assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_011067085.1_ASM1106708v1	NZ_CP049348	Escherichia coli strain 3R chromosome, complete genome	1	595700-595796	1	CRISPRCasFinder	no		DEDDh,RT,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	Orphan	GCTTGACGCGTCTTATCAGGCCTACAA	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL,cas14j	NA,NA	NA|454aa|up_9|NZ_CP049348.1_583569_584931_+	PRK08044, PRK08044, allantoinase AllB	NA|434aa|up_8|NZ_CP049348.1_584987_586289_+	PRK11412, PRK11412, uracil/xanthine transporter	NA|382aa|up_7|NZ_CP049348.1_586310_587456_+	PRK09932, PRK09932, glycerate 3-kinase	NA|262aa|up_6|NZ_CP049348.1_587584_588370_-	COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]	NA|412aa|up_5|NZ_CP049348.1_588380_589616_-	TIGR03176, AllC, allantoate amidohydrolase	NA|350aa|up_4|NZ_CP049348.1_589637_590687_-	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|556aa|up_3|NZ_CP049348.1_591003_592671_+	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|420aa|up_2|NZ_CP049348.1_592680_593940_+	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|272aa|up_1|NZ_CP049348.1_593950_594766_+	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|298aa|up_0|NZ_CP049348.1_594762_595656_+	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|356aa|down_0|NZ_CP049348.1_595860_596928_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|170aa|down_1|NZ_CP049348.1_596924_597434_-	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|241aa|down_2|NZ_CP049348.1_597551_598274_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|165aa|down_3|NZ_CP049348.1_598276_598771_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|462aa|down_4|NZ_CP049348.1_598944_600330_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|174aa|down_5|NZ_CP049348.1_600365_600887_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|71aa|down_6|NZ_CP049348.1_600994_601207_-	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|289aa|down_7|NZ_CP049348.1_601208_602075_-	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|181aa|down_8|NZ_CP049348.1_602555_603098_+	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|231aa|down_9|NZ_CP049348.1_603317_604010_+	PRK15195, PRK15195, molecular chaperone FimC
GCF_011067085.1_ASM1106708v1	NZ_CP049348	Escherichia coli strain 3R chromosome, complete genome	2	834765-834904	2	CRISPRCasFinder	no		DEDDh,RT,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	Orphan	CGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATTCGACCTAC	47	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL,cas14j	NA,NA	NA|50aa|up_9|NZ_CP049348.1_823745_823895_+	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ	NA|258aa|up_8|NZ_CP049348.1_824060_824834_+	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|230aa|up_7|NZ_CP049348.1_824833_825523_+	PRK09421, modB, molybdate ABC transporter permease subunit	NA|353aa|up_6|NZ_CP049348.1_825525_826584_+	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|273aa|up_5|NZ_CP049348.1_826584_827403_-	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|332aa|up_4|NZ_CP049348.1_827557_828553_+	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|318aa|up_3|NZ_CP049348.1_828593_829547_-	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|351aa|up_2|NZ_CP049348.1_829730_830783_+	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|478aa|up_1|NZ_CP049348.1_830858_832292_+	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|754aa|up_0|NZ_CP049348.1_832474_834736_+	PRK11413, PRK11413, putative hydratase; Provisional	NA|428aa|down_0|NZ_CP049348.1_834969_836253_-	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|159aa|down_1|NZ_CP049348.1_836404_836881_-	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|430aa|down_2|NZ_CP049348.1_836939_838229_-	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|347aa|down_3|NZ_CP049348.1_838315_839356_+	PRK15108, PRK15108, biotin synthase; Provisional	NA|385aa|down_4|NZ_CP049348.1_839352_840507_+	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|252aa|down_5|NZ_CP049348.1_840493_841249_+	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|226aa|down_6|NZ_CP049348.1_841241_841919_+	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|674aa|down_7|NZ_CP049348.1_842497_844519_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|303aa|down_8|NZ_CP049348.1_844710_845619_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|330aa|down_9|NZ_CP049348.1_846015_847005_+	PRK00164, moaA, GTP 3',8-cyclase MoaA
GCF_011067085.1_ASM1106708v1	NZ_CP049348	Escherichia coli strain 3R chromosome, complete genome	3	2893096-2894283	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,RT,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	19,19,19	19	TypeI-E	DEDDh,RT,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL,cas14j	NA,NA	NA|254aa|up_9|NZ_CP049348.1_2884908_2885670_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP049348.1_2885650_2886700_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP049348.1_2886696_2887176_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP049348.1_2887175_2887886_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP049348.1_2887904_2888216_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP049348.1_2888409_2888733_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP049348.1_2888782_2889388_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP049348.1_2889387_2890815_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP049348.1_2890816_2891725_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP049348.1_2891976_2893014_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP049348.1_2894379_2894673_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP049348.1_2894672_2895593_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP049348.1_2895589_2896240_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP049348.1_2896221_2896968_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP049348.1_2896978_2898034_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|180aa|down_5|NZ_CP049348.1_2898045_2898585_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|down_6|NZ_CP049348.1_2898581_2900144_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP049348.1_2900241_2902941_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP049348.1_2903134_2903287_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP049348.1_2903551_2904286_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_011067085.1_ASM1106708v1	NZ_CP049348	Escherichia coli strain 3R chromosome, complete genome	4	2919986-2920868	4,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	DEDDh,RT,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	14,14,14	14	Unclear	DEDDh,RT,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL,cas14j	NA,NA|47aa|down_1|NZ_CP049348.1_2922017_2922158_+	NA|424aa|up_9|NZ_CP049348.1_2908629_2909901_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_CP049348.1_2909891_2910152_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_CP049348.1_2910168_2910744_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|298aa|up_6|NZ_CP049348.1_2910891_2911785_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP049348.1_2911748_2912528_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|NZ_CP049348.1_2912505_2913915_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP049348.1_2913936_2915391_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP049348.1_2915460_2916246_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP049348.1_2916564_2917842_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP049348.1_2917868_2919347_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP049348.1_2921207_2921879_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP049348.1_2922017_2922158_+	NA	NA|433aa|down_2|NZ_CP049348.1_2923103_2924402_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_3|NZ_CP049348.1_2924489_2926127_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_4|NZ_CP049348.1_2926354_2927146_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_5|NZ_CP049348.1_2927216_2927552_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_6|NZ_CP049348.1_2927551_2927800_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_7|NZ_CP049348.1_2927877_2930112_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_8|NZ_CP049348.1_2930159_2931461_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_9|NZ_CP049348.1_2931517_2934274_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional
