The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP049015	Citrobacter freundii ATCC 8090 = MTCC 1658 = NBRC 12681 strain ATCC 8090 chromosome, complete genome	4957773	1280818	1342790	4957773	head,integrase,plate,protease,capsid,tRNA,terminase,portal,tail	Enterobacteria_phage(52.5%)	70	1275688:1275704	1338885:1338901
1275688:1275704	attL	CGCTTATCGGGCCTACG	NA	NA	NA	NA
WP_003021794.1|1280818_1281298_-|tRNA	Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK	tRNA	NA	NA	NA	NA
WP_003835900.1|1281500_1282295_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003835898.1|1282395_1284897_-	copper-exporting P-type ATPase CopA	NA	A0A218MNH6	uncultured_virus	38.3	2.0e-116
WP_003835896.1|1285152_1285854_+	hypothetical protein	NA	A0A218M4H5	Erwinia_phage	42.3	1.4e-35
WP_003835893.1|1285890_1286142_-	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA	NA
WP_042269054.1|1286187_1287318_-	phage late control D family protein	NA	A0A0A7NQ97	Enterobacteria_phage	75.9	4.6e-153
WP_003835888.1|1287470_1288658_+|tail	phage tail sheath family protein	tail	A0A0A7NV69	Enterobacteria_phage	81.8	1.1e-186
WP_003835886.1|1288658_1289171_+|tail	phage major tail tube protein	tail	A0A0A7NPV8	Enterobacteria_phage	64.1	7.9e-60
WP_003835883.1|1289220_1289556_+	hypothetical protein	NA	A0A0A7NPZ0	Enterobacteria_phage	57.5	2.1e-21
WP_032941227.1|1289561_1289717_+|tail	GpE family phage tail protein	tail	A0A0A7NQ96	Enterobacteria_phage	64.7	3.1e-12
WP_003835879.1|1289703_1292682_+|tail	phage tail tape measure protein	tail	A0A0A7NRZ9	Enterobacteria_phage	53.1	3.0e-268
WP_003835877.1|1292698_1293187_+|tail	phage tail protein	tail	A0A0A7NV65	Enterobacteria_phage	79.5	2.1e-70
WP_100225764.1|1293381_1293810_-|tail	phage tail protein	tail	A0A0M4S6V4	Salmonella_phage	77.6	2.8e-26
WP_003835872.1|1295262_1295880_-|tail	phage tail protein I	tail	A0A1J0I2I4	Salmonella_phage	61.7	3.1e-66
WP_003835871.1|1295872_1296769_-|plate	baseplate assembly protein J	plate	A0A0A7NPY5	Enterobacteria_phage	66.8	2.1e-100
WP_003835869.1|1296755_1297124_-	GPW/gp25 family protein	NA	A0A0A7NQ90	Enterobacteria_phage	68.1	3.6e-38
WP_003835867.1|1297120_1297702_-|plate	phage baseplate assembly protein V	plate	A0A0A7NRZ3	Enterobacteria_phage	70.7	3.9e-71
WP_003835865.1|1297698_1298337_-	phage virion morphogenesis protein	NA	A0A0A7NV60	Enterobacteria_phage	58.1	3.2e-66
WP_003835863.1|1298333_1298798_-|tail	phage tail protein	tail	A0A0A7NPU6	Enterobacteria_phage	68.7	1.9e-60
WP_003835856.1|1299008_1299446_-	DUF2570 domain-containing protein	NA	A0A0A7NPY2	Enterobacteria_phage	31.9	9.6e-06
WP_032941223.1|1299442_1299988_-	lysozyme	NA	A0A1S5Q8G1	Aeromonas_phage	41.8	5.9e-29
WP_003835852.1|1299971_1300274_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003835851.1|1300264_1300465_-|tail	tail X family protein	tail	A0A0A7NV57	Enterobacteria_phage	71.2	1.1e-20
WP_003835850.1|1300464_1300992_-|head	head completion/stabilization protein	head	A0A0A7NPU2	Enterobacteria_phage	61.7	9.6e-53
WP_003835849.1|1301098_1301917_-|terminase	phage terminase endonuclease small subunit M	terminase	A0A0A7NPX9	Enterobacteria_phage	63.5	1.6e-86
WP_003835848.1|1301968_1303042_-|capsid	phage major capsid protein, P2 family	capsid	A0A0A7NQ82	Enterobacteria_phage	70.0	3.6e-139
WP_003835847.1|1303064_1303901_-|capsid	GPO family capsid scaffolding protein	capsid	A0A0A7NRY7	Enterobacteria_phage	64.7	1.3e-96
WP_003835846.1|1304058_1305792_+	helix-turn-helix domain-containing protein	NA	A0A0A7NV54	Enterobacteria_phage	75.6	4.9e-263
WP_003835845.1|1305791_1306835_+|portal	phage portal protein	portal	A0A0A7NPT9	Enterobacteria_phage	77.8	3.3e-161
WP_003835844.1|1307476_1307974_+	DUF4760 domain-containing protein	NA	NA	NA	NA	NA
WP_032941222.1|1308014_1308695_-	DNA adenine methylase	NA	A0A0M4S5U3	Salmonella_phage	79.6	2.2e-102
WP_042269189.1|1308797_1309016_-	hypothetical protein	NA	A0A219YCH5	Aeromonas_phage	60.0	2.0e-12
WP_003835840.1|1309321_1311961_-	replication endonuclease	NA	A0A0M4RTM8	Salmonella_phage	51.9	2.2e-193
