assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_010730055.1_ASM1073005v1	NZ_AP022575	Mycobacterium shinjukuense strain JCM 14233	1	64000-64689	1	CRT	no		cas3,DinG,csa3,RT,DEDDh,cas4,WYL,cas2,cas1,csb3,csb2gr5,cas7	Orphan	CCGTNGCCGCCGNNGCCGCCG	21	0	0	NA	NA	NA	11	11	Orphan	cas3,DinG,csa3,RT,DEDDh,cas4,WYL,cas2,cas1,csb3,csb2gr5,cas7	NA,NA|47aa|down_5|NZ_AP022575.1_80766_80907_+	NA|144aa|up_9|NZ_AP022575.1_51505_51937_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|283aa|up_8|NZ_AP022575.1_51933_52782_+	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis]	NA|94aa|up_7|NZ_AP022575.1_52778_53060_+	pfam10801, DUF2537, Protein of unknown function (DUF2537)	NA|255aa|up_6|NZ_AP022575.1_53130_53895_-	pfam11268, DUF3071, Protein of unknown function (DUF3071)	NA|377aa|up_5|NZ_AP022575.1_54014_55145_-	TIGR01366, Putative_phosphoserine_aminotransferase_PSAT	NA|341aa|up_4|NZ_AP022575.1_55323_56346_+	pfam11583, AurF, P-aminobenzoate N-oxygenase AurF	NA|577aa|up_3|NZ_AP022575.1_56362_58093_+	PLN02852, PLN02852, ferredoxin-NADP+ reductase	NA|153aa|up_2|NZ_AP022575.1_58089_58548_-	cd07246, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|385aa|up_1|NZ_AP022575.1_58746_59901_-	PRK12350, PRK12350, citrate synthase 2; Provisional	NA|220aa|up_0|NZ_AP022575.1_59972_60632_+	PRK05679, PRK05679, pyridoxal 5'-phosphate synthase	NA|3340aa|down_0|NZ_AP022575.1_65836_75856_-	pfam00823, PPE, PPE family	NA|432aa|down_1|NZ_AP022575.1_76493_77789_+	PRK05614, gltA, citrate synthase	NA|531aa|down_2|NZ_AP022575.1_77845_79438_-	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|59aa|down_3|NZ_AP022575.1_79440_79617_-	pfam10944, DUF2630, Protein of unknown function (DUF2630)	NA|340aa|down_4|NZ_AP022575.1_79733_80753_+	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|47aa|down_5|NZ_AP022575.1_80766_80907_+	NA	NA|189aa|down_6|NZ_AP022575.1_80906_81473_+	PRK14547, rplD, 50S ribosomal protein L4; Provisional	NA|447aa|down_7|NZ_AP022575.1_81495_82836_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|237aa|down_8|NZ_AP022575.1_82847_83558_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|421aa|down_9|NZ_AP022575.1_83622_84885_-	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters
GCF_010730055.1_ASM1073005v1	NZ_AP022575	Mycobacterium shinjukuense strain JCM 14233	2	64946-65112	1	PILER-CR	no		cas3,DinG,csa3,RT,DEDDh,cas4,WYL,cas2,cas1,csb3,csb2gr5,cas7	Orphan	ACCCATGCCGCCGGCGCCGCCGGCGCCGCCGTCGCCGCCG	40	0	0	NA	NA	NA	2	2	Orphan	cas3,DinG,csa3,RT,DEDDh,cas4,WYL,cas2,cas1,csb3,csb2gr5,cas7	NA,NA|47aa|down_5|NZ_AP022575.1_80766_80907_+	NA|144aa|up_9|NZ_AP022575.1_51505_51937_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|283aa|up_8|NZ_AP022575.1_51933_52782_+	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis]	NA|94aa|up_7|NZ_AP022575.1_52778_53060_+	pfam10801, DUF2537, Protein of unknown function (DUF2537)	NA|255aa|up_6|NZ_AP022575.1_53130_53895_-	pfam11268, DUF3071, Protein of unknown function (DUF3071)	NA|377aa|up_5|NZ_AP022575.1_54014_55145_-	TIGR01366, Putative_phosphoserine_aminotransferase_PSAT	NA|341aa|up_4|NZ_AP022575.1_55323_56346_+	pfam11583, AurF, P-aminobenzoate N-oxygenase AurF	NA|577aa|up_3|NZ_AP022575.1_56362_58093_+	PLN02852, PLN02852, ferredoxin-NADP+ reductase	NA|153aa|up_2|NZ_AP022575.1_58089_58548_-	cd07246, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|385aa|up_1|NZ_AP022575.1_58746_59901_-	PRK12350, PRK12350, citrate synthase 2; Provisional	NA|220aa|up_0|NZ_AP022575.1_59972_60632_+	PRK05679, PRK05679, pyridoxal 5'-phosphate synthase	NA|3340aa|down_0|NZ_AP022575.1_65836_75856_-	pfam00823, PPE, PPE family	NA|432aa|down_1|NZ_AP022575.1_76493_77789_+	PRK05614, gltA, citrate synthase	NA|531aa|down_2|NZ_AP022575.1_77845_79438_-	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|59aa|down_3|NZ_AP022575.1_79440_79617_-	pfam10944, DUF2630, Protein of unknown function (DUF2630)	NA|340aa|down_4|NZ_AP022575.1_79733_80753_+	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|47aa|down_5|NZ_AP022575.1_80766_80907_+	NA	NA|189aa|down_6|NZ_AP022575.1_80906_81473_+	PRK14547, rplD, 50S ribosomal protein L4; Provisional	NA|447aa|down_7|NZ_AP022575.1_81495_82836_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|237aa|down_8|NZ_AP022575.1_82847_83558_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|421aa|down_9|NZ_AP022575.1_83622_84885_-	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters
GCF_010730055.1_ASM1073005v1	NZ_AP022575	Mycobacterium shinjukuense strain JCM 14233	3	318672-318816	1	CRISPRCasFinder	no		cas3,DinG,csa3,RT,DEDDh,cas4,WYL,cas2,cas1,csb3,csb2gr5,cas7	Orphan	GGCGGCGCCGGCGGCAAGGGCGGC	24	0	0	NA	NA	NA	2	2	Orphan	cas3,DinG,csa3,RT,DEDDh,cas4,WYL,cas2,cas1,csb3,csb2gr5,cas7	NA|89aa|up_4|NZ_AP022575.1_311543_311810_+,NA|138aa|down_1|NZ_AP022575.1_322300_322714_+,NA|385aa|down_2|NZ_AP022575.1_325562_326717_+	NA|236aa|up_9|NZ_AP022575.1_307444_308152_+	pfam06271, RDD, RDD family	NA|395aa|up_8|NZ_AP022575.1_308193_309378_+	PRK07811, PRK07811, cystathionine gamma-synthase; Provisional	NA|165aa|up_7|NZ_AP022575.1_309430_309925_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|145aa|up_6|NZ_AP022575.1_310152_310587_-	pfam14155, DUF4307, Domain of unknown function (DUF4307)	NA|291aa|up_5|NZ_AP022575.1_310674_311547_+	TIGR03446, mycothiol_Mca, mycothiol conjugate amidase Mca	NA|89aa|up_4|NZ_AP022575.1_311543_311810_+	NA	NA|680aa|up_3|NZ_AP022575.1_311796_313836_+	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|247aa|up_2|NZ_AP022575.1_313894_314635_-	TIGR01065, Hypothetical_UPF0073_protein_yqfA	NA|263aa|up_1|NZ_AP022575.1_314782_315571_+	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional	NA|152aa|up_0|NZ_AP022575.1_317113_317569_+	pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12	NA|364aa|down_0|NZ_AP022575.1_321094_322186_+	pfam00891, Methyltransf_2, O-methyltransferase	NA|138aa|down_1|NZ_AP022575.1_322300_322714_+	NA	NA|385aa|down_2|NZ_AP022575.1_325562_326717_+	NA	NA|313aa|down_3|NZ_AP022575.1_326756_327695_-	PRK05439, PRK05439, pantothenate kinase; Provisional	NA|427aa|down_4|NZ_AP022575.1_327833_329114_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|276aa|down_5|NZ_AP022575.1_329247_330075_+	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|434aa|down_6|NZ_AP022575.1_330282_331584_+	COG1875, COG1875, NYN ribonuclease and ATPase of PhoH family domains [General    function prediction only]	NA|292aa|down_7|NZ_AP022575.1_331610_332486_+	cd10917, CE4_NodB_like_6s_7s, Catalytic NodB homology domain of rhizobial NodB-like proteins	NA|318aa|down_8|NZ_AP022575.1_332549_333503_-	pfam12868, DUF3824, Domain of unknwon function (DUF3824)	NA|474aa|down_9|NZ_AP022575.1_333741_335163_-	PRK00485, fumC, fumarate hydratase; Reviewed
GCF_010730055.1_ASM1073005v1	NZ_AP022575	Mycobacterium shinjukuense strain JCM 14233	4	318879-319379	2	CRISPRCasFinder	no		cas3,DinG,csa3,RT,DEDDh,cas4,WYL,cas2,cas1,csb3,csb2gr5,cas7	Orphan	GGCGGCGCCGGCGGCAAGGGCGGC	24	5	43	319038-319058|319038-319058|319038-319058|319038-319058|319038-319058|319038-319058|319038-319058|319038-319058|319038-319058|319038-319058|319038-319058|319038-319058|319038-319058|319038-319058|319038-319058|319038-319058|319038-319058|319038-319058|319038-319058|319038-319058|319038-319058|319038-319058|319038-319058|319038-319058|319038-319058|319038-319058|319038-319058|319038-319058|319038-319058|319038-319058|319038-319058|319038-319058|319038-319058|319038-319058|319038-319058|319038-319058|319038-319058|319038-319058|319083-319103|319202-319222|319247-319261|319247-319261|319338-319355	NZ_AP022575.1_598397-598377|NZ_AP022575.1_916473-916453|NZ_AP022575.1_559275-559255|NZ_AP022575.1_559323-559303|NZ_AP022575.1_559902-559882|NZ_AP022575.1_3049962-3049942|NZ_AP022575.1_4294819-4294799|NZ_AP022575.1_4295455-4295435|NZ_AP022575.1_15018-15038|NZ_AP022575.1_15327-15347|NZ_AP022575.1_1522137-1522157|NZ_AP022575.1_1522209-1522229|NZ_AP022575.1_1963653-1963673|NZ_AP022575.1_2056624-2056644|NZ_AP022575.1_2100940-2100960|NZ_AP022575.1_2178303-2178323|NZ_AP022575.1_2404800-2404820|NZ_AP022575.1_2405394-2405414|NZ_AP022575.1_2799491-2799511|NZ_AP022575.1_2801487-2801507|NZ_AP022575.1_2885384-2885404|NZ_AP022575.1_2885837-2885857|NZ_AP022575.1_3143679-3143699|NZ_AP022575.1_4501373-4501393|NZ_AP022575.1_3677-3657|NZ_AP022575.1_63333-63313|NZ_AP022575.1_916377-916357|NZ_AP022575.1_916545-916525|NZ_AP022575.1_1584862-1584842|NZ_AP022575.1_2189204-2189184|NZ_AP022575.1_2222903-2222883|NZ_AP022575.1_2588080-2588060|NZ_AP022575.1_2851562-2851542|NZ_AP022575.1_2856109-2856089|NZ_AP022575.1_3049587-3049567|NZ_AP022575.1_4296643-4296623|NZ_AP022575.1_4490886-4490866|NZ_AP022575.1_4492756-4492736|NZ_AP022575.1_325671-325691|NZ_AP022575.1_2288873-2288853|NZ_AP022575.1_403705-403719|NZ_AP022575.1_404140-404154|NZ_AP022575.1_2589019-2589002	NA	9	9	Orphan	cas3,DinG,csa3,RT,DEDDh,cas4,WYL,cas2,cas1,csb3,csb2gr5,cas7	NA|89aa|up_4|NZ_AP022575.1_311543_311810_+,NA|138aa|down_1|NZ_AP022575.1_322300_322714_+,NA|385aa|down_2|NZ_AP022575.1_325562_326717_+	NA|236aa|up_9|NZ_AP022575.1_307444_308152_+	pfam06271, RDD, RDD family	NA|395aa|up_8|NZ_AP022575.1_308193_309378_+	PRK07811, PRK07811, cystathionine gamma-synthase; Provisional	NA|165aa|up_7|NZ_AP022575.1_309430_309925_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|145aa|up_6|NZ_AP022575.1_310152_310587_-	pfam14155, DUF4307, Domain of unknown function (DUF4307)	NA|291aa|up_5|NZ_AP022575.1_310674_311547_+	TIGR03446, mycothiol_Mca, mycothiol conjugate amidase Mca	NA|89aa|up_4|NZ_AP022575.1_311543_311810_+	NA	NA|680aa|up_3|NZ_AP022575.1_311796_313836_+	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|247aa|up_2|NZ_AP022575.1_313894_314635_-	TIGR01065, Hypothetical_UPF0073_protein_yqfA	NA|263aa|up_1|NZ_AP022575.1_314782_315571_+	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional	NA|152aa|up_0|NZ_AP022575.1_317113_317569_+	pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12	NA|364aa|down_0|NZ_AP022575.1_321094_322186_+	pfam00891, Methyltransf_2, O-methyltransferase	NA|138aa|down_1|NZ_AP022575.1_322300_322714_+	NA	NA|385aa|down_2|NZ_AP022575.1_325562_326717_+	NA	NA|313aa|down_3|NZ_AP022575.1_326756_327695_-	PRK05439, PRK05439, pantothenate kinase; Provisional	NA|427aa|down_4|NZ_AP022575.1_327833_329114_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|276aa|down_5|NZ_AP022575.1_329247_330075_+	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|434aa|down_6|NZ_AP022575.1_330282_331584_+	COG1875, COG1875, NYN ribonuclease and ATPase of PhoH family domains [General    function prediction only]	NA|292aa|down_7|NZ_AP022575.1_331610_332486_+	cd10917, CE4_NodB_like_6s_7s, Catalytic NodB homology domain of rhizobial NodB-like proteins	NA|318aa|down_8|NZ_AP022575.1_332549_333503_-	pfam12868, DUF3824, Domain of unknwon function (DUF3824)	NA|474aa|down_9|NZ_AP022575.1_333741_335163_-	PRK00485, fumC, fumarate hydratase; Reviewed
