assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_011044415.1_ASM1104441v1	NZ_CP049140	Pseudomonas nitroreducens strain HBP1 chromosome, complete genome	1	185744-185847	1	CRISPRCasFinder	no		RT,DEDDh,DinG,csa3,PD-DExK,cas3	Orphan	GGGGATCGGCTTGGGCGGCGGCGGTT	26	0	0	NA	NA	NA	1	1	Orphan	RT,DEDDh,DinG,csa3,PD-DExK,cas3	NA,NA|126aa|down_3|NZ_CP049140.1_189393_189771_-	NA|780aa|up_9|NZ_CP049140.1_172793_175133_-	TIGR02965, xanthine_dehydrogenase, xanthine dehydrogenase, molybdopterin binding subunit	NA|475aa|up_8|NZ_CP049140.1_175125_176550_-	TIGR02963, Includes:_Xanthine_dehydrogenase, xanthine dehydrogenase, small subunit	NA|188aa|up_7|NZ_CP049140.1_177017_177581_+	TIGR03137, AhpC, peroxiredoxin	NA|522aa|up_6|NZ_CP049140.1_177778_179344_+	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|478aa|up_5|NZ_CP049140.1_179424_180858_-	PRK01642, cls, cardiolipin synthetase; Reviewed	NA|466aa|up_4|NZ_CP049140.1_180900_182298_-	PRK07042, PRK07042, amidase; Provisional	NA|194aa|up_3|NZ_CP049140.1_182391_182973_-	pfam06821, Ser_hydrolase, Serine hydrolase	NA|218aa|up_2|NZ_CP049140.1_183091_183745_-	COG3703, ChaC, Uncharacterized protein involved in cation transport [Inorganic ion transport and metabolism]	NA|134aa|up_1|NZ_CP049140.1_184166_184568_-	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion]	NA|239aa|up_0|NZ_CP049140.1_184569_185286_-	COG0811, TolQ, Biopolymer transport proteins [Intracellular trafficking and secretion]	NA|261aa|down_0|NZ_CP049140.1_186574_187357_-	cd13597, PBP2_lipoprotein_Tp32, The substrate-binding domain of the 32-kilodalton lipoprotein (Tp32) from Treponema pallidum binds L-methionine; the type 2 periplasmic-binding protein fold	NA|222aa|down_1|NZ_CP049140.1_187397_188063_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|337aa|down_2|NZ_CP049140.1_188059_189070_-	PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional	NA|126aa|down_3|NZ_CP049140.1_189393_189771_-	NA	NA|263aa|down_4|NZ_CP049140.1_189808_190597_-	PRK09543, znuB, zinc ABC transporter permease subunit ZnuB	NA|267aa|down_5|NZ_CP049140.1_190589_191390_-	PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed	NA|169aa|down_6|NZ_CP049140.1_191389_191896_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|314aa|down_7|NZ_CP049140.1_191966_192908_+	COG4531, ZnuA, ABC-type Zn2+ transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]	NA|310aa|down_8|NZ_CP049140.1_193035_193965_-	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|292aa|down_9|NZ_CP049140.1_194068_194944_+	PRK09986, PRK09986, LysR family transcriptional regulator