WP_003835837.1|1311953_1312961_-	DNA cytosine methyltransferase	NA	Q6J1P4	Burkholderia_virus	55.8	9.0e-100
WP_016155221.1|1312971_1313145_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003835835.1|1313141_1313348_-	hypothetical protein	NA	A0A2R2Z313	Escherichia_phage	77.4	1.4e-20
WP_003835833.1|1313347_1314313_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A0M4QWR0	Salmonella_phage	52.3	2.7e-85
WP_003835831.1|1314323_1314875_-	3'-5' exoribonuclease	NA	A0A192Y6E0	Salmonella_phage	28.8	1.4e-14
WP_003835830.1|1314871_1315096_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003835828.1|1315163_1315436_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003835825.1|1315454_1315682_-	DUF2724 domain-containing protein	NA	A0A0M4S6M9	Salmonella_phage	69.3	2.8e-25
WP_032941215.1|1315694_1315874_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003835823.1|1315886_1316144_-	DUF4761 family protein	NA	A0A0M5M1I3	Salmonella_phage	49.2	1.9e-09
WP_003835821.1|1316157_1316493_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003835818.1|1316742_1317042_+	helix-turn-helix transcriptional regulator	NA	Q1JS29	Enterobacteria_phage	56.6	1.1e-26
WP_003835817.1|1317111_1318134_+|integrase	tyrosine-type recombinase/integrase	integrase	Q83VS6	Escherichia_phage	52.0	2.4e-92
WP_003835815.1|1318287_1319058_-	heme ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	27.9	1.2e-14
WP_123924889.1|1319054_1320059_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003021809.1|1320098_1320722_-	anaerobilin reductase	NA	NA	NA	NA	NA
WP_003835812.1|1320721_1321216_-	heme utilization cystosolic carrier protein HutX	NA	NA	NA	NA	NA
WP_003835810.1|1321228_1322566_-	heme anaerobic degradation radical SAM methyltransferase ChuW/HutW	NA	NA	NA	NA	NA
WP_003835809.1|1322584_1323409_-	hemin ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003835807.1|1323411_1325556_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003021822.1|1325845_1326256_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003835804.1|1326252_1326969_-	DUF3142 domain-containing protein	NA	NA	NA	NA	NA
WP_003835801.1|1326938_1329083_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003021832.1|1329102_1329561_-	NfeD family protein	NA	NA	NA	NA	NA
WP_003021835.1|1329557_1330475_-	SPFH/Band 7/PHB domain protein	NA	NA	NA	NA	NA
WP_003835797.1|1330609_1331287_+	iron ABC transporter ATP-binding protein FetA	NA	G3M9Y6	Bacillus_virus	35.2	3.1e-27
WP_003835795.1|1331273_1332053_+	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA	NA
WP_003835793.1|1332131_1332986_-	co-chaperone YbbN	NA	NA	NA	NA	NA
WP_003835790.1|1333044_1333815_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_032932667.1|1333843_1334467_-|protease	multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1	protease	NA	NA	NA	NA
WP_003021853.1|1334437_1335124_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.2	7.9e-31
WP_003835788.1|1335120_1337535_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003021860.1|1337723_1338857_+	porin	NA	NA	NA	NA	NA
WP_003835785.1|1339132_1339963_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
1338885:1338901	attR	CGCTTATCGGGCCTACG	NA	NA	NA	NA
WP_003835783.1|1340026_1341043_+	virulence-associated ABC transporter ATP-binding protein SfbB	NA	G9BWD6	Planktothrix_phage	38.6	1.5e-33
WP_003021866.1|1341035_1341695_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003835781.1|1341695_1342790_-|tRNA	tRNA 2-selenouridine(34) synthase MnmH	tRNA	NA	NA	NA	NA
>prophage 2
NZ_CP049015	Citrobacter freundii ATCC 8090 = MTCC 1658 = NBRC 12681 strain ATCC 8090 chromosome, complete genome	4957773	2057363	2063590	4957773		Klebsiella_phage(28.57%)	11	NA	NA
WP_003840845.1|2057363_2057606_-	DinI family protein	NA	Q6UAW0	Klebsiella_phage	80.5	1.8e-30
WP_016150075.1|2057925_2058315_+	hypothetical protein	NA	Q1MVE7	Enterobacteria_phage	71.3	5.6e-50