GCF_010730055.1_ASM1073005v1	NZ_AP022575	Mycobacterium shinjukuense strain JCM 14233	5	413329-413548	2	CRT	no		cas3,DinG,csa3,RT,DEDDh,cas4,WYL,cas2,cas1,csb3,csb2gr5,cas7	Orphan	GCGGCGGTACCAGCGGCGG	19	3	5	413348-413370|413348-413370|413447-413472|413447-413472|413492-413529	NZ_AP022575.1_411812-411834|NZ_AP022575.1_411869-411891|NZ_AP022575.1_411839-411864|NZ_AP022575.1_411881-411906|NZ_AP022575.1_411884-411921	NA	4	4	Orphan	cas3,DinG,csa3,RT,DEDDh,cas4,WYL,cas2,cas1,csb3,csb2gr5,cas7	NA|51aa|up_4|NZ_AP022575.1_405463_405616_+,NA|163aa|up_3|NZ_AP022575.1_405567_406056_+,NA	NA|132aa|up_9|NZ_AP022575.1_397327_397723_+	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)	NA|625aa|up_8|NZ_AP022575.1_399265_401140_+	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]	NA|635aa|up_7|NZ_AP022575.1_401144_403049_+	cd08501, PBP2_Lpqw, The substrate-binding domain of mycobacterial lipoprotein Lpqw contains type 2 periplasmic binding fold	NA|385aa|up_6|NZ_AP022575.1_403185_404340_+	pfam00934, PE, PE family	NA|298aa|up_5|NZ_AP022575.1_404555_405449_+	TIGR03445, mycothiol_MshB, N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase	NA|51aa|up_4|NZ_AP022575.1_405463_405616_+	NA	NA|163aa|up_3|NZ_AP022575.1_405567_406056_+	NA	NA|293aa|up_2|NZ_AP022575.1_406021_406900_-	pfam00934, PE, PE family	NA|851aa|up_1|NZ_AP022575.1_407025_409578_+	PRK09234, fbiC, FO synthase; Reviewed	NA|483aa|up_0|NZ_AP022575.1_409864_411313_+	cd06543, GH18_PF-ChiA-like, PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain	NA|111aa|down_0|NZ_AP022575.1_415033_415366_-	TIGR04529, hypothetical_protein, hemophore-related protein, Rv0203/Rv1174c family	NA|677aa|down_1|NZ_AP022575.1_415573_417604_-	cd02930, DCR_FMN, 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain	NA|190aa|down_2|NZ_AP022575.1_417600_418170_-	pfam10400, Vir_act_alpha_C, Virulence activator alpha C-term	NA|109aa|down_3|NZ_AP022575.1_418371_418698_+	COG1146, COG1146, Ferredoxin [Energy production and conversion]	NA|367aa|down_4|NZ_AP022575.1_418730_419831_+	PRK07865, PRK07865, N-succinyldiaminopimelate aminotransferase; Reviewed	NA|938aa|down_5|NZ_AP022575.1_419907_422721_-	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|83aa|down_6|NZ_AP022575.1_422832_423081_+	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|127aa|down_7|NZ_AP022575.1_423077_423458_+	cd18732, PIN_MtVapC4-C5_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|268aa|down_8|NZ_AP022575.1_423801_424605_-	pfam09037, Sulphotransf, Stf0 sulphotransferase	NA|132aa|down_9|NZ_AP022575.1_424679_425075_-	cd18732, PIN_MtVapC4-C5_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins
GCF_010730055.1_ASM1073005v1	NZ_AP022575	Mycobacterium shinjukuense strain JCM 14233	6	1035122-1035803	3	CRISPRCasFinder	no	RT	cas3,DinG,csa3,RT,DEDDh,cas4,WYL,cas2,cas1,csb3,csb2gr5,cas7	Unclear	TGCCGGTGTTGCCGAAGCCGATGTT	25	3	15	1035267-1035286|1035267-1035286|1035267-1035286|1035267-1035286|1035267-1035286|1035267-1035286|1035267-1035286|1035357-1035379|1035714-1035733|1035714-1035733|1035714-1035733|1035714-1035733|1035714-1035733|1035714-1035733|1035714-1035733	NZ_AP022575.1_4484050-4484031|NZ_AP022575.1_2021-2002|NZ_AP022575.1_1829636-1829617|NZ_AP022575.1_4488259-4488240|NZ_AP022575.1_66737-66756|NZ_AP022575.1_378953-378972|NZ_AP022575.1_2612749-2612768|NZ_AP022575.1_3409744-3409722|NZ_AP022575.1_67121-67140|NZ_AP022575.1_3354151-3354170|NZ_AP022575.1_1829306-1829287|NZ_AP022575.1_1832490-1832471|NZ_AP022575.1_3406633-3406614|NZ_AP022575.1_3409405-3409386|NZ_AP022575.1_4484932-4484913	NA	12	12	Orphan	cas3,DinG,csa3,RT,DEDDh,cas4,WYL,cas2,cas1,csb3,csb2gr5,cas7	NA|164aa|up_4|NZ_AP022575.1_1026290_1026782_-,NA|70aa|up_3|NZ_AP022575.1_1027565_1027775_-,NA|59aa|down_8|NZ_AP022575.1_1047023_1047200_-	NA|485aa|up_9|NZ_AP022575.1_1020536_1021991_+	TIGR00909, putative_amino_acid_transporter, amino acid transporter	NA|293aa|up_8|NZ_AP022575.1_1021987_1022866_+	pfam00582, Usp, Universal stress protein family	NA|199aa|up_7|NZ_AP022575.1_1022940_1023537_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_6|NZ_AP022575.1_1023533_1024538_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|456aa|up_5|NZ_AP022575.1_1024977_1026345_+	pfam02720, DUF222, Domain of unknown function (DUF222)	NA|164aa|up_4|NZ_AP022575.1_1026290_1026782_-	NA	NA|70aa|up_3|NZ_AP022575.1_1027565_1027775_-	NA	NA|767aa|up_2|NZ_AP022575.1_1028010_1030311_+	PLN02892, PLN02892, isocitrate lyase	NA|144aa|up_1|NZ_AP022575.1_1030334_1030766_-	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|70aa|up_0|NZ_AP022575.1_1030753_1030963_-	