GCF_011044415.1_ASM1104441v1	NZ_CP049140	Pseudomonas nitroreducens strain HBP1 chromosome, complete genome	2	1645095-1645334	2	CRISPRCasFinder	no		RT,DEDDh,DinG,csa3,PD-DExK,cas3	Orphan	CACCGTTGAGGGTGTCGTTGCCTG	24	0	0	NA	NA	NA	4	4	Orphan	RT,DEDDh,DinG,csa3,PD-DExK,cas3	NA|129aa|up_9|NZ_CP049140.1_1637188_1637575_-,NA|60aa|up_8|NZ_CP049140.1_1638361_1638541_-,NA|169aa|up_5|NZ_CP049140.1_1641383_1641890_+,NA|80aa|up_4|NZ_CP049140.1_1642076_1642316_-,NA|148aa|up_3|NZ_CP049140.1_1642312_1642756_-,NA|110aa|up_0|NZ_CP049140.1_1644319_1644649_-,NA|189aa|down_9|NZ_CP049140.1_1669759_1670326_+	NA|129aa|up_9|NZ_CP049140.1_1637188_1637575_-	NA	NA|60aa|up_8|NZ_CP049140.1_1638361_1638541_-	NA	NA|240aa|up_7|NZ_CP049140.1_1638543_1639263_-	pfam13401, AAA_22, AAA domain	NA|682aa|up_6|NZ_CP049140.1_1639280_1641326_-	pfam09299, Mu-transpos_C, Mu transposase, C-terminal	NA|169aa|up_5|NZ_CP049140.1_1641383_1641890_+	NA	NA|80aa|up_4|NZ_CP049140.1_1642076_1642316_-	NA	NA|148aa|up_3|NZ_CP049140.1_1642312_1642756_-	NA	NA|113aa|up_2|NZ_CP049140.1_1642758_1643097_-	pfam13693, HTH_35, Winged helix-turn-helix DNA-binding	NA|239aa|up_1|NZ_CP049140.1_1643277_1643994_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|110aa|up_0|NZ_CP049140.1_1644319_1644649_-	NA	NA|450aa|down_0|NZ_CP049140.1_1658662_1660012_+	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family	NA|719aa|down_1|NZ_CP049140.1_1660033_1662190_+	TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family	NA|457aa|down_2|NZ_CP049140.1_1662179_1663550_+	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|214aa|down_3|NZ_CP049140.1_1663616_1664258_-	COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only]	NA|295aa|down_4|NZ_CP049140.1_1664381_1665266_-	TIGR01692, 3-hydroxyisobutyrate_dehydrogenase_mitochondrial, 3-hydroxyisobutyrate dehydrogenase	NA|368aa|down_5|NZ_CP049140.1_1665400_1666504_-	pfam16113, ECH_2, Enoyl-CoA hydratase/isomerase	NA|273aa|down_6|NZ_CP049140.1_1666514_1667333_-	PRK09076, PRK09076, enoyl-CoA hydratase; Provisional	NA|388aa|down_7|NZ_CP049140.1_1667457_1668621_-	cd01162, IBD, Isobutyryl-CoA dehydrogenase	NA|307aa|down_8|NZ_CP049140.1_1668743_1669664_+	cd06986, cupin_MmsR-like_N, AraC/XylS family transcriptional regulators similar to MmsR, N-terminal cupin domain	NA|189aa|down_9|NZ_CP049140.1_1669759_1670326_+	NA
GCF_011044415.1_ASM1104441v1	NZ_CP049140	Pseudomonas nitroreducens strain HBP1 chromosome, complete genome	3	4364374-4364533	1	PILER-CR	no		RT,DEDDh,DinG,csa3,PD-DExK,cas3	Orphan	CCTGCTGCGCCGCAGCGGC	19	0	0	NA	NA	NA	2	2	Orphan	RT,DEDDh,DinG,csa3,PD-DExK,cas3	NA,NA|137aa|down_7|NZ_CP049140.1_4372793_4373204_+,NA|174aa|down_8|NZ_CP049140.1_4373347_4373869_+	NA|395aa|up_9|NZ_CP049140.1_4354807_4355992_-	cd17555, REC_RssB-like, phosphoacceptor receiver (REC) domain of Pseudomonas aeruginosa RssB and similar domains	NA|235aa|up_8|NZ_CP049140.1_4356173_4356878_-	pfam04333, MlaA, MlaA lipoprotein	NA|239aa|up_7|NZ_CP049140.1_4357046_4357763_-	TIGR03337, phnR, phosphonate utilization transcriptional regulator PhnR	NA|248aa|up_6|NZ_CP049140.1_4357875_4358619_+	PRK13478, PRK13478, phosphonoacetaldehyde hydrolase; Provisional	NA|194aa|up_5|NZ_CP049140.1_4358615_4359197_+	