WP_003840846.1|2058644_2059046_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003840847.1|2059344_2059890_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003840848.1|2059953_2060184_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003840849.1|2060578_2060791_+	isocitrate dehydrogenase	NA	Q77Z09	Phage_21	96.3	2.4e-23
WP_003030767.1|2060926_2061436_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003840850.1|2061610_2061853_-	DinI family protein	NA	Q6UAW0	Klebsiella_phage	77.9	1.5e-29
WP_071524325.1|2061931_2062153_+	DNA polymerase V	NA	A0A222YZE2	Escherichia_phage	83.1	3.7e-22
WP_100225774.1|2062376_2062589_+	isocitrate dehydrogenase	NA	Q77Z09	Phage_21	90.7	3.5e-22
WP_003840852.1|2063104_2063590_+	outer membrane beta-barrel protein	NA	A0A1B0VBR9	Salmonella_phage	34.9	1.7e-08
>prophage 3
NZ_CP049015	Citrobacter freundii ATCC 8090 = MTCC 1658 = NBRC 12681 strain ATCC 8090 chromosome, complete genome	4957773	2161752	2171790	4957773	tRNA	Tupanvirus(14.29%)	10	NA	NA
WP_003832580.1|2161752_2162736_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2K9L3A8	Tupanvirus	38.5	1.4e-33
WP_003836646.1|2162751_2165139_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003030571.1|2165143_2165443_+	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	40.0	7.2e-13
WP_003832584.1|2165596_2166577_+	vitamin B12 ABC transporter permease BtuC	NA	A0A2H4IY97	uncultured_Caudovirales_phage	24.8	6.7e-15
WP_003030569.1|2166637_2167189_+	glutathione peroxidase	NA	NA	NA	NA	NA
WP_003836645.1|2167188_2167938_+	vitamin B12 ABC transporter ATP-binding protein BtuD	NA	A0A2R8FG22	Brazilian_cedratvirus	30.3	7.1e-09
WP_003836644.1|2168015_2168480_+	lipoprotein nlpC	NA	A0A1V0DZX6	Clostridioides_phage	38.2	3.5e-14
WP_003836643.1|2168796_2169510_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003836642.1|2169571_2171014_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	35.0	8.5e-51
WP_003836641.1|2171010_2171790_-	heme ABC transporter ATP-binding protein	NA	A0A285PWH2	Cedratvirus	26.7	7.9e-11
>prophage 4
NZ_CP049015	Citrobacter freundii ATCC 8090 = MTCC 1658 = NBRC 12681 strain ATCC 8090 chromosome, complete genome	4957773	2545604	2552257	4957773	transposase	Salmonella_phage(33.33%)	6	NA	NA
WP_071524266.1|2545604_2546798_-	translesion error-prone DNA polymerase V subunit UmuC	NA	I6RSM4	Salmonella_phage	77.9	2.7e-180
WP_003836068.1|2548202_2549465_-	translesion error-prone DNA polymerase V subunit UmuC	NA	I6RSM4	Salmonella_phage	70.1	2.1e-170
WP_032941259.1|2549467_2549818_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	50.9	2.1e-24
WP_085951607.1|2549814_2550983_-|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	89.5	1.4e-165
WP_003020321.1|2551134_2551554_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	58.5	3.9e-33
WP_003020322.1|2551726_2552257_-	cytochrome b561	NA	A0A0U2QLA7	Escherichia_phage	43.9	9.1e-19
>prophage 5
NZ_CP049015	Citrobacter freundii ATCC 8090 = MTCC 1658 = NBRC 12681 strain ATCC 8090 chromosome, complete genome	4957773	2793189	2906456	4957773	head,integrase,tail,transposase,holin,capsid,tRNA,terminase,portal,protease	Enterobacteria_phage(29.89%)	145	2823838:2823853	2915515:2915530
WP_000019441.1|2793189_2794170_+|transposase	IS5-like element ISKpn26 family transposase	transposase	A0A077SK28	Escherichia_phage	99.1	2.3e-185
WP_003841991.1|2794965_2795250_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003034977.1|2795324_2795468_-	PhoP/PhoQ regulator MgrB	NA	NA	NA	NA	NA
WP_003841988.1|2795632_2795872_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003833778.1|2795986_2796778_-	DNA-binding transcriptional regulator KdgR	NA	NA	NA	NA	NA
WP_003841986.1|2796952_2798326_+	MFS transporter	NA	NA	NA	NA	NA
WP_003034964.1|2798372_2799254_-|protease	protease HtpX	protease	NA	NA	NA	NA
WP_003034960.1|2799446_2801495_-	carboxy terminal-processing peptidase	NA	A0A0R6PIZ1	Moraxella_phage	33.7	1.2e-87
WP_003034957.1|2801514_2802201_-	RNA chaperone ProQ	NA	NA	NA	NA	NA
