assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_011040495.1_ASM1104049v1	NZ_CP049037	Pseudohalocynthiibacter aestuariivivens strain RR4-35 chromosome, complete genome	1	55507-55630	1	PILER-CR	no		cas3,cas9,cas1,cas2,RT,WYL,DEDDh,csa3	Orphan	GTCGTCGCCATCGCCGCCGA	20	0	0	NA	NA	NA	2	2	Orphan	cas3,cas9,cas1,cas2,RT,WYL,DEDDh,csa3	NA|435aa|up_5|NZ_CP049037.1_46448_47753_-,NA|76aa|up_2|NZ_CP049037.1_51271_51499_+,NA	NA|169aa|up_9|NZ_CP049037.1_42206_42713_-	PRK07531, PRK07531, carnitine 3-dehydrogenase	NA|398aa|up_8|NZ_CP049037.1_42861_44055_-	cd04733, OYE_like_2_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 2	NA|504aa|up_7|NZ_CP049037.1_44357_45869_-	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA|109aa|up_6|NZ_CP049037.1_46083_46410_+	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|435aa|up_5|NZ_CP049037.1_46448_47753_-	NA	NA|226aa|up_4|NZ_CP049037.1_47909_48587_+	cd00442, Lyz-like, lysozyme-like domains	NA|851aa|up_3|NZ_CP049037.1_48590_51143_-	PRK14015, pepN, aminopeptidase N; Provisional	NA|76aa|up_2|NZ_CP049037.1_51271_51499_+	NA	NA|259aa|up_1|NZ_CP049037.1_51683_52460_+	COG2071, COG2071, Predicted glutamine amidotransferases [General function prediction only]	NA|613aa|up_0|NZ_CP049037.1_52476_54315_-	pfam13403, Hint_2, Hint domain	NA|132aa|down_0|NZ_CP049037.1_57516_57912_-	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|150aa|down_1|NZ_CP049037.1_58065_58515_+	COG2020, STE14, Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones]	NA|525aa|down_2|NZ_CP049037.1_58642_60217_+	PRK09424, pntA, Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	NA|478aa|down_3|NZ_CP049037.1_60230_61664_+	pfam02233, PNTB, NAD(P) transhydrogenase beta subunit	NA|427aa|down_4|NZ_CP049037.1_61843_63124_+	pfam11902, DUF3422, Protein of unknown function (DUF3422)	NA|283aa|down_5|NZ_CP049037.1_63126_63975_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|336aa|down_6|NZ_CP049037.1_63967_64975_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|566aa|down_7|NZ_CP049037.1_65028_66726_-	cd08513, PBP2_thermophilic_Hb8_like, The substrate-binding component of ABC-type thermophilic oligopeptide-binding protein Hb8-like import systems, contains the type 2 periplasmic binding fold	NA|580aa|down_8|NZ_CP049037.1_66937_68677_+	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|387aa|down_9|NZ_CP049037.1_68718_69879_+	cd05666, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily
GCF_011040495.1_ASM1104049v1	NZ_CP049037	Pseudohalocynthiibacter aestuariivivens strain RR4-35 chromosome, complete genome	2	1352049-1353333	2,1,1,3	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas9,cas1,cas2	cas3,cas9,cas1,cas2,RT,WYL,DEDDh,csa3	 Type II-B,Type II-B, or Type II-C?,Type II-A,Type II-C	ATTGTAGCTGTTCAAAATTCGCGGTCCAGCCGCAACC,ATTGTAGCTGTTCAAAATTCGCGGTCCAGCCGCAAC,ATTGTAGCTGTTCAAAATTCGCGGTCCAGCCGCAAC,ATTGTAGCTGTTCAAAATTCGCGGTCCAGCCGCAAC	37,36,36,36	0	0	NA	NA	NA:NA:NA:NA	13,19,19,13	19	TypeII-B,TypeII-B,orTypeII-C?,TypeII-A,TypeII-C	cas3,cas9,cas1,cas2,RT,WYL,DEDDh,csa3	NA,NA	NA|429aa|up_9|NZ_CP049037.1_1338432_1339719_+	PRK06349, PRK06349, homoserine dehydrogenase; Provisional	NA|322aa|up_8|NZ_CP049037.1_1339805_1340771_+	PRK09479, glpX, fructose 1,6-bisphosphatase II; Reviewed	NA|560aa|up_7|NZ_CP049037.1_1340883_1342563_+	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|542aa|up_6|NZ_CP049037.1_1342929_1344555_-	