assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_011039955.1_ASM1103995v1	NZ_CP049316	Caballeronia sp. SBC2 chromosome, complete genome	1	116937-118436	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	cas3,cas2,cas1,cas4,cas7,cas8c,cas5,RT,WYL,DEDDh,DinG,csa3	 Type I-U?,Type I-U,Type I-C	GTTTCAATCCACGCGCCCGTGAAGAGCGCGAC,GTTTCAATCCACGCGCCCGTGAAGAGCGCGAC,GTTTCAATCCACGCGCCCGTGAAGAGCGCGAC	32,32,32	0	0	NA	NA	I-C:I-C:I-C	22,22,22	22	TypeI-U?,TypeI-U,TypeI-C	cas3,cas2,cas1,cas4,cas7,cas8c,cas5,RT,WYL,DEDDh,DinG,csa3,csx1,PD-DExK	NA|205aa|up_8|NZ_CP049316.1_107627_108242_+,NA	NA|377aa|up_9|NZ_CP049316.1_106500_107631_+	cd14744, PAAR_CT_2, proline-alanine-alanine-arginine (PAAR) domain with uncharacterized C-terminal extension	NA|205aa|up_8|NZ_CP049316.1_107627_108242_+	NA	NA|159aa|up_7|NZ_CP049316.1_108427_108904_+	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]	NA|808aa|up_6|NZ_CP049316.1_108994_111418_+	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]	NA|267aa|up_5|NZ_CP049316.1_111430_112231_+	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]	NA|296aa|up_4|NZ_CP049316.1_112332_113220_+	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|404aa|up_3|NZ_CP049316.1_113226_114438_+	COG3552, CoxE, Protein containing von Willebrand factor type A (vWA) domain [General function prediction only]	NA|176aa|up_2|NZ_CP049316.1_114428_114956_+	cd05018, CoxG, Carbon monoxide dehydrogenase subunit G (CoxG)	NA|340aa|up_1|NZ_CP049316.1_114928_115948_+	COG1975, XdhC, Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family [Posttranslational modification, protein turnover, chaperones]	NA|250aa|up_0|NZ_CP049316.1_116005_116755_-	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only]	cas2|97aa|down_0|NZ_CP049316.1_118630_118921_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|347aa|down_1|NZ_CP049316.1_118931_119972_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|215aa|down_2|NZ_CP049316.1_119974_120619_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|291aa|down_3|NZ_CP049316.1_120623_121496_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8c|605aa|down_4|NZ_CP049316.1_121492_123307_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|225aa|down_5|NZ_CP049316.1_123303_123978_-	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|739aa|down_6|NZ_CP049316.1_124064_126281_-	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	NA|374aa|down_7|NZ_CP049316.1_128366_129488_+	pfam03929, PepSY_TM, PepSY-associated TM region	NA|227aa|down_8|NZ_CP049316.1_129585_130266_-	COG3295, COG3295, Uncharacterized protein conserved in bacteria [Function unknown]	NA|355aa|down_9|NZ_CP049316.1_130541_131606_-	PRK11768, PRK11768, serine/threonine protein kinase
GCF_011039955.1_ASM1103995v1	NZ_CP049316	Caballeronia sp. SBC2 chromosome, complete genome	2	126435-127864	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	cas3,cas2,cas1,cas4,cas7,cas8c,cas5,RT,WYL,DEDDh,DinG,csa3	 Type I-U?,Type I-U,Type I-C	GTTTCAATCCACGCGCCCGTGAAGGGCGCGAC,GTTTCAATCCACGCGCCCGTGAAGGGCGCGAC,GTTTCAATCCACGCGCCCGTGAAGGGCGCGAC	32,32,32	1	1	127400-127434	NZ_CP049316.1_1495069-1495103	I-C:I-C:I-C	21,21,20	21	TypeI-U?,TypeI-U,TypeI-C	cas3,cas2,cas1,cas4,cas7,cas8c,cas5,RT,WYL,DEDDh,DinG,csa3,csx1,PD-DExK	NA,NA|71aa|down_3|NZ_CP049316.1_131690_131903_-,NA|62aa|down_5|NZ_CP049316.1_133736_133922_+	NA|176aa|up_9|NZ_CP049316.1_114428_114956_+	cd05018, CoxG, Carbon monoxide dehydrogenase