WP_003034953.1|2802297_2802795_-	GAF domain-containing protein	NA	NA	NA	NA	NA
WP_003841983.1|2802923_2804207_+	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA	NA
WP_003034947.1|2804175_2806809_+	PqiB family protein	NA	NA	NA	NA	NA
WP_071524347.1|2806888_2808310_+	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA	NA
WP_029139506.1|2808410_2808647_+	DUF1480 family protein	NA	NA	NA	NA	NA
WP_003841978.1|2808749_2808941_+	YebW family protein	NA	NA	NA	NA	NA
WP_003034937.1|2808941_2809583_-	protein-serine/threonine phosphatase	NA	A0A222YWF0	Escherichia_phage	50.5	8.7e-56
WP_003841974.1|2810275_2811835_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003841970.1|2812512_2813772_-|portal	phage portal protein	portal	Q6UAX8	Klebsiella_phage	89.3	1.7e-220
WP_003841969.1|2813771_2813951_-	hypothetical protein	NA	Q6UAX9	Klebsiella_phage	74.6	3.9e-14
WP_003841968.1|2813944_2815660_-|terminase	terminase large subunit	terminase	Q6UAY0	Klebsiella_phage	83.2	6.1e-290
WP_032941333.1|2815696_2816131_-|terminase	P27 family phage terminase small subunit	terminase	Q6UAY1	Klebsiella_phage	89.6	2.3e-68
WP_003841965.1|2816358_2816874_+	hypothetical protein	NA	A0A077K9U2	Edwardsiella_phage	48.2	1.4e-32
WP_003841963.1|2817009_2817372_-	HNH endonuclease	NA	Q6UAS2	Klebsiella_phage	85.8	1.3e-56
WP_003841960.1|2817641_2817815_-	addiction module toxin, GnsA/GnsB family	NA	NA	NA	NA	NA
WP_032941334.1|2818021_2818252_-	hypothetical protein	NA	NA	NA	NA	NA
WP_072144007.1|2818325_2818514_-	cold-shock protein	NA	NA	NA	NA	NA
WP_003841958.1|2818524_2818737_-	cold shock protein CspG	NA	A0A1W6JNX5	Morganella_phage	74.3	2.1e-22
WP_050499177.1|2819111_2819657_-	DUF2514 domain-containing protein	NA	A0A291LBG9	Klebsiella_phage	46.2	1.0e-12
WP_032941335.1|2819635_2820184_-	lysozyme	NA	K7PM52	Enterobacteria_phage	94.0	2.1e-98
WP_003841952.1|2820155_2820434_-	hypothetical protein	NA	K7P6H9	Enterobacteria_phage	98.9	1.5e-44
WP_003841950.1|2820587_2820776_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003841948.1|2822205_2822421_-	RNA chaperone/antiterminator CspA	NA	A0A1W6JNX5	Morganella_phage	80.6	5.9e-25
WP_003841946.1|2822717_2822930_+	cold shock-like protein CspF	NA	NA	NA	NA	NA
WP_042270662.1|2823216_2823648_-	antitermination protein	NA	Q8W638	Enterobacteria_phage	59.2	3.9e-36
WP_003841943.1|2823662_2824355_-	DUF968 domain-containing protein	NA	A0A291AWV9	Escherichia_phage	42.0	1.4e-64
2823838:2823853	attL	TGGCCAATCAGGTGAT	NA	NA	NA	NA
WP_032941336.1|2824351_2824711_-	RusA family crossover junction endodeoxyribonuclease	NA	G8C7V6	Escherichia_phage	64.4	1.4e-42
WP_057108923.1|2824713_2824914_-	hypothetical protein	NA	H6WRY8	Salmonella_phage	69.2	3.3e-22
WP_003841938.1|2824919_2825519_-	DUF1367 family protein	NA	K7PKS6	Enterobacteria_phage	95.5	1.1e-105
WP_071524344.1|2825553_2825802_-	hypothetical protein	NA	K7PHG9	Enterobacteria_phage	91.5	2.2e-39
WP_003841935.1|2825912_2826146_-	DinI family protein	NA	K7PM44	Enterobacteria_phage	71.4	8.9e-27
WP_003841934.1|2826421_2826787_-	hypothetical protein	NA	NA	NA	NA	NA
WP_032941338.1|2827701_2828088_+	helix-turn-helix domain-containing protein	NA	A0A0M4R5D1	Salmonella_phage	85.7	2.9e-54
WP_003841927.1|2828238_2828712_+	hypothetical protein	NA	K7PLT9	Enterobacteria_phage	59.1	3.0e-53
WP_003841925.1|2828708_2829641_+	hypothetical protein	NA	K7PGT0	Enterobacteria_phage	53.2	1.3e-87
WP_032941339.1|2829673_2829880_-	hypothetical protein	NA	K7P7I0	Enterobacteria_phage	66.2	1.4e-15
WP_155267880.1|2830095_2830242_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003841921.1|2830240_2830447_+	hypothetical protein	NA	K7PM31	Enterobacteria_phage	98.5	4.3e-33
WP_003841919.1|2830458_2830620_+	hypothetical protein	NA	K7PGY4	Enterobacteria_phage	98.1	6.3e-24
WP_003841917.1|2830706_2830994_+	hypothetical protein	NA	H6WRX2	Salmonella_phage	77.9	6.2e-38
WP_032941340.1|2831120_2831873_+	hypothetical protein	NA	S4TNL0	Salmonella_phage	59.9	8.0e-77
WP_085951607.1|2831865_2833034_-|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	89.5	1.4e-165
WP_003841644.1|2834761_2835106_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003841645.1|2835098_2835302_+	hypothetical protein	NA	A0A1B0VN94	Pseudomonas_phage	66.7	1.7e-10
WP_003841647.1|2835288_2835531_+	DUF4060 family protein	NA	K7PHF4	Enterobacteria_phage	89.9	1.3e-33
WP_003841650.1|2835595_2835868_+	excisionase	NA	A0A2H4J5E1	uncultured_Caudovirales_phage	63.3	3.2e-28
WP_003841651.1|2835836_2836922_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	69.0	9.6e-148
WP_003034934.1|2837258_2837597_-	YebY family protein	NA	NA	NA	NA	NA
WP_003034931.1|2837617_2838490_-	copper homeostasis membrane protein CopD	NA	NA	NA	NA	NA
WP_003841654.1|2838493_2838868_-	CopC domain-containing protein YobA	NA	NA	NA	NA	NA
WP_003034925.1|2839011_2839242_+	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	60.3	1.0e-14
WP_003841657.1|2839348_2840005_+	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA	NA
WP_003841659.1|2840028_2840691_+	exodeoxyribonuclease X	NA	Q6UAU3	Klebsiella_phage	30.6	9.1e-08
WP_032941242.1|2840681_2842760_-	oligopeptidase B	NA	NA	NA	NA	NA
WP_003841661.1|2842822_2843482_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003841664.1|2843576_2843939_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003034906.1|2844060_2844351_-	DNA damage-inducible protein YebG	NA	NA	NA	NA	NA
WP_003841666.1|2844482_2845661_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003034901.1|2845727_2846369_-	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA	NA
WP_003841668.1|2846403_2848215_-	phosphogluconate dehydratase	NA	NA	NA	NA	NA
WP_003841670.1|2848448_2849924_-	glucose-6-phosphate dehydrogenase	NA	H6WFS4	Cyanophage	37.1	6.4e-78
WP_003034893.1|2850291_2851161_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003034890.1|2851279_2852722_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_003841672.1|2852764_2853736_-	lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase	NA	NA	NA	NA	NA
WP_003034883.1|2853855_2855175_-	murein DD-endopeptidase MepM	NA	A8ATH6	Listeria_phage	36.8	1.2e-14
WP_003841677.1|2855190_2856135_-	zinc ABC transporter substrate-binding protein ZnuA	NA	NA	NA	NA	NA
WP_003034877.1|2856213_2856969_+	zinc ABC transporter ATP-binding protein ZnuC	NA	G3M9Y6	Bacillus_virus	28.3	6.5e-18
WP_003034874.1|2856965_2857751_+	zinc ABC transporter permease subunit ZnuB	NA	NA	NA	NA	NA
WP_003841680.1|2857829_2858840_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.4	1.6e-08
WP_003034869.1|2858848_2859460_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_003034867.1|2859540_2860062_-	crossover junction endodeoxyribonuclease RuvC	NA	G3MA90	Bacillus_virus	35.1	2.6e-10
WP_003034865.1|2860096_2860840_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003034863.1|2860868_2861312_-	dihydroneopterin triphosphate diphosphatase	NA	NA	NA	NA	NA
WP_003034862.1|2861313_2863086_-|tRNA	aspartate--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003841685.1|2863352_2863919_+	hydrolase	NA	NA	NA	NA	NA
WP_000497460.1|2864272_2864512_+	DinI family protein	NA	K7PKR6	Enterobacteria_phage	100.0	7.4e-37
WP_003841688.1|2864597_2865008_-	hemerythrin domain-containing protein	NA	NA	NA	NA	NA
WP_003841689.1|2865199_2865532_-	hypothetical protein	NA	K7PGV5	Enterobacterial_phage	54.2	2.3e-20
WP_003841691.1|2865610_2865853_+	DinI family protein	NA	Q6UAW0	Klebsiella_phage	79.2	1.2e-29
WP_003841693.1|2865987_2867277_-	hypothetical protein	NA	A0A1V0E5M2	Salmonella_phage	56.0	2.5e-118
WP_003841695.1|2867286_2868231_-	hypothetical protein	NA	H6WRW5	Salmonella_phage	67.4	4.3e-120
WP_003841697.1|2868232_2870944_-	DUF1983 domain-containing protein	NA	S4TTF5	Salmonella_phage	94.7	0.0e+00
WP_003841698.1|2870943_2871342_-	hypothetical protein	NA	S4TR39	Salmonella_phage	93.9	1.5e-69
WP_003841700.1|2871348_2871933_-	hypothetical protein	NA	S4TND4	Salmonella_phage	96.4	1.0e-103
WP_003841701.1|2871932_2872526_-	hypothetical protein	NA	S4TSP7	Salmonella_phage	96.4	5.3e-108