pfam09957, VapB_antitoxin, Bacterial antitoxin of type II TA system, VapB	NA|156aa|down_0|NZ_AP022575.1_1036928_1037396_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|299aa|down_1|NZ_AP022575.1_1037450_1038347_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|428aa|down_2|NZ_AP022575.1_1038883_1040167_+	pfam00144, Beta-lactamase, Beta-lactamase	RT|458aa|down_3|NZ_AP022575.1_1040803_1042177_+	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|626aa|down_4|NZ_AP022575.1_1042904_1044782_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_5|NZ_AP022575.1_1044939_1045419_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_6|NZ_AP022575.1_1045572_1046346_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|166aa|down_7|NZ_AP022575.1_1046488_1046986_+	PRK00522, tpx, thiol peroxidase	NA|59aa|down_8|NZ_AP022575.1_1047023_1047200_-	NA	NA|364aa|down_9|NZ_AP022575.1_1047582_1048674_-	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]
GCF_010730055.1_ASM1073005v1	NZ_AP022575	Mycobacterium shinjukuense strain JCM 14233	7	1338328-1338429	4	CRISPRCasFinder	no	WYL	cas3,DinG,csa3,RT,DEDDh,cas4,WYL,cas2,cas1,csb3,csb2gr5,cas7	Unclear	TGGTGCAGGCGGAGGCCTCCGATC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csa3,RT,DEDDh,cas4,WYL,cas2,cas1,csb3,csb2gr5,cas7	NA|163aa|up_5|NZ_AP022575.1_1331288_1331777_+,NA|186aa|up_4|NZ_AP022575.1_1332107_1332665_-,NA|332aa|up_1|NZ_AP022575.1_1334958_1335954_-,NA|180aa|down_0|NZ_AP022575.1_1339051_1339591_-,NA|52aa|down_4|NZ_AP022575.1_1342970_1343126_-	NA|904aa|up_9|NZ_AP022575.1_1325223_1327935_+	COG4581, COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair]	NA|256aa|up_8|NZ_AP022575.1_1327986_1328754_+	pfam14230, DUF4333, Domain of unknown function (DUF4333)	NA|392aa|up_7|NZ_AP022575.1_1328757_1329933_-	smart00475, 53EXOc, 5'-3' exonuclease	NA|375aa|up_6|NZ_AP022575.1_1329989_1331114_+	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|163aa|up_5|NZ_AP022575.1_1331288_1331777_+	NA	NA|186aa|up_4|NZ_AP022575.1_1332107_1332665_-	NA	NA|656aa|up_3|NZ_AP022575.1_1332645_1334613_-	pfam06259, Abhydrolase_8, Alpha/beta hydrolase	NA|105aa|up_2|NZ_AP022575.1_1334594_1334909_-	pfam10817, DUF2563, Protein of unknown function (DUF2563)	NA|332aa|up_1|NZ_AP022575.1_1334958_1335954_-	NA	NA|321aa|up_0|NZ_AP022575.1_1335946_1336909_-	PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional	NA|180aa|down_0|NZ_AP022575.1_1339051_1339591_-	NA	NA|90aa|down_1|NZ_AP022575.1_1339638_1339908_-	pfam18645, DUF5631, Family of unknown function (DUF5631)	NA|114aa|down_2|NZ_AP022575.1_1340283_1340625_+	pfam14021, TNT, Tuberculosis necrotizing toxin	NA|493aa|down_3|NZ_AP022575.1_1341467_1342946_+	cd08590, PI-PLCc_Rv2075c_like, Catalytic domain of uncharacterized Mycobacterium tuberculosis Rv2075c-like proteins	NA|52aa|down_4|NZ_AP022575.1_1342970_1343126_-	NA	NA|452aa|down_5|NZ_AP022575.1_1343253_1344609_+	PRK09649, PRK09649, RNA polymerase sigma factor SigC; Reviewed	NA|250aa|down_6|NZ_AP022575.1_1344693_1345443_-	PRK05599, PRK05599, SDR family oxidoreductase	NA|140aa|down_7|NZ_AP022575.1_1345472_1345892_+	TIGR03618, Rv1155_F420, PPOX class probable F420-dependent enzyme	NA|283aa|down_8|NZ_AP022575.1_1345938_1346787_+	COG2367, PenP, Beta-lactamase class A [Defense mechanisms]	NA|426aa|down_9|NZ_AP022575.1_1346859_1348137_+	pfam08242, Methyltransf_12, Methyltransferase domain
GCF_010730055.1_ASM1073005v1	NZ_AP022575	Mycobacterium shinjukuense strain JCM 14233	8	2108477-2109076	2,5,3	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,csb3,cas3,csb2gr5,cas7	cas3,DinG,csa3,RT,DEDDh,cas4,WYL,cas2,cas1,csb3,csb2gr5,cas7	Unclear	GCCTCGATGAAGTGCGGCCGCCGAAACGGCCGCCGC,GCCTCGATGAAGTGCGGCCGCCGAAACGGCCGCCGC,GCCTCGATGAAGTGCGGCCGCCGAAAC	36,36,27	0	0	NA	NA	NA:NA:NA	7,7,8	8	Unclear	cas3,DinG,csa3,RT,DEDDh,cas4,WYL,cas2,cas1,csb3,csb2gr5,cas7	NA|46aa|up_9|NZ_AP022575.1_2104307_2104445_+,NA|126aa|up_2|NZ_AP022575.1_2107231_2107609_-,NA|209aa|down_1|NZ_AP022575.1_2111455_2112082_-	NA|46aa|up_9|NZ_AP022575.1_2104307_2104445_+	NA	NA|220aa|up_8|NZ_AP022575.1_2104441_2105101_+	pfam16708, LppA, Lipoprotein confined to pathogenic Mycobacterium	NA|221aa|up_7|NZ_AP022575.1_2105097_2105760_+	pfam16708, LppA, Lipoprotein confined to pathogenic Mycobacterium	NA|71aa|up_6|NZ_AP022575.1_2105920_2106133_+	COG5450, COG5450, Transcription regulator of the Arc/MetJ class [Transcription]	NA|138aa|up_5|NZ_AP022575.1_2106132_2106546_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|86aa|up_4|NZ_AP022575.1_2106584_2106842_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|126aa|up_3|NZ_AP022575.1_2106838_2107216_+	cd18741, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|126aa|up_2|NZ_AP022575.1_2107231_2107609_-	NA	NA|131aa|up_1|NZ_AP022575.1_2107628_2108021_-	cd18680, PIN_MtVapC20-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC20 and related proteins	NA|74aa|up_0|NZ_AP022575.1_2108017_2108239_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|271aa|down_0|NZ_AP022575.1_2109184_2109997_-	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|209aa|down_1|NZ_AP022575.1_2111455_2112082_-	NA	