TIGR03276, Phn-HD, phosphonate degradation operons associated HDIG domain protein	NA|88aa|up_4|NZ_CP049140.1_4359275_4359539_+	pfam14357, DUF4404, Domain of unknown function (DUF4404)	NA|277aa|up_3|NZ_CP049140.1_4359609_4360440_-	PRK11792, queF, 7-cyano-7-deazaguanine reductase; Provisional	NA|236aa|up_2|NZ_CP049140.1_4360653_4361361_-	pfam05275, CopB, Copper resistance protein B precursor (CopB)	NA|560aa|up_1|NZ_CP049140.1_4361370_4363050_-	TIGR01480, unnamed_protein_product, copper-resistance protein, CopA family	NA|181aa|up_0|NZ_CP049140.1_4363060_4363603_-	cd04211, Cupredoxin_like_2, Uncharacterized Cupredoxin-like subfamily	NA|439aa|down_0|NZ_CP049140.1_4364709_4366026_+	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase	NA|260aa|down_1|NZ_CP049140.1_4366229_4367009_-	PRK15066, PRK15066, inner membrane transport permease; Provisional	NA|311aa|down_2|NZ_CP049140.1_4367005_4367938_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|206aa|down_3|NZ_CP049140.1_4368043_4368661_-	cd03180, GST_C_2, C-terminal, alpha helical domain of an unknown subfamily 2 of Glutathione S-transferases	NA|220aa|down_4|NZ_CP049140.1_4368790_4369450_-	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism]	NA|831aa|down_5|NZ_CP049140.1_4369690_4372183_+	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed	NA|139aa|down_6|NZ_CP049140.1_4372302_4372719_+	TIGR03319, RNase_Y, ribonuclease Y	NA|137aa|down_7|NZ_CP049140.1_4372793_4373204_+	NA	NA|174aa|down_8|NZ_CP049140.1_4373347_4373869_+	NA	NA|347aa|down_9|NZ_CP049140.1_4373923_4374964_-	TIGR03718, R_switched_Alx, integral membrane protein, TerC family
GCF_011044415.1_ASM1104441v1	NZ_CP049140	Pseudomonas nitroreducens strain HBP1 chromosome, complete genome	4	6509025-6509138	3	CRISPRCasFinder	no		RT,DEDDh,DinG,csa3,PD-DExK,cas3	Orphan	TCATACCTTGCCCTCCAGCTCTTTAGCC	28	0	0	NA	NA	NA	1	1	Orphan	RT,DEDDh,DinG,csa3,PD-DExK,cas3	NA|183aa|up_7|NZ_CP049140.1_6499765_6500314_+,NA|247aa|up_5|NZ_CP049140.1_6501068_6501809_+,NA|192aa|up_3|NZ_CP049140.1_6503024_6503600_+,NA|171aa|up_2|NZ_CP049140.1_6503688_6504201_+,NA	NA|144aa|up_9|NZ_CP049140.1_6498442_6498874_-	pfam14347, DUF4399, Domain of unknown function (DUF4399)	NA|163aa|up_8|NZ_CP049140.1_6499020_6499509_-	pfam04463, DUF523, Protein of unknown function (DUF523)	NA|183aa|up_7|NZ_CP049140.1_6499765_6500314_+	NA	NA|213aa|up_6|NZ_CP049140.1_6500329_6500968_-	COG3751, EGL-9, Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones]	NA|247aa|up_5|NZ_CP049140.1_6501068_6501809_+	NA	NA|313aa|up_4|NZ_CP049140.1_6501962_6502901_-	COG2267, PldB, Lysophospholipase [Lipid metabolism]	NA|192aa|up_3|NZ_CP049140.1_6503024_6503600_+	NA	NA|171aa|up_2|NZ_CP049140.1_6503688_6504201_+	NA	NA|350aa|up_1|NZ_CP049140.1_6504204_6505254_-	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term	NA|796aa|up_0|NZ_CP049140.1_6505361_6507749_+	pfam01804, Penicil_amidase, Penicillin