assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_011068405.1_ASM1106840v1	NZ_CP049699	Bradyrhizobium sp. 4(2017) strain 323S2 chromosome, complete genome	1	2339130-2339393	1	PILER-CR	no		csa3,RT,cas3,WYL,DEDDh	Orphan	CGGTGCGGTGCTGGCTCAAAACTCGAAAAGTTGGGAGCTCCCAACAGGGC	50	2	2	2339183-2339243|2339297-2339354	NZ_CP049699.1_2339394-2339454|NZ_CP049699.1_2339394-2339451	NA	2	2	Orphan	csa3,RT,cas3,WYL,DEDDh,PrimPol	NA|470aa|up_8|NZ_CP049699.1_2329494_2330904_-,NA|132aa|up_6|NZ_CP049699.1_2332649_2333045_-,NA|77aa|up_4|NZ_CP049699.1_2335506_2335737_+,NA|213aa|up_1|NZ_CP049699.1_2338050_2338689_+,NA|89aa|up_0|NZ_CP049699.1_2338759_2339026_+,NA|127aa|down_0|NZ_CP049699.1_2339413_2339794_-,NA|77aa|down_2|NZ_CP049699.1_2340274_2340505_+,NA|77aa|down_3|NZ_CP049699.1_2340501_2340732_+	NA|395aa|up_9|NZ_CP049699.1_2328196_2329381_+	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain	NA|470aa|up_8|NZ_CP049699.1_2329494_2330904_-	NA	NA|388aa|up_7|NZ_CP049699.1_2331028_2332192_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|132aa|up_6|NZ_CP049699.1_2332649_2333045_-	NA	NA|377aa|up_5|NZ_CP049699.1_2333261_2334391_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|77aa|up_4|NZ_CP049699.1_2335506_2335737_+	NA	NA|182aa|up_3|NZ_CP049699.1_2335772_2336318_-	TIGR02293, conserved_protein_of_unknown_function, putative toxin-antitoxin system antitoxin component, TIGR02293 family	NA|423aa|up_2|NZ_CP049699.1_2336306_2337575_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|213aa|up_1|NZ_CP049699.1_2338050_2338689_+	NA	NA|89aa|up_0|NZ_CP049699.1_2338759_2339026_+	NA	NA|127aa|down_0|NZ_CP049699.1_2339413_2339794_-	NA	NA|60aa|down_1|NZ_CP049699.1_2339971_2340151_+	pfam05930, Phage_AlpA, Prophage CP4-57 regulatory protein (AlpA)	NA|77aa|down_2|NZ_CP049699.1_2340274_2340505_+	NA	NA|77aa|down_3|NZ_CP049699.1_2340501_2340732_+	NA	NA|261aa|down_4|NZ_CP049699.1_2342031_2342814_-	PRK05995, PRK05995, enoyl-CoA hydratase; Provisional	NA|324aa|down_5|NZ_CP049699.1_2345265_2346237_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|157aa|down_6|NZ_CP049699.1_2346252_2346723_+	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]	NA|709aa|down_7|NZ_CP049699.1_2346725_2348852_+	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]	NA|233aa|down_8|NZ_CP049699.1_2348848_2349547_+	pfam13531, SBP_bac_11, Bacterial extracellular solute-binding protein	NA|269aa|down_9|NZ_CP049699.1_2349562_2350369_-	PRK07231, FabG-like, SDR family oxidoreductase
GCF_011068405.1_ASM1106840v1	NZ_CP049699	Bradyrhizobium sp. 4(2017) strain 323S2 chromosome, complete genome	2	3069146-3069252	1	CRISPRCasFinder	no		csa3,RT,cas3,WYL,DEDDh	Orphan	GAATAGACCGGCGGAGCGCCAGCCGG	26	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,cas3,WYL,DEDDh,PrimPol	NA|94aa|up_4|NZ_CP049699.1_3063408_3063690_+,NA|72aa|up_1|NZ_CP049699.1_3066909_3067125_+,NA|724aa|down_7|NZ_CP049699.1_3076073_3078245_-,NA|104aa|down_8|NZ_CP049699.1_3079063_3079375_+	NA|475aa|up_9|NZ_CP049699.1_3059014_3060439_-	cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins	NA|201aa|up_8|NZ_CP049699.1_3060609_3061212_+	TIGR04025, hypothetical_protein, PPOX class probable FMN-dependent enzyme, DR_2398 family	NA|163aa|up_7|NZ_CP049699.1_3061384_3061873_-	cd00907, Bacterioferritin, Bacterioferritin, ferritin-like diiron-binding domain	NA|91aa|up_6|NZ_CP049699.1_3062004_3062277_-	cd19945, Fer2_BFD, bacterioferritin-associated ferredoxin (BFD) [2Fe-2S]-binding domain	NA|109aa|up_5|NZ_CP049699.1_3062870_3063197_+	pfam11737, DUF3300, Protein of unknown function (DUF3300)	NA|94aa|up_4|NZ_CP049699.1_3063408_3063690_+	NA	NA|409aa|up_3|NZ_CP049699.1_3063789_3065016_-	TIGR02283, Membrane-bound_lytic_murein_transglycosylase_B, lytic murein transglycosylase	NA|550aa|up_2|NZ_CP049699.1_3065023_3066673_-	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed	NA|72aa|up_1|NZ_CP049699.1_3066909_3067125_+	NA	NA|321aa|up_0|NZ_CP049699.1_3067270_3068233_+	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases	NA|261aa|down_0|NZ_CP049699.1_3069852_3070635_+	PRK10811, rne, ribonuclease E; Reviewed	NA|284aa|down_1|NZ_CP049699.1_3070637_3071489_-	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	NA|149aa|down_2|NZ_CP049699.1_3071685_3072132_-	cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain	NA|342aa|down_3|NZ_CP049699.1_3072170_3073196_+	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|392aa|down_4|NZ_CP049699.1_3073527_3074703_-	COG3825, COG3825, Uncharacterized protein conserved in bacteria [Function unknown]	NA|82aa|down_5|NZ_CP049699.1_3074826_3075072_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|281aa|down_6|NZ_CP049699.1_3075164_3076007_+	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|724aa|down_7|NZ_CP049699.1_3076073_3078245_-	NA	NA|104aa|down_8|NZ_CP049699.1_3079063_3079375_+	NA	NA|321aa|down_9|NZ_CP049699.1_3079554_3080517_+	pfam13730, HTH_36, Helix-turn-helix domain
GCF_011068405.1_ASM1106840v1	NZ_CP049699	Bradyrhizobium sp. 4(2017) strain 323S2 chromosome, complete genome	3	9785460-9785998	2,1	CRISPRCasFinder,CRT	no	RT	csa3,RT,cas3,WYL,DEDDh	Unclear	TTGTTGGCGATGTTGGCGCTGCCGGCCG,TGGCGCTGCCNGCCGNGCT	28,19	0	0	NA	NA	NA:NA	8,8	8	Orphan	csa3,RT,cas3,WYL,DEDDh,PrimPol	NA|98aa|up_8|NZ_CP049699.1_9772424_9772718_-,NA|114aa|down_7|NZ_CP049699.1_9799309_9799651_-	NA|240aa|up_9|NZ_CP049699.1_9771687_9772407_+	cd16841, RraA_family, ribonuclease activity regulator RraA family	NA|98aa|up_8|NZ_CP049699.1_9772424_9772718_-	NA	NA|275aa|up_7|NZ_CP049699.1_9772818_9773643_+	cd05327, retinol-DH_like_SDR_c_like, retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) OxidoReductase (LPOR) and related proteins, classical (c) SDRs	NA|258aa|up_6|NZ_CP049699.1_9773869_9774643_+	PRK08990, PRK08990, flagellar motor protein PomA; Reviewed	NA|277aa|up_5|NZ_CP049699.1_9774667_9775498_+	COG1360, MotB, Flagellar motor protein [Cell motility and secretion]	NA|633aa|up_4|NZ_CP049699.1_9775771_9777670_+	COG3158, Kup, K+ transporter [Inorganic ion transport and metabolism]	NA|643aa|up_3|NZ_CP049699.1_9777810_9779739_+	COG3158, Kup, K+ transporter [Inorganic ion transport and metabolism]	