cas2|101aa|down_2|NZ_AP022575.1_2117638_2117941_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|532aa|down_3|NZ_AP022575.1_2117937_2119533_-	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	csb3|342aa|down_4|NZ_AP022575.1_2119529_2120555_-	cd09764, Csb3_I-U, CRISPR/Cas system-associated RAMP superfamily protein Csb3	cas3|940aa|down_5|NZ_AP022575.1_2120551_2123371_-	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc	csb2gr5|520aa|down_6|NZ_AP022575.1_2123370_2124930_-	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system	cas7|402aa|down_7|NZ_AP022575.1_2124934_2126140_-	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053)	NA|149aa|down_8|NZ_AP022575.1_2126746_2127193_-	COG1989, PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|276aa|down_9|NZ_AP022575.1_2127204_2128032_-	TIGR01809, Shik-DH-AROM, shikimate-5-dehydrogenase, fungal AROM-type
GCF_010730055.1_ASM1073005v1	NZ_AP022575	Mycobacterium shinjukuense strain JCM 14233	9	2112276-2117449	6,4,3	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csb3,cas3,csb2gr5,cas7	cas3,DinG,csa3,RT,DEDDh,cas4,WYL,cas2,cas1,csb3,csb2gr5,cas7	Unclear	GCCTCGATGAAGTGCGGCCGCCGAAACGGCCGCCGC,GCCTCGATGAAGTGCGGCCGCCGAAACGGCCGCCGC,GCCTCGATGAAGTGCGGCCGCCGAAACGGCCGCCGC	36,36,36	0	0	NA	NA	NA:NA:NA	71,71,70	71	Unclear	cas3,DinG,csa3,RT,DEDDh,cas4,WYL,cas2,cas1,csb3,csb2gr5,cas7	NA|126aa|up_4|NZ_AP022575.1_2107231_2107609_-,NA|209aa|up_0|NZ_AP022575.1_2111455_2112082_-,NA	NA|221aa|up_9|NZ_AP022575.1_2105097_2105760_+	pfam16708, LppA, Lipoprotein confined to pathogenic Mycobacterium	NA|71aa|up_8|NZ_AP022575.1_2105920_2106133_+	COG5450, COG5450, Transcription regulator of the Arc/MetJ class [Transcription]	NA|138aa|up_7|NZ_AP022575.1_2106132_2106546_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|86aa|up_6|NZ_AP022575.1_2106584_2106842_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|126aa|up_5|NZ_AP022575.1_2106838_2107216_+	cd18741, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|126aa|up_4|NZ_AP022575.1_2107231_2107609_-	NA	NA|131aa|up_3|NZ_AP022575.1_2107628_2108021_-	cd18680, PIN_MtVapC20-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC20 and related proteins	NA|74aa|up_2|NZ_AP022575.1_2108017_2108239_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|271aa|up_1|NZ_AP022575.1_2109184_2109997_-	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|209aa|up_0|NZ_AP022575.1_2111455_2112082_-	NA	cas2|101aa|down_0|NZ_AP022575.1_2117638_2117941_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|532aa|down_1|NZ_AP022575.1_2117937_2119533_-	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	csb3|342aa|down_2|NZ_AP022575.1_2119529_2120555_-	cd09764, Csb3_I-U, CRISPR/Cas system-associated RAMP superfamily protein Csb3	cas3|940aa|down_3|NZ_AP022575.1_2120551_2123371_-	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc	csb2gr5|520aa|down_4|NZ_AP022575.1_2123370_2124930_-	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system	cas7|402aa|down_5|NZ_AP022575.1_2124934_2126140_-	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053)	NA|149aa|down_6|NZ_AP022575.1_2126746_2127193_-	COG1989, PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|276aa|down_7|NZ_AP022575.1_2127204_2128032_-	TIGR01809, Shik-DH-AROM, shikimate-5-dehydrogenase, fungal AROM-type	NA|414aa|down_8|NZ_AP022575.1_2128009_2129251_-	COG1559, COG1559, Aminodeoxychorismate lyase [Coenzyme transport and metabolism]	NA|173aa|down_9|NZ_AP022575.1_2129243_2129762_-	PRK00109, PRK00109, Holliday junction resolvase RuvX
GCF_010730055.1_ASM1073005v1	NZ_AP022575	Mycobacterium shinjukuense strain JCM 14233	10	2852651-2853992	5	CRT	no		cas3,DinG,csa3,RT,DEDDh,cas4,WYL,cas2,cas1,csb3,csb2gr5,cas7	Orphan	GCCGCCGTNNCCGCCGNNGCCGCCG	25	0	0	NA	NA	NA	19	19	Orphan	cas3,DinG,csa3,RT,DEDDh,cas4,WYL,cas2,cas1,csb3,csb2gr5,cas7	NA,NA	NA|282aa|up_9|NZ_AP022575.1_2819596_2820442_-	PRK14193, PRK14193, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	NA|407aa|up_8|NZ_AP022575.1_2820481_2821702_+	cd02803, OYE_like_FMN_family, Old yellow enzyme (OYE)-like FMN binding domain	NA|481aa|up_7|NZ_AP022575.1_2821847_2823290_+	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|283aa|up_6|NZ_AP022575.1_2823245_2824094_-	PRK15092, PRK15092, DNA-binding transcriptional repressor LrhA; Provisional	NA|354aa|up_5|NZ_AP022575.1_2824297_2825359_+	cd14958, NHL_PAL_like, Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL, EC 4	NA|341aa|up_4|NZ_AP022575.1_2825484_2826507_+	pfam02615, Ldh_2, Malate/L-lactate dehydrogenase	NA|429aa|up_3|NZ_AP022575.1_2826490_2827777_+	cd08191, Fe-ADH-like, Iron-containing alcohol dehydrogenases-like	NA|497aa|up_2|NZ_AP022575.1_2827773_2829264_+	cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like	NA|3729aa|up_1|NZ_AP022575.1_2829297_2840484_-	pfam00823, PPE, PPE family	NA|3217aa|up_0|NZ_AP022575.1_2840624_2850275_-	pfam00823, PPE, PPE family	NA|3722aa|down_0|NZ_AP022575.1_2857290_2868456_-	pfam00823, PPE, PPE family	NA|847aa|down_1|NZ_AP022575.1_2868830_2871371_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|113aa|down_2|NZ_AP022575.1_2871393_2871732_+	pfam16697, Yop-YscD_cpl, Inner membrane component of