smart00857, Resolvase, Resolvase, N terminal domain	NA|128aa|up_5|NZ_CP049037.1_1344556_1344940_-	pfam11149, DUF2924, Protein of unknown function (DUF2924)	NA|99aa|up_4|NZ_CP049037.1_1344993_1345290_-	pfam11994, DUF3489, Protein of unknown function (DUF3489)	NA|462aa|up_3|NZ_CP049037.1_1345516_1346902_+	pfam05598, DUF772, Transposase domain (DUF772)	cas9|1085aa|up_2|NZ_CP049037.1_1347404_1350659_+	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9	cas1|304aa|up_1|NZ_CP049037.1_1350722_1351634_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|102aa|up_0|NZ_CP049037.1_1351669_1351975_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	NA|97aa|down_0|NZ_CP049037.1_1353463_1353754_-	pfam11994, DUF3489, Protein of unknown function (DUF3489)	NA|288aa|down_1|NZ_CP049037.1_1354737_1355601_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|384aa|down_2|NZ_CP049037.1_1355687_1356839_+	cd08659, M20_ArgE_DapE-like, Peptidase M20 acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE)-like	NA|261aa|down_3|NZ_CP049037.1_1356835_1357618_+	COG2071, COG2071, Predicted glutamine amidotransferases [General function prediction only]	NA|256aa|down_4|NZ_CP049037.1_1357614_1358382_+	TIGR02990, ectoine_eutA, ectoine utilization protein EutA	NA|298aa|down_5|NZ_CP049037.1_1358484_1359378_+	cd13643, PBP2_BCP_2, Substrate-binding domain of osmoregulatory ABC-type glycine betaine/choline/L-proline transport system-like; the type 2 periplasmic-binding protein fold	NA|337aa|down_6|NZ_CP049037.1_1359424_1360435_+	cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system	NA|633aa|down_7|NZ_CP049037.1_1360518_1362417_+	COG4176, ProW, ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism]	NA|554aa|down_8|NZ_CP049037.1_1362432_1364094_+	PRK02106, PRK02106, choline dehydrogenase; Validated	NA|389aa|down_9|NZ_CP049037.1_1364150_1365317_+	pfam00171, Aldedh, Aldehyde dehydrogenase family
GCF_011040495.1_ASM1104049v1	NZ_CP049037	Pseudohalocynthiibacter aestuariivivens strain RR4-35 chromosome, complete genome	3	1784338-1784406	2	CRISPRCasFinder	no		cas3,cas9,cas1,cas2,RT,WYL,DEDDh,csa3	Orphan	TGCCGGGCTGAAGCCCGGCCTAC	23	0	0	NA	NA	NA	1	1	Orphan	cas3,cas9,cas1,cas2,RT,WYL,DEDDh,csa3	NA|245aa|up_4|NZ_CP049037.1_1776777_1777512_+,NA	NA|131aa|up_9|NZ_CP049037.1_1770931_1771324_+	cd17552, REC_RR468-like, phosphoacceptor receiver (REC) domain of Thermotoga maritima response regulator RR468 and similar domains	NA|616aa|up_8|NZ_CP049037.1_1771502_1773350_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|348aa|up_7|NZ_CP049037.1_1773727_1774771_-	pfam05598, DUF772, Transposase domain (DUF772)	NA|369aa|up_6|NZ_CP049037.1_1774886_1775993_+	COG2067, FadL, Long-chain fatty acid transport protein [Lipid metabolism]	NA|72aa|up_5|NZ_CP049037.1_1776000_1776216_+	pfam00665, rve, Integrase core domain	NA|245aa|up_4|NZ_CP049037.1_1776777_1777512_+	NA	NA|508aa|up_3|NZ_CP049037.1_1778160_1779684_-	pfam02113, Peptidase_S13, D-Ala-D-Ala carboxypeptidase 3 (S13) family	NA|206aa|up_2|NZ_CP049037.1_1779882_1780500_-	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase	NA|588aa|up_1|NZ_CP049037.1_1780690_1782454_+	cd01948, EAL, EAL domain	NA|552aa|up_0|NZ_CP049037.1_1782553_1784209_+	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed	NA|114aa|down_0|NZ_CP049037.1_1785034_1785376_-	pfam14384, BrnA_antitoxin, BrnA antitoxin of type II toxin-antitoxin