NA|109aa|up_2|NZ_CP049699.1_9780043_9780370_+	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|394aa|up_1|NZ_CP049699.1_9780377_9781559_+	PRK08912, PRK08912, aminotransferase	NA|371aa|up_0|NZ_CP049699.1_9781564_9782677_+	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold	NA|620aa|down_0|NZ_CP049699.1_9790031_9791891_+	COG3710, CadC, DNA-binding winged-HTH domains [Transcription]	RT|434aa|down_1|NZ_CP049699.1_9792212_9793514_+	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|311aa|down_2|NZ_CP049699.1_9794862_9795795_-	PRK06553, PRK06553, lipid A biosynthesis lauroyl acyltransferase; Provisional	NA|426aa|down_3|NZ_CP049699.1_9795803_9797081_-	PRK06501, PRK06501, beta-ketoacyl-ACP synthase	NA|402aa|down_4|NZ_CP049699.1_9797128_9798334_-	PRK06519, PRK06519, beta-ketoacyl-ACP synthase	NA|157aa|down_5|NZ_CP049699.1_9798330_9798801_-	COG0764, FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]	NA|96aa|down_6|NZ_CP049699.1_9798811_9799099_-	PRK06508, PRK06508, acyl carrier protein; Provisional	NA|114aa|down_7|NZ_CP049699.1_9799309_9799651_-	NA	NA|210aa|down_8|NZ_CP049699.1_9799989_9800619_+	COG4318, COG4318, Uncharacterized protein conserved in bacteria [Function unknown]	NA|52aa|down_9|NZ_CP049699.1_9800634_9800790_-	cd19345, Wnt_Wnt2, Wnt domain found in protein Wnt-2 and similar proteins
GCF_011068405.1_ASM1106840v1	NZ_CP049699	Bradyrhizobium sp. 4(2017) strain 323S2 chromosome, complete genome	4	9786087-9786171	3	CRISPRCasFinder	no	RT	csa3,RT,cas3,WYL,DEDDh	Unclear	TTGTTGGCGATGTTGGCGCTGCCGGCCG	28	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,cas3,WYL,DEDDh,PrimPol	NA|98aa|up_8|NZ_CP049699.1_9772424_9772718_-,NA|114aa|down_7|NZ_CP049699.1_9799309_9799651_-	NA|240aa|up_9|NZ_CP049699.1_9771687_9772407_+	cd16841, RraA_family, ribonuclease activity regulator RraA family	NA|98aa|up_8|NZ_CP049699.1_9772424_9772718_-	NA	NA|275aa|up_7|NZ_CP049699.1_9772818_9773643_+	cd05327, retinol-DH_like_SDR_c_like, retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) OxidoReductase (LPOR) and related proteins, classical (c) SDRs	NA|258aa|up_6|NZ_CP049699.1_9773869_9774643_+	PRK08990, PRK08990, flagellar motor protein PomA; Reviewed	NA|277aa|up_5|NZ_CP049699.1_9774667_9775498_+	COG1360, MotB, Flagellar motor protein [Cell motility and secretion]	NA|633aa|up_4|NZ_CP049699.1_9775771_9777670_+	COG3158, Kup, K+ transporter [Inorganic ion transport and metabolism]	NA|643aa|up_3|NZ_CP049699.1_9777810_9779739_+	COG3158, Kup, K+ transporter [Inorganic ion transport and metabolism]	NA|109aa|up_2|NZ_CP049699.1_9780043_9780370_+	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|394aa|up_1|NZ_CP049699.1_9780377_9781559_+	PRK08912, PRK08912, aminotransferase	NA|371aa|up_0|NZ_CP049699.1_9781564_9782677_+	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold	NA|620aa|down_0|NZ_CP049699.1_9790031_9791891_+	COG3710, CadC, DNA-binding winged-HTH domains [Transcription]	RT|434aa|down_1|NZ_CP049699.1_9792212_9793514_+	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|311aa|down_2|NZ_CP049699.1_9794862_9795795_-	PRK06553, PRK06553, lipid