T3SS, cytoplasmic domain	NA|196aa|down_3|NZ_AP022575.1_2871821_2872409_-	COG2229, COG2229, Predicted GTPase [General function prediction only]	NA|124aa|down_4|NZ_AP022575.1_2872389_2872761_-	pfam05331, DUF742, Protein of unknown function (DUF742)	NA|131aa|down_5|NZ_AP022575.1_2872738_2873131_-	COG2018, COG2018, Uncharacterized distant relative of homeotic protein bithoraxoid [General function prediction only]	NA|879aa|down_6|NZ_AP022575.1_2873127_2875764_-	cd00075, HATPase, Histidine kinase-like ATPase domain	NA|155aa|down_7|NZ_AP022575.1_2875947_2876412_+	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]	NA|215aa|down_8|NZ_AP022575.1_2876412_2877057_-	cd02062, Nitro_FMN_reductase, nitroreductase family protein	NA|145aa|down_9|NZ_AP022575.1_2877055_2877490_+	TIGR03667, Rv3369, PPOX class probable F420-dependent enzyme, Rv3369 family
GCF_010730055.1_ASM1073005v1	NZ_AP022575	Mycobacterium shinjukuense strain JCM 14233	11	3048993-3049099	7	CRISPRCasFinder	no		cas3,DinG,csa3,RT,DEDDh,cas4,WYL,cas2,cas1,csb3,csb2gr5,cas7	Orphan	ACATCACCCGGCTGGACCCGCCCCCGGGTCCGCACACC	38	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csa3,RT,DEDDh,cas4,WYL,cas2,cas1,csb3,csb2gr5,cas7	NA|204aa|up_1|NZ_AP022575.1_3043695_3044307_-,NA|96aa|down_2|NZ_AP022575.1_3057910_3058198_-,NA|144aa|down_8|NZ_AP022575.1_3066716_3067148_-	NA|1317aa|up_9|NZ_AP022575.1_3030036_3033987_-	PRK00566, PRK00566, DNA-directed RNA polymerase subunit beta'; Provisional	NA|1173aa|up_8|NZ_AP022575.1_3034027_3037546_-	PRK00405, rpoB, DNA-directed RNA polymerase subunit beta; Reviewed	NA|337aa|up_7|NZ_AP022575.1_3038033_3039044_-	COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|502aa|up_6|NZ_AP022575.1_3039192_3040698_-	COG3670, COG3670, Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	NA|239aa|up_5|NZ_AP022575.1_3040769_3041486_+	pfam13305, WHG, WHG domain	NA|131aa|up_4|NZ_AP022575.1_3041478_3041871_-	PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed	NA|190aa|up_3|NZ_AP022575.1_3041902_3042472_-	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed	NA|307aa|up_2|NZ_AP022575.1_3042769_3043690_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|204aa|up_1|NZ_AP022575.1_3043695_3044307_-	NA	NA|1297aa|up_0|NZ_AP022575.1_3044303_3048194_-	COG0383, AMS1, Alpha-mannosidase [Carbohydrate transport and metabolism]	NA|1572aa|down_0|NZ_AP022575.1_3049422_3054138_-	pfam00934, PE, PE family	NA|1015aa|down_1|NZ_AP022575.1_3054483_3057528_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|96aa|down_2|NZ_AP022575.1_3057910_3058198_-	NA	NA|751aa|down_3|NZ_AP022575.1_3058352_3060605_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|449aa|down_4|NZ_AP022575.1_3061120_3062467_+	COG0661, AarF, Predicted unusual protein kinase [General function prediction only]	NA|302aa|down_5|NZ_AP022575.1_3062466_3063372_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|287aa|down_6|NZ_AP022575.1_3063425_3064286_+	pfam02353, CMAS, Mycolic acid cyclopropane synthetase	NA|288aa|down_7|NZ_AP022575.1_3064294_3065158_+	pfam02353, CMAS, Mycolic acid cyclopropane synthetase	NA|144aa|down_8|NZ_AP022575.1_3066716_3067148_-	NA	NA|204aa|down_9|NZ_AP022575.1_3067056_3067668_+	pfam02353, CMAS, Mycolic acid cyclopropane synthetase
GCF_010730055.1_ASM1073005v1	NZ_AP022575	Mycobacterium shinjukuense strain JCM 14233	12	3071316-3071420	8	CRISPRCasFinder	no		cas3,DinG,csa3,RT,DEDDh,cas4,WYL,cas2,cas1,csb3,csb2gr5,cas7	Orphan	CAGGCCGTGCCGGCCTGCATCGTC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csa3,RT,DEDDh,cas4,WYL,cas2,cas1,csb3,csb2gr5,cas7	NA|144aa|up_6|NZ_AP022575.1_3066716_3067148_-,NA|262aa|down_6|NZ_AP022575.1_3074764_3075550_+	NA|302aa|up_9|NZ_AP022575.1_3062466_3063372_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|287aa|up_8|NZ_AP022575.1_3063425_3064286_+	pfam02353, CMAS, Mycolic acid cyclopropane synthetase	NA|288aa|up_7|NZ_AP022575.1_3064294_3065158_+	pfam02353, CMAS, Mycolic acid cyclopropane synthetase	NA|144aa|up_6|NZ_AP022575.1_3066716_3067148_-	NA	NA|204aa|up_5|NZ_AP022575.1_3067056_3067668_+	pfam02353, CMAS, Mycolic acid cyclopropane synthetase	NA|299aa|up_4|NZ_AP022575.1_3067739_3068636_+	pfam02353, CMAS, Mycolic acid cyclopropane synthetase	NA|237aa|up_3|NZ_AP022575.1_3068705_3069416_-	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|144aa|up_2|NZ_AP022575.1_3069480_3069912_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|239aa|up_1|NZ_AP022575.1_3069969_3070686_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|165aa|up_0|NZ_AP022575.1_3070717_3071212_-	PRK07597, secE, preprotein translocase subunit SecE; Reviewed	NA|167aa|down_0|NZ_AP022575.1_3071660_3072161_-	PRK13691, PRK13691, (3R)-hydroxyacyl-ACP dehydratase subunit HadC; Provisional	NA|143aa|down_1|NZ_AP022575.1_3072176_3072605_-	PRK13693, PRK13693, (3R)-hydroxyacyl-ACP dehydratase subunit HadB; Provisional	NA|160aa|down_2|NZ_AP022575.1_3072591_3073071_-	PRK13692, PRK13692, (3R)-hydroxyacyl-ACP dehydratase subunit HadA; Provisional	NA|56aa|down_3|NZ_AP022575.1_3073120_3073288_-	PRK00504, rpmG, 50S ribosomal protein L33; Validated	NA|72aa|down_4|NZ_AP022575.1_3073621_3073837_-	COG5450, COG5450, Transcription regulator of the Arc/MetJ class [Transcription]	NA|269aa|down_5|NZ_AP022575.1_3073878_3074685_+	cd16275, BaeB-like_MBL-fold, Bacillus amyloliquefaciens BaeB and related proteins; MBL-fold metallo hydrolase domain	NA|262aa|down_6|NZ_AP022575.1_3074764_3075550_+	NA	NA|232aa|down_7|NZ_AP022575.1_3075682_3076378_+	PRK06213, PRK06213, crotonase/enoyl-CoA hydratase family protein	NA|1099aa|down_8|NZ_AP022575.1_3076497_3079794_+	TIGR01450, recC, exodeoxyribonuclease V, gamma subunit	NA|1093aa|down_9|NZ_AP022575.1_3079793_3083072_+	TIGR00609, RecBCD_enzyme_subunit_RecB, exodeoxyribonuclease V, beta subunit
