assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_010917555.1_ASM1091755v1	NZ_CP048600	Helicobacter pylori strain GCT 43 chromosome, complete genome	1	638905-639012	1	CRISPRCasFinder	no		cas3,DEDDh	Orphan	GAAACCCAAGAAAACCAAGAAAAC	24	1	2	638968-638988|638968-638988	NZ_CP048600.1_638995-639015|NZ_CP048600.1_639004-639024	NA	2	2	Orphan	cas3,DEDDh	NA,NA|99aa|down_8|NZ_CP048600.1_650352_650649_-	NA|269aa|up_9|NZ_CP048600.1_630002_630809_-	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]	NA|331aa|up_8|NZ_CP048600.1_630832_631825_-	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|261aa|up_7|NZ_CP048600.1_632073_632856_+	PRK13980, PRK13980, NAD synthetase; Provisional	NA|313aa|up_6|NZ_CP048600.1_632852_633791_+	COG1663, LpxK, Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]	NA|181aa|up_5|NZ_CP048600.1_633723_634266_-	TIGR03585, PseH, UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase	NA|296aa|up_4|NZ_CP048600.1_634262_635150_-	COG3980, spsG, Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]	NA|230aa|up_3|NZ_CP048600.1_635119_635809_-	TIGR03584, PseF, pseudaminic acid cytidylyltransferase	NA|238aa|up_2|NZ_CP048600.1_635832_636546_-	PRK00249, flgH, flagellar basal body L-ring protein FlgH	NA|246aa|up_1|NZ_CP048600.1_636686_637424_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|181aa|up_0|NZ_CP048600.1_637430_637973_-	PRK13912, PRK13912, nuclease NucT; Provisional	NA|207aa|down_0|NZ_CP048600.1_639619_640240_+	TIGR03263, Guanylate_kinase, guanylate kinase	NA|80aa|down_1|NZ_CP048600.1_640310_640550_+	PRK00720, tatA, twin-arginine translocase TatA/TatE family subunit	NA|542aa|down_2|NZ_CP048600.1_640552_642178_+	TIGR00456, Arginine--tRNA_ligase, arginyl-tRNA synthetase	NA|252aa|down_3|NZ_CP048600.1_642286_643042_+	TIGR04109, heme_ox_HugZ, heme oxygenase, HugZ family	NA|309aa|down_4|NZ_CP048600.1_643560_644487_-	COG0731, COG0731, Fe-S oxidoreductases [Energy production and conversion]	NA|737aa|down_5|NZ_CP048600.1_644479_646690_-	PRK05582, PRK05582, type I DNA topoisomerase	NA|515aa|down_6|NZ_CP048600.1_646855_648400_+	PRK13588, PRK13588, flagellin B; Provisional	NA|628aa|down_7|NZ_CP048600.1_648459_650343_+	COG2604, COG2604, Uncharacterized protein conserved in bacteria [Function unknown]	NA|99aa|down_8|NZ_CP048600.1_650352_650649_-	NA	NA|213aa|down_9|NZ_CP048600.1_650669_651308_-	PRK05834, PRK05834, hypothetical protein; Provisional
GCF_010917555.1_ASM1091755v1	NZ_CP048600	Helicobacter pylori strain GCT 43 chromosome, complete genome	2	1224675-1224816	2	CRISPRCasFinder	no		cas3,DEDDh	Orphan	AGGCAATTGAAGGATTTTTGGAACGATTTAGAGCATGTCTCTAAGCTGGGAAA	53	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh	NA|86aa|up_5|NZ_CP048600.1_1218945_1219203_-,NA|63aa|up_1|NZ_CP048600.1_1223751_1223940_+,NA|147aa|up_0|NZ_CP048600.1_1224098_1224539_+,NA	NA|416aa|up_9|NZ_CP048600.1_1214691_1215939_+	pfam13231, PMT_2, Dolichyl-phosphate-mannose-protein mannosyltransferase	NA|184aa|up_8|NZ_CP048600.1_1216017_1216569_+	COG2952, COG2952, Uncharacterized protein conserved in bacteria [Function unknown]	NA|376aa|up_7|NZ_CP048600.1_1216568_1217696_+	COG0505, CarA, Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]	NA|335aa|up_6|NZ_CP048600.1_1217861_1218866_+	PRK13287, amiF, formamidase; Provisional	NA|86aa|up_5|NZ_CP048600.1_1218945_1219203_-	NA	NA|191aa|up_4|NZ_CP048600.1_1219937_1220510_-	PRK04056, PRK04056, septum formation inhibitor Maf	NA|848aa|up_3|NZ_CP048600.1_1220511_1223055_-	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|77aa|up_2|NZ_CP048600.1_1223174_1223405_+	COG2841, COG2841, Uncharacterized protein conserved in bacteria [Function unknown]	NA|63aa|up_1|NZ_CP048600.1_1223751_1223940_+	NA	NA|147aa|up_0|NZ_CP048600.1_1224098_1224539_+	NA	NA|73aa|down_0|NZ_CP048600.1_1227728_1227947_+	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General    function prediction only]	NA|65aa|down_1|NZ_CP048600.1_1227939_1228134_+	COG1724, COG1724, Predicted RNA binding protein (dsRBD-like fold), HicA family    [General function prediction only]	NA|616aa|down_2|NZ_CP048600.1_1228207_1230055_-	COG1166, SpeA, Arginine decarboxylase (spermidine biosynthesis) [Amino acid transport and metabolism]	NA|390aa|down_3|NZ_CP048600.1_1230069_1231239_-	cd03817, GT4_UGDG-like, UDP-Glc:1,2-diacylglycerol 3-a-glucosyltransferase and similar proteins	NA|143aa|down_4|NZ_CP048600.1_1231243_1231672_-	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|262aa|down_5|NZ_CP048600.1_1231688_1232474_-	PRK15068, PRK15068, tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA|336aa|down_6|NZ_CP048600.1_1232477_1233485_-	PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional	NA|642aa|down_7|NZ_CP048600.1_1233485_1235411_-	PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed	NA|390aa|down_8|NZ_CP048600.1_1235580_1236750_+	pfam02353, CMAS, Mycolic acid cyclopropane synthetase	NA|624aa|down_9|NZ_CP048600.1_1236759_1238631_-	pfam00924, MS_channel, Mechanosensitive ion channel
GCF_010917555.1_ASM1091755v1	NZ_CP048600	Helicobacter pylori strain GCT 43 chromosome, complete genome	3	1325741-1325841	3	CRISPRCasFinder	no		cas3,DEDDh	Orphan	ATGAAAAAATCCTTTTTAGCGTTTTT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh	NA,NA|125aa|down_0|NZ_CP048600.1_1326387_1326762_+,NA|84aa|down_2|NZ_CP048600.1_1327056_1327308_+,NA|88aa|down_3|NZ_CP048600.1_1327905_1328169_+	NA|642aa|up_9|NZ_CP048600.1_1311712_1313638_-	pfam18304, SabA_adhesion, SabA N-terminal extracellular adhesion domain	NA|234aa|up_8|NZ_CP048600.1_1314477_1315179_-	TIGR00107, Purine_nucleoside_phosphorylase_DeoD-type, purine-nucleoside phosphorylase, family 1 (deoD)	NA|414aa|up_7|NZ_CP048600.1_1315175_1316417_-	PRK05362, PRK05362, phosphopentomutase; Provisional	NA|419aa|up_6|NZ_CP048600.1_1316428_1317685_-	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]	NA|444aa|up_5|NZ_CP048600.1_1318002_1319334_+	cd17472, MFS_YajR_like, Escherichia coli inner membrane transport protein YajR and similar multidrug-efflux transporters of the Major Facilitator Superfamily	NA|257aa|up_4|NZ_CP048600.1_1319353_1320124_+	PRK10696, PRK10696, tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional	NA|384aa|up_3|NZ_CP048600.1_1320120_1321272_-	COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	NA|460aa|up_2|NZ_CP048600.1_1321297_1322677_-	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA	NA|392aa|up_1|NZ_CP048600.1_1322846_1324022_-	PRK03545, PRK03545, putative arabinose transporter; Provisional	NA|248aa|up_0|NZ_CP048600.1_1324299_1325043_+	COG3338, Cah, Carbonic anhydrase [Inorganic ion transport and metabolism]	NA|125aa|down_0|NZ_CP048600.1_1326387_1326762_+	NA	NA|89aa|down_1|NZ_CP048600.1_1326742_1327009_+	pfam15738, YafQ_toxin, Bacterial toxin of type II toxin-antitoxin system, YafQ	NA|84aa|down_2|NZ_CP048600.1_1327056_1327308_+	NA	NA|88aa|down_3|NZ_CP048600.1_1327905_1328169_+	NA	NA|101aa|down_4|NZ_CP048600.1_1328177_1328480_+	COG3041, COG3041, Uncharacterized protein conserved in bacteria [Function unknown]	NA|175aa|down_5|NZ_CP048600.1_1328558_1329083_-	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism]	NA|283aa|down_6|NZ_CP048600.1_1329222_1330071_+	cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs	NA|327aa|down_7|NZ_CP048600.1_1330063_1331044_+	pfam01032, FecCD, FecCD transport family	NA|256aa|down_8|NZ_CP048600.1_1331043_1331811_+	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|355aa|down_9|NZ_CP048600.1_1331932_1332997_+	COG1442, RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]
GCF_010917555.1_ASM1091755v1	NZ_CP048600	Helicobacter pylori strain GCT 43 chromosome, complete genome	4	1543375-1543573	1,4	CRT,CRISPRCasFinder	no		cas3,DEDDh	Orphan	TGTTAAAATTATAAGTCCCTTGATTGAA,TTAAAATTATAAGTCCCTTGATTGAA	28,26	0	0	NA	NA	I-B:I-B	3,3	3	Orphan	cas3,DEDDh	NA|297aa|up_7|NZ_CP048600.1_1529143_1530034_+,NA	NA|95aa|up_9|NZ_CP048600.1_1527254_1527539_-	COG0776, HimA, Bacterial nucleoid DNA-binding protein [DNA replication, recombination, and repair]	NA|463aa|up_8|NZ_CP048600.1_1527678_1529067_-	PRK00093, PRK00093, GTP-binding protein Der; Reviewed	NA|297aa|up_7|NZ_CP048600.1_1529143_1530034_+	NA	NA|263aa|up_6|NZ_CP048600.1_1530126_1530915_+	PRK00536, speE, spermidine synthase; Provisional	NA|197aa|up_5|NZ_CP048600.1_1530916_1531507_+	PRK00081, coaE, dephospho-CoA kinase; Reviewed	NA|454aa|up_4|NZ_CP048600.1_1531565_1532927_+	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA|482aa|up_3|NZ_CP048600.1_1532936_1534382_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|227aa|up_2|NZ_CP048600.1_1534503_1535184_+	COG0356, AtpB, F0F1-type ATP synthase, subunit a [Energy production and conversion]	NA|83aa|up_1|NZ_CP048600.1_1535507_1535756_+	cd12399, RRM_HP0827_like, RNA recognition motif in Helicobacter pylori HP0827 protein and similar proteins	NA|274aa|up_0|NZ_CP048600.1_1535973_1536795_-	COG3306, COG3306, Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane]	NA|333aa|down_0|NZ_CP048600.1_1544433_1545432_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|231aa|down_1|NZ_CP048600.1_1545576_1546269_+	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins	NA|1086aa|down_2|NZ_CP048600.1_1546367_1549625_+	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|144aa|down_3|NZ_CP048600.1_1549629_1550061_+	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]	NA|816aa|down_4|NZ_CP048600.1_1550318_1552766_+	COG1629, CirA, Outer membrane receptor proteins, mostly Fe transport [Inorganic ion transport and metabolism]	NA|515aa|down_5|NZ_CP048600.1_1553095_1554640_+	pfam02521, HP_OMP_2, Putative outer membrane protein	NA|532aa|down_6|NZ_CP048600.1_1555152_1556748_-	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|515aa|down_7|NZ_CP048600.1_1556769_1558314_-	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|676aa|down_8|NZ_CP048600.1_1559509_1561537_-	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|382aa|down_9|NZ_CP048600.1_1561545_1562691_-	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]