A biosynthesis lauroyl acyltransferase; Provisional	NA|426aa|down_3|NZ_CP049699.1_9795803_9797081_-	PRK06501, PRK06501, beta-ketoacyl-ACP synthase	NA|402aa|down_4|NZ_CP049699.1_9797128_9798334_-	PRK06519, PRK06519, beta-ketoacyl-ACP synthase	NA|157aa|down_5|NZ_CP049699.1_9798330_9798801_-	COG0764, FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]	NA|96aa|down_6|NZ_CP049699.1_9798811_9799099_-	PRK06508, PRK06508, acyl carrier protein; Provisional	NA|114aa|down_7|NZ_CP049699.1_9799309_9799651_-	NA	NA|210aa|down_8|NZ_CP049699.1_9799989_9800619_+	COG4318, COG4318, Uncharacterized protein conserved in bacteria [Function unknown]	NA|52aa|down_9|NZ_CP049699.1_9800634_9800790_-	cd19345, Wnt_Wnt2, Wnt domain found in protein Wnt-2 and similar proteins
GCF_011068405.1_ASM1106840v1	NZ_CP049702	Bradyrhizobium sp. 4(2017) strain 323S2 plasmid pB323S2c, complete sequence	1	102773-102923	1	CRISPRCasFinder	no	WYL	WYL,RT	Unclear	GCGGCATCGAGACGCTCCCTTTCCATTTTTAGGAATGAGTTTTCCT	46	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,cas3,WYL,DEDDh,PrimPol	NA|317aa|up_9|NZ_CP049702.1_88530_89481_+,NA|342aa|up_6|NZ_CP049702.1_91820_92846_+,NA|68aa|up_2|NZ_CP049702.1_98004_98208_-,NA|278aa|up_1|NZ_CP049702.1_98759_99593_+,NA|194aa|up_0|NZ_CP049702.1_99646_100228_+,NA|62aa|down_0|NZ_CP049702.1_103327_103513_-,NA|143aa|down_7|NZ_CP049702.1_113152_113581_+,NA|164aa|down_8|NZ_CP049702.1_113577_114069_+	NA|317aa|up_9|NZ_CP049702.1_88530_89481_+	NA	NA|64aa|up_8|NZ_CP049702.1_89524_89716_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|621aa|up_7|NZ_CP049702.1_89803_91666_+	TIGR01613, putative_primase, phage/plasmid primase, P4 family, C-terminal domain	NA|342aa|up_6|NZ_CP049702.1_91820_92846_+	NA	NA|703aa|up_5|NZ_CP049702.1_93526_95635_+	pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	NA|349aa|up_4|NZ_CP049702.1_95887_96934_+	pfam14175, YaaC, YaaC-like Protein	NA|172aa|up_3|NZ_CP049702.1_96933_97449_+	pfam05014, Nuc_deoxyrib_tr, Nucleoside 2-deoxyribosyltransferase	NA|68aa|up_2|NZ_CP049702.1_98004_98208_-	NA	NA|278aa|up_1|NZ_CP049702.1_98759_99593_+	NA	NA|194aa|up_0|NZ_CP049702.1_99646_100228_+	NA	NA|62aa|down_0|NZ_CP049702.1_103327_103513_-	NA	NA|404aa|down_1|NZ_CP049702.1_103559_104771_-	pfam01734, Patatin, Patatin-like phospholipase	NA|752aa|down_2|NZ_CP049702.1_104767_107023_-	pfam14457, Prok-E2_A, Prokaryotic E2 family A	NA|378aa|down_3|NZ_CP049702.1_107024_108158_-	cd07731, ComA-like_MBL-fold, Competence protein ComA, ComEC and related proteins; MBL-fold metallo hydrolase domain	WYL|288aa|down_4|NZ_CP049702.1_108317_109181_+	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|1166aa|down_5|NZ_CP049702.1_109206_112704_+	cd18011, DEXDc_RapA, DEXH-box helicase domain of RapA	NA|155aa|down_6|NZ_CP049702.1_112700_113165_+	cd06554, ASCH_ASC-1_like, ASC-1 homology domain, ASC-1-like subfamily	NA|143aa|down_7|NZ_CP049702.1_113152_113581_+	NA	NA|164aa|down_8|NZ_CP049702.1_113577_114069_+	NA	NA|1408aa|down_9|NZ_CP049702.1_114083_118307_+	pfam13589, HATPase_c_3, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