WP_003841703.1|2872691_2872916_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003841705.1|2872904_2873264_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003841707.1|2873309_2875784_-|tail	phage tail tape measure protein	tail	K7PM62	Enterobacteria_phage	59.8	2.1e-235
WP_003841708.1|2875842_2876220_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003841709.1|2876578_2876959_-	hypothetical protein	NA	K7PJU9	Enterobacteria_phage	76.6	1.0e-43
WP_003841711.1|2877011_2877503_-	hypothetical protein	NA	A0A286S1Q8	Klebsiella_phage	70.0	1.1e-61
WP_003841715.1|2877562_2877928_-	DUF3168 domain-containing protein	NA	A0A286S1R1	Klebsiella_phage	70.2	1.3e-48
WP_003841717.1|2877924_2878464_-	HK97 gp10 family phage protein	NA	K7PM60	Enterobacteria_phage	86.0	1.2e-79
WP_003841719.1|2878456_2878789_-|head	phage head closure protein	head	K7PH08	Enterobacteria_phage	90.0	7.1e-54
WP_003841720.1|2878790_2879003_-	hypothetical protein	NA	K7PGR0	Enterobacteria_phage	68.6	7.9e-14
WP_003841722.1|2879072_2879390_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A1W6JNZ5	Morganella_phage	52.9	1.8e-22
WP_003841724.1|2879467_2880706_-|capsid	phage major capsid protein	capsid	A0A1W6JP20	Morganella_phage	68.0	2.1e-154
WP_003841726.1|2880715_2881315_-|head,protease	HK97 family phage prohead protease	head,protease	Q8SBH9	Shigella_phage	83.0	1.6e-91
WP_003841728.1|2881307_2882534_-|portal	phage portal protein	portal	Q8SBI0	Shigella_phage	86.5	8.1e-212
WP_162138603.1|2882523_2882673_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003841731.1|2882681_2884439_-|terminase	terminase large subunit	terminase	A0A1B5FP96	Escherichia_phage	90.7	0.0e+00
WP_003841734.1|2884438_2884936_-|terminase	phage terminase small subunit P27 family	terminase	K7PHI2	Enterobacteria_phage	73.9	9.7e-63
WP_003841739.1|2885092_2885443_-	HNH endonuclease	NA	K7PHK9	Enterobacteria_phage	79.3	6.0e-51
WP_155267876.1|2885430_2885646_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003841743.1|2885801_2886035_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003839237.1|2886398_2886602_-	hypothetical protein	NA	A0A1W6JPG4	Morganella_phage	62.9	2.0e-06
WP_003839236.1|2887075_2887591_-	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
WP_008322460.1|2887587_2888136_-	lysozyme	NA	K7PM52	Enterobacteria_phage	96.2	3.8e-100
WP_001568784.1|2888107_2888386_-|holin	holin	holin	K7PGZ9	Enterobacteria_phage	97.8	5.1e-45
WP_001446083.1|2888830_2889364_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003839229.1|2889479_2890166_-	Rha family transcriptional regulator	NA	A0A192Y918	Salmonella_phage	78.5	2.8e-100
WP_003839227.1|2890435_2891125_-	phage antiterminator protein	NA	NA	NA	NA	NA
WP_003839225.1|2891146_2892142_-	DUF968 domain-containing protein	NA	A0A291AWV9	Escherichia_phage	69.6	1.5e-142
WP_003839223.1|2892138_2892822_-	phage regulatory protein/antirepressor Ant	NA	G0ZND1	Cronobacter_phage	60.4	7.1e-64
WP_003839221.1|2892835_2893222_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A192Y8N5	Salmonella_phage	89.1	2.4e-61
WP_003839220.1|2893336_2894230_-	phage N-6-adenine-methyltransferase	NA	Q8HA94	Salmonella_phage	78.2	3.8e-134
WP_003839217.1|2894226_2895078_-	GntR family transcriptional regulator	NA	U5P0A0	Shigella_phage	87.8	1.9e-34
WP_003034732.1|2895067_2895247_-	DUF4222 domain-containing protein	NA	S5M7S5	Escherichia_phage	73.1	3.0e-14
WP_003839214.1|2895419_2895971_-	hypothetical protein	NA	A0A1C9II13	Salmonella_phage	67.2	8.8e-65
WP_003839211.1|2895999_2896242_-	antirepressor protein Cro	NA	K7PHA1	Enterobacteria_phage	67.1	1.1e-19
WP_003839209.1|2896341_2897052_+	helix-turn-helix transcriptional regulator	NA	G8C7U1	Escherichia_phage	66.5	4.4e-77
WP_003839207.1|2897127_2897334_-	hypothetical protein	NA	K7P7I0	Enterobacteria_phage	70.6	1.1e-17
WP_001515608.1|2897986_2898358_+	hypothetical protein	NA	Q8HAA1	Salmonella_phage	92.7	1.1e-58
WP_003839202.1|2898414_2899242_+	YfdQ family protein	NA	Q8HAA2	Salmonella_phage	90.9	3.3e-140