amidase	NA|385aa|down_0|NZ_CP049140.1_6510018_6511173_-	PRK11607, potG, putrescine ABC transporter ATP-binding subunit PotG	NA|365aa|down_1|NZ_CP049140.1_6511324_6512419_-	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold	NA|367aa|down_2|NZ_CP049140.1_6512647_6513748_-	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold	NA|456aa|down_3|NZ_CP049140.1_6513865_6515233_-	PRK07480, PRK07480, putative aminotransferase; Validated	NA|453aa|down_4|NZ_CP049140.1_6515294_6516653_-	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism]	NA|250aa|down_5|NZ_CP049140.1_6516693_6517443_-	COG2071, COG2071, Predicted glutamine amidotransferases [General function prediction only]	NA|460aa|down_6|NZ_CP049140.1_6517721_6519101_+	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism]	NA|354aa|down_7|NZ_CP049140.1_6519345_6520407_+	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold	NA|212aa|down_8|NZ_CP049140.1_6520462_6521098_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|370aa|down_9|NZ_CP049140.1_6521316_6522426_+	PRK13551, PRK13551, agmatine deiminase; Provisional
GCF_011044415.1_ASM1104441v1	NZ_CP049142	Pseudomonas nitroreducens strain HBP1 plasmid pPniHBP1_1, complete sequence	1	182618-182712	1	CRISPRCasFinder	no		csa3,DEDDh	Orphan	CCAGCTTCGCCGCCGGTGTTGCC	23	0	0	NA	NA	NA	1	1	Orphan	RT,DEDDh,DinG,csa3,PD-DExK,cas3	NA|181aa|up_9|NZ_CP049142.1_171452_171995_-,NA|116aa|up_8|NZ_CP049142.1_172154_172502_+,NA|64aa|up_7|NZ_CP049142.1_172559_172751_-,NA|192aa|up_6|NZ_CP049142.1_172809_173385_-,NA|626aa|up_2|NZ_CP049142.1_177038_178916_-,NA|399aa|up_1|NZ_CP049142.1_179405_180602_-,NA|87aa|up_0|NZ_CP049142.1_181010_181271_-,NA|63aa|down_0|NZ_CP049142.1_184423_184612_-,NA|368aa|down_3|NZ_CP049142.1_188320_189424_+,NA|146aa|down_6|NZ_CP049142.1_192492_192930_+,NA|195aa|down_7|NZ_CP049142.1_193040_193625_+,NA|423aa|down_8|NZ_CP049142.1_193621_194890_-,NA|97aa|down_9|NZ_CP049142.1_194902_195193_-	NA|181aa|up_9|NZ_CP049142.1_171452_171995_-	NA	NA|116aa|up_8|NZ_CP049142.1_172154_172502_+	NA	NA|64aa|up_7|NZ_CP049142.1_172559_172751_-	NA	NA|192aa|up_6|NZ_CP049142.1_172809_173385_-	NA	NA|417aa|up_5|NZ_CP049142.1_173584_174835_+	cd06974, TerD_like, Uncharacterized proteins involved in stress response, similar to tellurium resistance terD	NA|186aa|up_4|NZ_CP049142.1_174925_175483_+	cd00085, HNHc, HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins	NA|363aa|up_3|NZ_CP049142.1_175859_176948_-	pfam01987, AIM24, Mitochondrial biogenesis AIM24	NA|626aa|up_2|NZ_CP049142.1_177038_178916_-	NA	NA|399aa|up_1|NZ_CP049142.1_179405_180602_-	NA	NA|87aa|up_0|NZ_CP049142.1_181010_181271_-	NA	NA|63aa|down_0|NZ_CP049142.1_184423_184612_-	NA	NA|135aa|down_1|NZ_CP049142.1_184762_185167_+	cd00156, REC, phosphoacceptor receiver (REC) domain of response regulators (RRs) and pseudo response regulators (PRRs)	NA|442aa|down_2|NZ_CP049142.1_185273_186599_+	