system	NA|383aa|down_1|NZ_CP049037.1_1785544_1786693_+	COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]	NA|69aa|down_2|NZ_CP049037.1_1786884_1787091_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|237aa|down_3|NZ_CP049037.1_1787152_1787863_-	cd01822, Lysophospholipase_L1_like, Lysophospholipase L1-like subgroup of SGNH-hydrolases	NA|229aa|down_4|NZ_CP049037.1_1787861_1788548_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|840aa|down_5|NZ_CP049037.1_1788544_1791064_+	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|950aa|down_6|NZ_CP049037.1_1791189_1794039_-	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|120aa|down_7|NZ_CP049037.1_1794181_1794541_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|375aa|down_8|NZ_CP049037.1_1794560_1795685_-	PRK13579, gcvT, glycine cleavage system aminomethyltransferase GcvT	NA|156aa|down_9|NZ_CP049037.1_1796046_1796514_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]
GCF_011040495.1_ASM1104049v1	NZ_CP049037	Pseudohalocynthiibacter aestuariivivens strain RR4-35 chromosome, complete genome	4	1784587-1784724	3	CRISPRCasFinder	no		cas3,cas9,cas1,cas2,RT,WYL,DEDDh,csa3	Orphan	TGCCGGGCTGAAGCCCGGCCTAC	23	0	0	NA	NA	NA	2	2	Orphan	cas3,cas9,cas1,cas2,RT,WYL,DEDDh,csa3	NA|245aa|up_4|NZ_CP049037.1_1776777_1777512_+,NA	NA|131aa|up_9|NZ_CP049037.1_1770931_1771324_+	cd17552, REC_RR468-like, phosphoacceptor receiver (REC) domain of Thermotoga maritima response regulator RR468 and similar domains	NA|616aa|up_8|NZ_CP049037.1_1771502_1773350_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|348aa|up_7|NZ_CP049037.1_1773727_1774771_-	pfam05598, DUF772, Transposase domain (DUF772)	NA|369aa|up_6|NZ_CP049037.1_1774886_1775993_+	COG2067, FadL, Long-chain fatty acid transport protein [Lipid metabolism]	NA|72aa|up_5|NZ_CP049037.1_1776000_1776216_+	pfam00665, rve, Integrase core domain	NA|245aa|up_4|NZ_CP049037.1_1776777_1777512_+	NA	NA|508aa|up_3|NZ_CP049037.1_1778160_1779684_-	pfam02113, Peptidase_S13, D-Ala-D-Ala carboxypeptidase 3 (S13) family	NA|206aa|up_2|NZ_CP049037.1_1779882_1780500_-	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase	NA|588aa|up_1|NZ_CP049037.1_1780690_1782454_+	cd01948, EAL, EAL domain	NA|552aa|up_0|NZ_CP049037.1_1782553_1784209_+	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed	NA|114aa|down_0|NZ_CP049037.1_1785034_1785376_-	pfam14384, BrnA_antitoxin, BrnA antitoxin of type II toxin-antitoxin system	NA|383aa|down_1|NZ_CP049037.1_1785544_1786693_+	COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]	NA|69aa|down_2|NZ_CP049037.1_1786884_1787091_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|237aa|down_3|NZ_CP049037.1_1787152_1787863_-	cd01822, Lysophospholipase_L1_like, Lysophospholipase L1-like subgroup of SGNH-hydrolases	NA|229aa|down_4|NZ_CP049037.1_1787861_1788548_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|840aa|down_5|NZ_CP049037.1_1788544_1791064_+	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|950aa|down_6|NZ_CP049037.1_1791189_1794039_-	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|120aa|down_7|NZ_CP049037.1_1794181_1794541_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|375aa|down_8|NZ_CP049037.1_1794560_1795685_-	PRK13579, gcvT, glycine cleavage system aminomethyltransferase GcvT	NA|156aa|down_9|NZ_CP049037.1_1796046_1796514_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]