subunit G (CoxG)	NA|340aa|up_8|NZ_CP049316.1_114928_115948_+	COG1975, XdhC, Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family [Posttranslational modification, protein turnover, chaperones]	NA|250aa|up_7|NZ_CP049316.1_116005_116755_-	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only]	cas2|97aa|up_6|NZ_CP049316.1_118630_118921_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|347aa|up_5|NZ_CP049316.1_118931_119972_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|215aa|up_4|NZ_CP049316.1_119974_120619_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|291aa|up_3|NZ_CP049316.1_120623_121496_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8c|605aa|up_2|NZ_CP049316.1_121492_123307_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|225aa|up_1|NZ_CP049316.1_123303_123978_-	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|739aa|up_0|NZ_CP049316.1_124064_126281_-	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	NA|374aa|down_0|NZ_CP049316.1_128366_129488_+	pfam03929, PepSY_TM, PepSY-associated TM region	NA|227aa|down_1|NZ_CP049316.1_129585_130266_-	COG3295, COG3295, Uncharacterized protein conserved in bacteria [Function unknown]	NA|355aa|down_2|NZ_CP049316.1_130541_131606_-	PRK11768, PRK11768, serine/threonine protein kinase	NA|71aa|down_3|NZ_CP049316.1_131690_131903_-	NA	NA|419aa|down_4|NZ_CP049316.1_132235_133492_+	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|62aa|down_5|NZ_CP049316.1_133736_133922_+	NA	NA|261aa|down_6|NZ_CP049316.1_134236_135019_+	pfam06966, DUF1295, Protein of unknown function (DUF1295)	NA|362aa|down_7|NZ_CP049316.1_135070_136156_+	COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]	NA|491aa|down_8|NZ_CP049316.1_136185_137658_-	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]	NA|232aa|down_9|NZ_CP049316.1_137736_138432_-	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_011039955.1_ASM1103995v1	NZ_CP049316	Caballeronia sp. SBC2 chromosome, complete genome	3	648240-648347	3	CRISPRCasFinder	no		cas3,cas2,cas1,cas4,cas7,cas8c,cas5,RT,WYL,DEDDh,DinG,csa3	Orphan	ACGTACTCGCCGGATGTTGACCCGGCG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,cas2,cas1,cas4,cas7,cas8c,cas5,RT,WYL,DEDDh,DinG,csa3,csx1,PD-DExK	NA,NA|290aa|down_0|NZ_CP049316.1_648422_649292_+,NA|127aa|down_4|NZ_CP049316.1_653464_653845_+,NA|66aa|down_5|NZ_CP049316.1_653939_654137_-,NA|169aa|down_8|NZ_CP049316.1_656925_657432_+	NA|166aa|up_9|NZ_CP049316.1_637950_638448_-	TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase	NA|572aa|up_8|NZ_CP049316.1_638428_640144_-	PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed	NA|307aa|up_7|NZ_CP049316.1_640349_641270_-	COG4535, CorC, Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]	NA|227aa|up_6|NZ_CP049316.1_641505_642186_-	COG3703, ChaC, Uncharacterized protein involved in cation transport [Inorganic ion transport and metabolism]	NA|156aa|up_5|NZ_CP049316.1_642189_642657_-	PRK13963, PRK13963, rRNA maturation RNase YbeY	NA|366aa|up_4|NZ_CP049316.1_642694_643792_-	COG1702, PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]	NA|454aa|up_3|NZ_CP049316.1_643834_645196_-	PRK14325, PRK14325, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	NA|322aa|up_2|NZ_CP049316.1_645378_646344_-	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|141aa|up_1|NZ_CP049316.1_646512_646935_+	