA|663aa|down_5|NZ_AP022565.1_4799795_4801784_+	COG4867, COG4867, Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only]	NA|225aa|down_6|NZ_AP022565.1_4801826_4802501_+	NA	NA|511aa|down_7|NZ_AP022565.1_4802978_4804511_+	PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional	NA|506aa|down_8|NZ_AP022565.1_4804888_4806406_+	NA	NA|194aa|down_9|NZ_AP022565.1_4806683_4807265_-	pfam08044, DUF1707, Domain of unknown function (DUF1707)