GCF_010730055.1_ASM1073005v1	NZ_AP022575	Mycobacterium shinjukuense strain JCM 14233	13	3421501-3421589	9	CRISPRCasFinder	no		cas3,DinG,csa3,RT,DEDDh,cas4,WYL,cas2,cas1,csb3,csb2gr5,cas7	Orphan	GCCGCGTCCCCGCGCATGCGGCCAGTTG	28	1	1	3421529-3421561	NZ_AP022575.1_1662820-1662788	NA	1	1	Orphan	cas3,DinG,csa3,RT,DEDDh,cas4,WYL,cas2,cas1,csb3,csb2gr5,cas7	NA|277aa|up_9|NZ_AP022575.1_3398336_3399167_-,NA|218aa|up_1|NZ_AP022575.1_3419085_3419739_-,NA|60aa|down_2|NZ_AP022575.1_3424131_3424311_+	NA|277aa|up_9|NZ_AP022575.1_3398336_3399167_-	NA	NA|849aa|up_8|NZ_AP022575.1_3399272_3401819_-	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB	NA|388aa|up_7|NZ_AP022575.1_3401980_3403144_+	cd06187, O2ase_reductase_like, The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant	NA|3515aa|up_6|NZ_AP022575.1_3403471_3414016_+	pfam00823, PPE, PPE family	NA|130aa|up_5|NZ_AP022575.1_3414041_3414431_-	cd01279, HTH_HspR-like, Helix-Turn-Helix DNA binding domain of HspR-like transcription regulators	NA|390aa|up_4|NZ_AP022575.1_3414431_3415601_-	PRK14279, PRK14279, molecular chaperone DnaJ	NA|233aa|up_3|NZ_AP022575.1_3415656_3416355_-	PRK14142, PRK14142, heat shock protein GrpE; Provisional	NA|622aa|up_2|NZ_AP022575.1_3416351_3418217_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|218aa|up_1|NZ_AP022575.1_3419085_3419739_-	NA	NA|268aa|up_0|NZ_AP022575.1_3419741_3420545_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|474aa|down_0|NZ_AP022575.1_3421748_3423170_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|188aa|down_1|NZ_AP022575.1_3423464_3424028_+	PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional	NA|60aa|down_2|NZ_AP022575.1_3424131_3424311_+	NA	NA|596aa|down_3|NZ_AP022575.1_3424409_3426197_+	cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family	NA|496aa|down_4|NZ_AP022575.1_3426209_3427697_-	COG0699, COG0699, Predicted GTPases (dynamin-related) [General function prediction only]	NA|614aa|down_5|NZ_AP022575.1_3427693_3429535_-	COG0699, COG0699, Predicted GTPases (dynamin-related) [General function prediction only]	NA|456aa|down_6|NZ_AP022575.1_3429791_3431159_-	pfam02720, DUF222, Domain of unknown function (DUF222)	NA|713aa|down_7|NZ_AP022575.1_3431405_3433544_-	pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal	NA|181aa|down_8|NZ_AP022575.1_3433748_3434291_-	PRK12323, PRK12323, DNA polymerase III subunit gamma/tau	NA|827aa|down_9|NZ_AP022575.1_3434480_3436961_+	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon
GCF_010730055.1_ASM1073005v1	NZ_AP022575	Mycobacterium shinjukuense strain JCM 14233	14	3444169-3444255	10	CRISPRCasFinder	no	csa3	cas3,DinG,csa3,RT,DEDDh,cas4,WYL,cas2,cas1,csb3,csb2gr5,cas7	Type I-A	ACCGCGGCGATCACCAGCAGCACC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csa3,RT,DEDDh,cas4,WYL,cas2,cas1,csb3,csb2gr5,cas7	NA,NA|111aa|down_4|NZ_AP022575.1_3451766_3452099_+	NA|614aa|up_9|NZ_AP022575.1_3427693_3429535_-	COG0699, COG0699, Predicted GTPases (dynamin-related) [General function prediction only]	NA|456aa|up_8|NZ_AP022575.1_3429791_3431159_-	pfam02720, DUF222, Domain of unknown function (DUF222)	NA|713aa|up_7|NZ_AP022575.1_3431405_3433544_-	pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal	NA|181aa|up_6|NZ_AP022575.1_3433748_3434291_-	PRK12323, PRK12323, DNA polymerase III subunit gamma/tau	NA|827aa|up_5|NZ_AP022575.1_3434480_3436961_+	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|900aa|up_4|NZ_AP022575.1_3437072_3439772_+	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion]	NA|431aa|up_3|NZ_AP022575.1_3439802_3441095_+	PRK09265, PRK09265, aminotransferase AlaT; Validated	NA|288aa|up_2|NZ_AP022575.1_3441259_3442123_-	TIGR01207, Glucose-1-phosphate_thymidylyltransferase_1, glucose-1-phosphate thymidylyltransferase, short form	NA|125aa|up_1|NZ_AP022575.1_3442140_3442515_-	pfam12680, SnoaL_2, SnoaL-like domain	NA|252aa|up_0|NZ_AP022575.1_3442541_3443297_-	TIGR03083, TIGR03083, uncharacterized Actinobacterial protein TIGR03083	NA|248aa|down_0|NZ_AP022575.1_3444893_3445637_-	pfam02665, Nitrate_red_gam, Nitrate reductase gamma subunit	NA|225aa|down_1|NZ_AP022575.1_3445633_3446308_-	COG2180, NarJ, Nitrate reductase delta subunit [Energy production and conversion]	NA|529aa|down_2|NZ_AP022575.1_3446304_3447891_-	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion]	NA|1222aa|down_3|NZ_AP022575.1_3447902_3451568_-	COG5013, NarG, Nitrate reductase alpha subunit [Energy production and conversion]	NA|111aa|down_4|NZ_AP022575.1_3451766_3452099_+	NA	NA|456aa|down_5|NZ_AP022575.1_3452111_3453479_+	pfam02720, DUF222, Domain of unknown function (DUF222)	NA|389aa|down_6|NZ_AP022575.1_3453699_3454866_-	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]	NA|247aa|down_7|NZ_AP022575.1_3455070_3455811_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|209aa|down_8|NZ_AP022575.1_3455835_3456462_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|122aa|down_9|NZ_AP022575.1_3456518_3456884_-	PTZ00395, PTZ00395, Sec24-related protein; Provisional