WP_003839201.1|2899370_2899910_+	hypothetical protein	NA	A0A192Y8M4	Salmonella_phage	69.3	5.9e-66
WP_001253786.1|2899897_2900074_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003839198.1|2900070_2900325_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003839196.1|2900321_2900813_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003839194.1|2900809_2901487_+	ead/Ea22-like family protein	NA	S4TNP2	Salmonella_phage	76.5	8.7e-14
WP_003839192.1|2901491_2901692_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003839190.1|2901695_2902253_+	hypothetical protein	NA	A0A192Y6F5	Salmonella_phage	73.2	1.2e-29
WP_003839185.1|2902863_2903100_+	excisionase family protein	NA	Q8W657	Enterobacteria_phage	89.7	4.6e-39
WP_003839182.1|2903158_2904472_+|integrase	site-specific integrase	integrase	Q8W658	Enterobacteria_phage	89.9	2.5e-235
WP_050499175.1|2904450_2905224_+	DUF72 domain-containing protein	NA	Q859D1	Escherichia_coli_phage	79.5	1.2e-56
WP_003034689.1|2905276_2905672_+	membrane protein	NA	NA	NA	NA	NA
WP_003034686.1|2905712_2906456_+	carboxy-S-adenosyl-L-methionine synthase CmoA	NA	F5B419	Synechococcus_phage	31.3	3.2e-25
2915515:2915530	attR	TGGCCAATCAGGTGAT	NA	NA	NA	NA
>prophage 6
NZ_CP049015	Citrobacter freundii ATCC 8090 = MTCC 1658 = NBRC 12681 strain ATCC 8090 chromosome, complete genome	4957773	3071867	3080089	4957773		Enterobacteria_phage(42.86%)	8	NA	NA
WP_003842215.1|3071867_3072971_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	E5ES42	Bathycoccus_sp._RCC1105_virus	30.9	5.9e-36
WP_003842218.1|3072987_3073383_-	WxcM-like domain-containing protein	NA	NA	NA	NA	NA
WP_032941356.1|3073379_3073931_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	50.0	3.5e-45
WP_003841824.1|3074345_3075224_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	63.4	2.3e-107
WP_003841822.1|3075277_3076177_-	dTDP-4-dehydrorhamnose reductase	NA	A0A140G5S3	Enterobacteria_phage	36.3	2.1e-31
WP_003841820.1|3076176_3077262_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.1	6.3e-99
WP_003841818.1|3077635_3078529_-	UTP--glucose-1-phosphate uridylyltransferase GalF	NA	A0A127AW70	Bacillus_phage	39.9	4.3e-45
WP_003841816.1|3078694_3080089_-	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	35.0	6.1e-22
>prophage 7
NZ_CP049015	Citrobacter freundii ATCC 8090 = MTCC 1658 = NBRC 12681 strain ATCC 8090 chromosome, complete genome	4957773	3174218	3182637	4957773	tRNA	Enterobacteria_phage(66.67%)	9	NA	NA
WP_003027344.1|3174218_3176252_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	4.0e-54
WP_003840158.1|3176458_3176917_+	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	68.0	5.1e-50
WP_003027346.1|3176959_3177430_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	76.9	4.9e-64
WP_003840155.1|3177476_3178196_-	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_003027348.1|3178192_3179878_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.6	6.7e-281
WP_003027351.1|3180103_3180835_+	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	93.5	1.0e-105
WP_003027354.1|3180886_3180994_+	protein YohO	NA	NA	NA	NA	NA
WP_003840153.1|3180974_3181706_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003840151.1|3181689_3182637_-	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	25.8	2.0e-08
>prophage 8
NZ_CP049015	Citrobacter freundii ATCC 8090 = MTCC 1658 = NBRC 12681 strain ATCC 8090 chromosome, complete genome	4957773	4219217	4258180	4957773	head,integrase,capsid,tRNA,terminase,portal,tail	Cronobacter_phage(73.53%)	43	4241034:4241048	4263316:4263330
WP_003024694.1|4219217_4220231_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	59.8	7.4e-110
WP_001144069.1|4220467_4220683_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003024697.1|4220920_4222666_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	38.8	8.4e-77
WP_003024699.1|4223025_4224873_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	33.7	8.4e-35