TIGR02224, Tyrosine_recombinase_XerC, tyrosine recombinase XerC	NA|368aa|down_3|NZ_CP049142.1_188320_189424_+	NA	NA|388aa|down_4|NZ_CP049142.1_189462_190626_-	COG4461, LprI, Uncharacterized protein conserved in bacteria, putative lipoprotein [Function unknown]	NA|340aa|down_5|NZ_CP049142.1_190783_191803_-	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|146aa|down_6|NZ_CP049142.1_192492_192930_+	NA	NA|195aa|down_7|NZ_CP049142.1_193040_193625_+	NA	NA|423aa|down_8|NZ_CP049142.1_193621_194890_-	NA	NA|97aa|down_9|NZ_CP049142.1_194902_195193_-	NA
GCF_011044415.1_ASM1104441v1	NZ_CP049142	Pseudomonas nitroreducens strain HBP1 plasmid pPniHBP1_1, complete sequence	2	406329-406462	2	CRISPRCasFinder	no		csa3,DEDDh	Orphan	ATTAGCTGGCCAGCTAAACTAGCG	24	0	0	NA	NA	NA	2	2	Orphan	RT,DEDDh,DinG,csa3,PD-DExK,cas3	NA|180aa|up_7|NZ_CP049142.1_401396_401936_+,NA|146aa|up_6|NZ_CP049142.1_402005_402443_+,NA|176aa|up_5|NZ_CP049142.1_402934_403462_+,NA|83aa|up_4|NZ_CP049142.1_403571_403820_-,NA|147aa|up_3|NZ_CP049142.1_404009_404450_+,NA|114aa|up_2|NZ_CP049142.1_404906_405248_+,NA|186aa|up_1|NZ_CP049142.1_405244_405802_+,NA|143aa|up_0|NZ_CP049142.1_405842_406271_+,NA|90aa|down_2|NZ_CP049142.1_408525_408795_+,NA|213aa|down_4|NZ_CP049142.1_409676_410315_+,NA|111aa|down_5|NZ_CP049142.1_410396_410729_+,NA|68aa|down_7|NZ_CP049142.1_411870_412074_+	NA|220aa|up_9|NZ_CP049142.1_399807_400467_+	PRK10510, PRK10510, OmpA family lipoprotein	NA|194aa|up_8|NZ_CP049142.1_400510_401092_-	pfam05951, Peptidase_M15_2, Bacterial protein of unknown function (DUF882)	NA|180aa|up_7|NZ_CP049142.1_401396_401936_+	NA	NA|146aa|up_6|NZ_CP049142.1_402005_402443_+	NA	NA|176aa|up_5|NZ_CP049142.1_402934_403462_+	NA	NA|83aa|up_4|NZ_CP049142.1_403571_403820_-	NA	NA|147aa|up_3|NZ_CP049142.1_404009_404450_+	NA	NA|114aa|up_2|NZ_CP049142.1_404906_405248_+	NA	NA|186aa|up_1|NZ_CP049142.1_405244_405802_+	NA	NA|143aa|up_0|NZ_CP049142.1_405842_406271_+	NA	NA|354aa|down_0|NZ_CP049142.1_406527_407589_+	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|305aa|down_1|NZ_CP049142.1_407576_408491_+	cd13665, PBP2_TRAP_Dctp3_4, Periplasmic substrate-binding component of TRAP-type C4-dicarboxylate transport system DctP3 and DctP4; the type 2 periplasmic-binding protein fold	NA|90aa|down_2|NZ_CP049142.1_408525_408795_+	NA	NA|106aa|down_3|NZ_CP049142.1_409006_409324_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|213aa|down_4|NZ_CP049142.1_409676_410315_+	NA	NA|111aa|down_5|NZ_CP049142.1_410396_410729_+	NA	NA|355aa|down_6|NZ_CP049142.1_410728_411793_+	COG3904, COG3904, Predicted periplasmic protein [Function unknown]	NA|68aa|down_7|NZ_CP049142.1_411870_412074_+	NA	NA|79aa|down_8|NZ_CP049142.1_412083_412320_+	PRK00304, PRK00304, hypothetical protein; Provisional	NA|297aa|down_9|NZ_CP049142.1_412899_413790_-	cd08474, PBP2_CrgA_like_5, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold
