assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_011212365.1_ASM1121236v1	NZ_CP047607	Methylobacterium sp. NI91 chromosome, complete genome	1	1022032-1022120	1	CRISPRCasFinder	no		csa3,DEDDh,WYL,cas3,Cas9_archaeal	Orphan	GCATCGTCTTTTCCCGAAAGCCGGT	25	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,WYL,cas3,Cas9_archaeal	NA,NA|131aa|down_9|NZ_CP047607.1_1030208_1030601_+	NA|136aa|up_9|NZ_CP047607.1_1011921_1012329_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|112aa|up_8|NZ_CP047607.1_1012778_1013114_+	COG2329, COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides [General function prediction only]	NA|502aa|up_7|NZ_CP047607.1_1013955_1015461_+	TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase	NA|197aa|up_6|NZ_CP047607.1_1015546_1016137_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|298aa|up_5|NZ_CP047607.1_1016514_1017408_+	cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters	NA|296aa|up_4|NZ_CP047607.1_1017404_1018292_+	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]	NA|199aa|up_3|NZ_CP047607.1_1018561_1019158_-	pfam06055, ExoD, Exopolysaccharide synthesis, ExoD	NA|254aa|up_2|NZ_CP047607.1_1019445_1020207_+	pfam17036, CBP_BcsS, Cellulose biosynthesis protein BcsS	NA|245aa|up_1|NZ_CP047607.1_1020213_1020948_-	cd05233, SDR_c, classical (c) SDRs	NA|289aa|up_0|NZ_CP047607.1_1021113_1021980_+	COG0223, Fmt, Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]	NA|51aa|down_0|NZ_CP047607.1_1022156_1022309_+	pfam10013, DUF2256, Uncharacterized protein conserved in bacteria (DUF2256)	NA|198aa|down_1|NZ_CP047607.1_1022315_1022909_-	cd04182, GT_2_like_f, GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function	NA|337aa|down_2|NZ_CP047607.1_1022895_1023906_-	cd03522, MoeA_like, MoeA_like	NA|239aa|down_3|NZ_CP047607.1_1023910_1024627_-	pfam13478, XdhC_C, XdhC Rossmann domain	NA|108aa|down_4|NZ_CP047607.1_1024691_1025015_-	COG1975, XdhC, Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family [Posttranslational modification, protein turnover, chaperones]	NA|371aa|down_5|NZ_CP047607.1_1025183_1026296_+	cd06342, PBP1_ABC_LIVBP-like, type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine)	NA|92aa|down_6|NZ_CP047607.1_1026620_1026896_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|749aa|down_7|NZ_CP047607.1_1026973_1029220_-	PRK05561, PRK05561, DNA topoisomerase 4 subunit A	NA|248aa|down_8|NZ_CP047607.1_1029337_1030081_-	PRK00085, recO, DNA repair protein RecO; Reviewed	NA|131aa|down_9|NZ_CP047607.1_1030208_1030601_+	NA
GCF_011212365.1_ASM1121236v1	NZ_CP047607	Methylobacterium sp. NI91 chromosome, complete genome	2	1410369-1410466	2	CRISPRCasFinder	no		csa3,DEDDh,WYL,cas3,Cas9_archaeal	Orphan	TTCCGAAAGCTGGTGGCCACCTTTCGGGACGATGC	35	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,WYL,cas3,Cas9_archaeal	NA|244aa|up_2|NZ_CP047607.1_1407770_1408502_-,NA|76aa|down_9|NZ_CP047607.1_1418803_1419031_-	NA|1769aa|up_9|NZ_CP047607.1_1395264_1400571_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|688aa|up_8|NZ_CP047607.1_1400626_1402690_+	COG4953, PbpC, Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell envelope biogenesis, outer membrane]	NA|107aa|up_7|NZ_CP047607.1_1402841_1403162_+	PRK11431, PRK11431, quaternary ammonium compound efflux SMR transporter SugE	NA|264aa|up_6|NZ_CP047607.1_1403171_1403963_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|216aa|up_5|NZ_CP047607.1_1404013_1404661_-	TIGR03784, marine_sortase, sortase, marine proteobacterial type	NA|728aa|up_4|NZ_CP047607.1_1404657_1406841_-	TIGR03788, marine_srt_targ, marine proteobacterial sortase target protein	NA|203aa|up_3|NZ_CP047607.1_1407074_1407683_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|244aa|up_2|NZ_CP047607.1_1407770_1408502_-	NA	NA|338aa|up_1|NZ_CP047607.1_1408567_1409581_-	COG2215, COG2215, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|222aa|up_0|NZ_CP047607.1_1409571_1410237_-	pfam06226, DUF1007, Protein of unknown function (DUF1007)	NA|153aa|down_0|NZ_CP047607.1_1410467_1410926_-	pfam03918, CcmH, Cytochrome C biogenesis protein	NA|667aa|down_1|NZ_CP047607.1_1410922_1412923_-	COG1138, CcmF, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]	NA|174aa|down_2|NZ_CP047607.1_1412981_1413503_-	PRK13254, PRK13254, cytochrome c maturation protein CcmE	NA|517aa|down_3|NZ_CP047607.1_1413663_1415214_-	COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]	NA|472aa|down_4|NZ_CP047607.1_1415361_1416777_-	cd16954, HATPase_PhoQ-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli PhoQ and Providencia stuartii AarG	NA|79aa|down_5|NZ_CP047607.1_1416869_1417106_+	pfam07704, PSK_trans_fac, Rv0623-like transcription factor	NA|133aa|down_6|NZ_CP047607.1_1417105_1417504_+	cd09871, PIN_MtVapC28-VapC30-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC28 and 30 and related proteins	NA|226aa|down_7|NZ_CP047607.1_1417508_1418186_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|124aa|down_8|NZ_CP047607.1_1418235_1418607_-	pfam03413, PepSY, Peptidase propeptide and YPEB domain	NA|76aa|down_9|NZ_CP047607.1_1418803_1419031_-	NA
GCF_011212365.1_ASM1121236v1	NZ_CP047607	Methylobacterium sp. NI91 chromosome, complete genome	3	2098678-2098767	3	CRISPRCasFinder	no		csa3,DEDDh,WYL,cas3,Cas9_archaeal	Orphan	CCGGCTTTCGGAAAAAGACGATGCAC	26	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,WYL,cas3,Cas9_archaeal	NA|101aa|up_4|NZ_CP047607.1_2093431_2093734_-,NA|110aa|down_0|NZ_CP047607.1_2098777_2099107_-,NA|68aa|down_6|NZ_CP047607.1_2105961_2106165_-,NA|80aa|down_7|NZ_CP047607.1_2106176_2106416_-	NA|499aa|up_9|NZ_CP047607.1_2082869_2084366_+	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism]	NA|419aa|up_8|NZ_CP047607.1_2084707_2085964_+	pfam07642, BBP2, Putative beta-barrel porin-2, OmpL-like	NA|871aa|up_7|NZ_CP047607.1_2086173_2088786_+	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]	NA|712aa|up_6|NZ_CP047607.1_2088932_2091068_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|656aa|up_5|NZ_CP047607.1_2091445_2093413_+	COG3920, COG3920, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|101aa|up_4|NZ_CP047607.1_2093431_2093734_-	NA	NA|773aa|up_3|NZ_CP047607.1_2093730_2096049_-	TIGR01701, Hypothetical_protein_Rv2900c/MT2968/Mb2924c	NA|359aa|up_2|NZ_CP047607.1_2096379_2097456_-	PRK05286, PRK05286, quinone-dependent dihydroorotate dehydrogenase	NA|117aa|up_1|NZ_CP047607.1_2097452_2097803_-	COG3502, COG3502, Uncharacterized protein conserved in bacteria [Function unknown]	NA|211aa|up_0|NZ_CP047607.1_2098016_2098649_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|110aa|down_0|NZ_CP047607.1_2098777_2099107_-	NA	NA|72aa|down_1|NZ_CP047607.1_2099260_2099476_-	pfam11324, DUF3126, Protein of unknown function (DUF3126)	NA|287aa|down_2|NZ_CP047607.1_2099615_2100476_-	PRK11132, cysE, serine acetyltransferase; Provisional	NA|300aa|down_3|NZ_CP047607.1_2100735_2101635_-	PRK08154, PRK08154, anaerobic benzoate catabolism transcriptional regulator; Reviewed	NA|542aa|down_4|NZ_CP047607.1_2101926_2103552_-	cd08493, PBP2_DppA_like, The substrate-binding component of an ABC-type dipeptide import system contains the type 2 periplasmic binding fold	NA|764aa|down_5|NZ_CP047607.1_2103548_2105840_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|68aa|down_6|NZ_CP047607.1_2105961_2106165_-	NA	NA|80aa|down_7|NZ_CP047607.1_2106176_2106416_-	NA	NA|252aa|down_8|NZ_CP047607.1_2106590_2107346_-	PRK09468, ompR, osmolarity response regulator; Provisional	NA|609aa|down_9|NZ_CP047607.1_2107758_2109585_+	pfam11849, DUF3369, Domain of unknown function (DUF3369)
GCF_011212365.1_ASM1121236v1	NZ_CP047607	Methylobacterium sp. NI91 chromosome, complete genome	4	4809542-4809631	4	CRISPRCasFinder	no		csa3,DEDDh,WYL,cas3,Cas9_archaeal	Orphan	GAGCATCGTCCCGAAAGGTGGTCGCCGGC	29	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,WYL,cas3,Cas9_archaeal	NA|72aa|up_8|NZ_CP047607.1_4799484_4799700_+,NA|265aa|down_5|NZ_CP047607.1_4817789_4818584_+	NA|187aa|up_9|NZ_CP047607.1_4798720_4799281_+	pfam12836, HHH_3, Helix-hairpin-helix motif	NA|72aa|up_8|NZ_CP047607.1_4799484_4799700_+	NA	NA|168aa|up_7|NZ_CP047607.1_4799696_4800200_+	pfam11454, DUF3016, Protein of unknown function (DUF3016)	NA|295aa|up_6|NZ_CP047607.1_4801179_4802064_+	COG1409, Icc, Predicted phosphohydrolases [General function prediction only]	NA|487aa|up_5|NZ_CP047607.1_4802086_4803547_-	COG0591, PutP, Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]	NA|68aa|up_4|NZ_CP047607.1_4803543_4803747_-	pfam11755, DUF3311, Protein of unknown function (DUF3311)	NA|679aa|up_3|NZ_CP047607.1_4803902_4805939_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|150aa|up_2|NZ_CP047607.1_4806471_4806921_-	cd07176, terB, tellurite resistance protein terB	NA|249aa|up_1|NZ_CP047607.1_4806968_4807715_-	cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a member of the nucleotidyl transferase family	NA|545aa|up_0|NZ_CP047607.1_4807748_4809383_-	COG3178, COG3178, Predicted phosphotransferase related to Ser/Thr protein kinases [General function prediction only]	NA|838aa|down_0|NZ_CP047607.1_4809652_4812166_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|469aa|down_1|NZ_CP047607.1_4812658_4814065_-	pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hydrolase	NA|543aa|down_2|NZ_CP047607.1_4814232_4815861_-	cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)	NA|204aa|down_3|NZ_CP047607.1_4816014_4816626_-	cd02138, TdsD-like, nitroreductase similar to Burkholderia pseudomallei TdsD	NA|263aa|down_4|NZ_CP047607.1_4816794_4817583_+	PRK08139, PRK08139, enoyl-CoA hydratase; Validated	NA|265aa|down_5|NZ_CP047607.1_4817789_4818584_+	NA	NA|259aa|down_6|NZ_CP047607.1_4818766_4819543_+	pfam03372, Exo_endo_phos, Endonuclease/Exonuclease/phosphatase family	NA|479aa|down_7|NZ_CP047607.1_4819436_4820873_-	PRK01642, cls, cardiolipin synthetase; Reviewed	NA|1046aa|down_8|NZ_CP047607.1_4821086_4824224_+	TIGR02786, conserved_hypothetical_protein, double-strand break repair protein AddB, alphaproteobacterial type	NA|1145aa|down_9|NZ_CP047607.1_4824220_4827655_+	TIGR02784, ATP-dependent_nuclease_subunit_A, double-strand break repair helicase AddA, alphaproteobacterial type
GCF_011212365.1_ASM1121236v1	NZ_CP047607	Methylobacterium sp. NI91 chromosome, complete genome	5	5006524-5006618	5	CRISPRCasFinder	no		csa3,DEDDh,WYL,cas3,Cas9_archaeal	Orphan	TAGAGCATCGTCCCGAAAGGTGGCCCCCGGCT	32	1	3	5006556-5006586|5006556-5006586|5006556-5006586	NZ_CP047607.1_667567-667537|NZ_CP047607.1_3812981-3812951|NZ_CP047607.1_1072179-1072209	NA	1	1	Orphan	csa3,DEDDh,WYL,cas3,Cas9_archaeal	NA|146aa|up_4|NZ_CP047607.1_4999233_4999671_+,NA|87aa|down_4|NZ_CP047607.1_5011464_5011725_-,NA|87aa|down_5|NZ_CP047607.1_5011847_5012108_-,NA|78aa|down_8|NZ_CP047607.1_5013606_5013840_-,NA|73aa|down_9|NZ_CP047607.1_5014083_5014302_-	NA|376aa|up_9|NZ_CP047607.1_4993172_4994300_+	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|211aa|up_8|NZ_CP047607.1_4994296_4994929_+	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|909aa|up_7|NZ_CP047607.1_4995245_4997972_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|168aa|up_6|NZ_CP047607.1_4998099_4998603_+	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional	NA|180aa|up_5|NZ_CP047607.1_4998628_4999168_+	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]	NA|146aa|up_4|NZ_CP047607.1_4999233_4999671_+	NA	NA|154aa|up_3|NZ_CP047607.1_4999674_5000136_+	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]	NA|135aa|up_2|NZ_CP047607.1_5000328_5000733_-	cd18161, REC_hyHK_blue-like, phosphoacceptor receiver (REC) domain of hybrid sensor histidine kinase/response regulators similar to Pseudomonas savastanoi blue-light-activated histidine kinase	NA|258aa|up_1|NZ_CP047607.1_5001129_5001903_+	COG4544, COG4544, Uncharacterized conserved protein [Function unknown]	NA|501aa|up_0|NZ_CP047607.1_5001817_5003320_+	cd03468, PolY_like, DNA Polymerase Y-family	NA|359aa|down_0|NZ_CP047607.1_5006703_5007780_-	cd01902, Ntn_CGH, Choloylglycine hydrolase (CGH) is a bile salt-modifying enzyme that hydrolyzes non-peptide carbon-nitrogen bonds in choloylglycine and choloyltaurine, both of which are present in bile	NA|342aa|down_1|NZ_CP047607.1_5008345_5009371_+	cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to Z1214 protein of Escherichia coli	NA|365aa|down_2|NZ_CP047607.1_5009465_5010560_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|217aa|down_3|NZ_CP047607.1_5010684_5011335_+	cd03189, GST_C_GTT1_like, C-terminal, alpha helical domain of GTT1-like Glutathione S-transferases	NA|87aa|down_4|NZ_CP047607.1_5011464_5011725_-	NA	NA|87aa|down_5|NZ_CP047607.1_5011847_5012108_-	NA	NA|238aa|down_6|NZ_CP047607.1_5012563_5013277_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|81aa|down_7|NZ_CP047607.1_5013358_5013601_-	COG3514, COG3514, Uncharacterized protein conserved in bacteria [Function unknown]	NA|78aa|down_8|NZ_CP047607.1_5013606_5013840_-	NA	NA|73aa|down_9|NZ_CP047607.1_5014083_5014302_-	NA