WP_003838092.1|4225034_4226084_+	YncE family protein	NA	NA	NA	NA	NA
WP_003838090.1|4226094_4228092_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	27.2	1.9e-08
WP_003838087.1|4228122_4228629_-	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA	NA
WP_003838085.1|4229139_4229922_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003838082.1|4230466_4232167_-	hypothetical protein	NA	F1BUJ7	Cronobacter_phage	78.3	2.4e-217
WP_003838080.1|4232169_4232715_-	hypothetical protein	NA	F1BUJ9	Cronobacter_phage	73.1	3.0e-65
WP_003838079.1|4232686_4233412_-	hypothetical protein	NA	F1BUK1	Cronobacter_phage	50.6	2.9e-55
WP_003838077.1|4233401_4233860_-|tail	phage tail fiber assembly protein	tail	Q2A0A8	Sodalis_phage	31.0	4.2e-12
WP_003838073.1|4235964_4236552_-	hypothetical protein	NA	F1BUK5	Cronobacter_phage	83.1	1.1e-92
WP_003838071.1|4236544_4237729_-	hypothetical protein	NA	F1BUK6	Cronobacter_phage	80.9	1.3e-182
WP_000004502.1|4237725_4238055_-	DUF2590 family protein	NA	F1BUK8	Cronobacter_phage	68.8	9.3e-38
WP_003838068.1|4238051_4240112_-|tail	phage tail tape measure protein	tail	F1BUK9	Cronobacter_phage	69.2	1.7e-270
WP_003838066.1|4240299_4240557_-	hypothetical protein	NA	A5X9I7	Aeromonas_virus	57.3	4.9e-18
WP_003838063.1|4240661_4241042_-	hypothetical protein	NA	F1BUL2	Cronobacter_phage	64.2	5.3e-29
4241034:4241048	attL	GTGATTCATCAGCGC	NA	NA	NA	NA
WP_000175561.1|4241041_4241383_-	M15 family metallopeptidase	NA	F1BUL3	Cronobacter_phage	94.1	6.9e-52
WP_001738730.1|4241369_4241672_-	Holin from bacteriophage origin	NA	A0A0M5M1H1	Salmonella_phage	55.3	1.4e-19
WP_000044253.1|4241682_4242138_-	DUF2597 family protein	NA	F1BUL4	Cronobacter_phage	72.8	5.9e-59
WP_003838055.1|4242134_4243262_-	DUF2586 family protein	NA	F1BUL5	Cronobacter_phage	81.1	7.6e-172
WP_003838053.1|4243258_4243966_-	hypothetical protein	NA	F1BUL6	Cronobacter_phage	75.6	3.7e-100
WP_003838051.1|4243962_4244469_-|tail	phage tail protein	tail	F1BUL7	Cronobacter_phage	68.7	4.7e-65
WP_032941129.1|4244465_4244954_-|head	head completion/stabilization protein	head	F1BUL8	Cronobacter_phage	83.3	6.6e-64
WP_003838045.1|4245014_4245716_-|terminase	terminase endonuclease subunit from bacteriophage origin	terminase	F1BUM0	Cronobacter_phage	69.4	2.0e-90
WP_003838043.1|4245719_4246742_-|capsid	phage major capsid protein, P2 family	capsid	F1BUM2	Cronobacter_phage	81.8	1.0e-159
WP_003838041.1|4246803_4247607_-|capsid	phage capsid scaffolding protein	capsid	F1BUM4	Cronobacter_phage	57.1	3.4e-81
WP_003838038.1|4247768_4249544_+	Terminase ATPase subunit from bacteriophage origin	NA	F1BUM5	Cronobacter_phage	83.6	6.8e-292
WP_003838036.1|4249540_4250602_+|portal	phage portal protein	portal	F1BUM7	Cronobacter_phage	77.5	1.0e-162
WP_012602735.1|4250598_4250922_+	ogr/Delta-like zinc finger family protein	NA	F1BUM8	Cronobacter_phage	93.3	4.7e-50
WP_000364823.1|4250895_4251102_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003838018.1|4251221_4253246_-	replication endonuclease	NA	F1BUM9	Cronobacter_phage	69.8	2.8e-278
WP_003838016.1|4253238_4253451_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003838014.1|4253447_4254317_-	DNA adenine methylase	NA	F1BUN1	Cronobacter_phage	82.0	3.8e-131
WP_003838012.1|4254307_4254541_-	DUF2732 family protein	NA	NA	NA	NA	NA
WP_003838010.1|4254608_4255010_-	hypothetical protein	NA	F1BUN2	Cronobacter_phage	66.9	2.2e-49
WP_003838008.1|4255009_4255438_-	hypothetical protein	NA	F1BUN5	Cronobacter_phage	52.8	7.4e-27
WP_003838006.1|4255427_4255655_-	DUF2724 domain-containing protein	NA	NA	NA	NA	NA
WP_000460873.1|4255664_4256168_-	hypothetical protein	NA	F1BUN6	Cronobacter_phage	71.9	1.3e-59
WP_003838003.1|4256198_4256420_-	hypothetical protein	NA	NA	NA	NA	NA
WP_032941131.1|4256553_4257135_+	phage repressor protein CI	NA	F1BUS8	Erwinia_phage	36.0	3.7e-29
WP_003838000.1|4257136_4258180_+|integrase	tyrosine-type recombinase/integrase	integrase	F1BUS9	Erwinia_phage	63.8	1.6e-123
4263316:4263330	attR	GCGCTGATGAATCAC	NA	NA	NA	NA