cd07245, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|393aa|up_0|NZ_CP049316.1_646945_648124_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|290aa|down_0|NZ_CP049316.1_648422_649292_+	NA	NA|242aa|down_1|NZ_CP049316.1_649519_650245_-	PRK03353, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional	NA|262aa|down_2|NZ_CP049316.1_650694_651480_-	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain	NA|525aa|down_3|NZ_CP049316.1_651644_653219_-	PRK12266, glpD, glycerol-3-phosphate dehydrogenase; Reviewed	NA|127aa|down_4|NZ_CP049316.1_653464_653845_+	NA	NA|66aa|down_5|NZ_CP049316.1_653939_654137_-	NA	NA|260aa|down_6|NZ_CP049316.1_654466_655246_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|276aa|down_7|NZ_CP049316.1_656010_656838_+	cd00657, Ferritin_like, Ferritin-like superfamily of diiron-containing four-helix-bundle proteins	NA|169aa|down_8|NZ_CP049316.1_656925_657432_+	NA	NA|497aa|down_9|NZ_CP049316.1_657616_659107_-	PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional
GCF_011039955.1_ASM1103995v1	NZ_CP049320	Caballeronia sp. SBC2 plasmid pSBC2-4, complete sequence	1	49708-49967	1	PILER-CR	no			Orphan	GAAGGTGAGGTTAATTGTGCA	21	0	0	NA	NA	NA	3	3	Orphan	cas3,cas2,cas1,cas4,cas7,cas8c,cas5,RT,WYL,DEDDh,DinG,csa3,csx1,PD-DExK	NA,NA|102aa|down_6|NZ_CP049320.1_59568_59874_+,NA|89aa|down_8|NZ_CP049320.1_62293_62560_+,NA|85aa|down_9|NZ_CP049320.1_62748_63003_+	NA|400aa|up_9|NZ_CP049320.1_34856_36056_-	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane	NA|451aa|up_8|NZ_CP049320.1_36132_37485_-	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]	NA|176aa|up_7|NZ_CP049320.1_37487_38015_-	COG3090, DctM, TRAP-type C4-dicarboxylate transport system, small permease component [Carbohydrate transport and metabolism]	NA|331aa|up_6|NZ_CP049320.1_38142_39135_-	cd13671, PBP2_TRAP_SBP_like_3, Uncharacterized substrate-binding protein of the Tripartite ATP-independent  Periplasmic transporter family; the type 2 periplasmic-binding protein fold	NA|530aa|up_5|NZ_CP049320.1_40077_41667_-	TIGR03248, galactar-dH20, galactarate dehydratase	NA|306aa|up_4|NZ_CP049320.1_41869_42787_+	PRK03620, PRK03620, 5-dehydro-4-deoxyglucarate dehydratase; Provisional	NA|452aa|up_3|NZ_CP049320.1_43000_44356_+	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter	NA|155aa|up_2|NZ_CP049320.1_46019_46484_+	pfam08334, T2SSG, Type II secretion system (T2SS), protein G	NA|258aa|up_1|NZ_CP049320.1_46569_47343_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|468aa|up_0|NZ_CP049320.1_47797_49201_-	pfam01051, Rep_3, Initiator Replication protein	NA|404aa|down_0|NZ_CP049320.1_50270_51482_+	TIGR03453, partition_RepA, plasmid partitioning protein RepA	NA|326aa|down_1|NZ_CP049320.1_51478_52456_+	cd16393, SPO0J_N, Thermus thermophilus stage 0 sporulation protein J-like N-terminal domain, ParB family member	NA|167aa|down_2|NZ_CP049320.1_54003_54504_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|326aa|down_3|NZ_CP049320.1_56020_56998_+	cd11589, Agmatinase_like_1, Agmatinase and related proteins	NA|312aa|down_4|NZ_CP049320.1_56998_57934_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|381aa|down_5|NZ_CP049320.1_58160_59303_+	cd06342, PBP1_ABC_LIVBP-like, type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine)	NA|102aa|down_6|NZ_CP049320.1_59568_59874_+	NA	NA|248aa|down_7|NZ_CP049320.1_61243_61987_+	TIGR01829, Acetoacetyl-CoA_reductase, acetoacetyl-CoA reductase	NA|89aa|down_8|NZ_CP049320.1_62293_62560_+	NA	NA|85aa|down_9|NZ_CP049320.1_62748_63003_+	NA