GCF_010730055.1_ASM1073005v1	NZ_AP022575	Mycobacterium shinjukuense strain JCM 14233	15	3501575-3501662	11	CRISPRCasFinder	no		cas3,DinG,csa3,RT,DEDDh,cas4,WYL,cas2,cas1,csb3,csb2gr5,cas7	Orphan	CGCCGAGCTCAAGCCCGATTGCCCGGCTC	29	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csa3,RT,DEDDh,cas4,WYL,cas2,cas1,csb3,csb2gr5,cas7	NA|98aa|up_6|NZ_AP022575.1_3490721_3491015_-,NA|49aa|down_0|NZ_AP022575.1_3503236_3503383_-	NA|470aa|up_9|NZ_AP022575.1_3488007_3489417_-	TIGR03920, T7SS_EccD, type VII secretion integral membrane protein EccD	NA|300aa|up_8|NZ_AP022575.1_3489480_3490380_-	pfam14011, ESX-1_EspG, EspG family	NA|97aa|up_7|NZ_AP022575.1_3490390_3490681_-	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|98aa|up_6|NZ_AP022575.1_3490721_3491015_-	NA	NA|510aa|up_5|NZ_AP022575.1_3491054_3492584_-	pfam00823, PPE, PPE family	NA|103aa|up_4|NZ_AP022575.1_3492589_3492898_-	pfam00934, PE, PE family	NA|1327aa|up_3|NZ_AP022575.1_3492900_3496881_-	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|545aa|up_2|NZ_AP022575.1_3496877_3498512_-	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|629aa|up_1|NZ_AP022575.1_3498508_3500395_-	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|302aa|up_0|NZ_AP022575.1_3500653_3501559_-	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|49aa|down_0|NZ_AP022575.1_3503236_3503383_-	NA	NA|86aa|down_1|NZ_AP022575.1_3503579_3503837_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|143aa|down_2|NZ_AP022575.1_3503861_3504290_+	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|303aa|down_3|NZ_AP022575.1_3504302_3505211_-	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|238aa|down_4|NZ_AP022575.1_3505299_3506013_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|195aa|down_5|NZ_AP022575.1_3506004_3506589_-	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|378aa|down_6|NZ_AP022575.1_3506929_3508063_+	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|102aa|down_7|NZ_AP022575.1_3508351_3508657_-	pfam02583, Trns_repr_metal, Metal-sensitive transcriptional repressor	NA|335aa|down_8|NZ_AP022575.1_3509019_3510024_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|733aa|down_9|NZ_AP022575.1_3510550_3512749_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26
GCF_010730055.1_ASM1073005v1	NZ_AP022575	Mycobacterium shinjukuense strain JCM 14233	16	4168678-4168779	12	CRISPRCasFinder	no		cas3,DinG,csa3,RT,DEDDh,cas4,WYL,cas2,cas1,csb3,csb2gr5,cas7	Orphan	TTGCCGGGCCGGCGATCGCCACG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csa3,RT,DEDDh,cas4,WYL,cas2,cas1,csb3,csb2gr5,cas7	NA,NA	NA|203aa|up_9|NZ_AP022575.1_4160691_4161300_+	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]	NA|250aa|up_8|NZ_AP022575.1_4161305_4162055_-	COG2968, COG2968, Uncharacterized conserved protein [Function unknown]	NA|100aa|up_7|NZ_AP022575.1_4162569_4162869_+	pfam00934, PE, PE family	NA|414aa|up_6|NZ_AP022575.1_4162882_4164124_+	pfam00823, PPE, PPE family	NA|99aa|up_5|NZ_AP022575.1_4164190_4164487_+	pfam06013, WXG100, Proteins of 100 residues with WXG	NA|95aa|up_4|NZ_AP022575.1_4164525_4164810_+	pfam06013, WXG100, Proteins of 100 residues with WXG	NA|56aa|up_3|NZ_AP022575.1_4165597_4165765_-	cd08262, Zn_ADH8, Alcohol dehydrogenases of the MDR family	NA|397aa|up_2|NZ_AP022575.1_4165854_4167045_-	COG2141, COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases [Energy production and conversion]	NA|323aa|up_1|NZ_AP022575.1_4167041_4168010_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|138aa|up_0|NZ_AP022575.1_4168107_4168521_+	cd07253, GLOD5, Human glyoxalase domain-containing protein 5 and similar proteins	NA|745aa|down_0|NZ_AP022575.1_4168845_4171080_+	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH	NA|203aa|down_1|NZ_AP022575.1_4171095_4171704_+	PRK09347, folE, GTP cyclohydrolase I; Provisional	NA|281aa|down_2|NZ_AP022575.1_4171700_4172543_+	TIGR01496, Dihydropteroate_synthase, dihydropteroate synthase	NA|133aa|down_3|NZ_AP022575.1_4172535_4172934_+	COG1539, FolB, Dihydroneopterin aldolase [Coenzyme metabolism]	NA|179aa|down_4|NZ_AP022575.1_4173058_4173595_+	COG0801, FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]	NA|159aa|down_5|NZ_AP022575.1_4173594_4174071_+	pfam11377, DUF3180, Protein of unknown function (DUF3180)	NA|423aa|down_6|NZ_AP022575.1_4174236_4175505_+	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|304aa|down_7|NZ_AP022575.1_4175601_4176513_+	COG5495, COG5495, Uncharacterized conserved protein [Function unknown]	NA|312aa|down_8|NZ_AP022575.1_4176509_4177445_+	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed	NA|148aa|down_9|NZ_AP022575.1_4177444_4177888_+	pfam02261, Asp_decarbox, Aspartate decarboxylase
