assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_011383085.1_ASM1138308v1	NZ_CP049936	Escherichia coli strain JL05 chromosome, complete genome	1	341783-341905	1	CRISPRCasFinder	no	DEDDh	DEDDh,DinG,c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT	NA,NA|30aa|down_7|NZ_CP049936.1_350799_350889_+	NA|471aa|up_9|NZ_CP049936.1_331236_332649_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP049936.1_333205_333415_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP049936.1_333870_334497_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP049936.1_334517_336620_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP049936.1_336632_337271_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP049936.1_337334_338003_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP049936.1_337999_338785_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP049936.1_338788_339601_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP049936.1_339612_341217_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP049936.1_341342_341648_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP049936.1_342219_343476_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP049936.1_343516_344890_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP049936.1_345104_345746_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP049936.1_345785_346934_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP049936.1_347222_348434_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP049936.1_348546_349479_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP049936.1_349475_350501_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP049936.1_350799_350889_+	NA	NA|390aa|down_8|NZ_CP049936.1_351054_352224_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP049936.1_352369_352951_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_011383085.1_ASM1138308v1	NZ_CP049936	Escherichia coli strain JL05 chromosome, complete genome	2	379302-379433	2	CRISPRCasFinder	no	DEDDh	DEDDh,DinG,c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT	Unclear	CTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGC	36	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT	NA,NA	NA|110aa|up_9|NZ_CP049936.1_369933_370263_+	PRK11372, PRK11372, C-type lysozyme inhibitor	NA|219aa|up_8|NZ_CP049936.1_370321_370978_+	PRK05679, PRK05679, pyridoxal 5'-phosphate synthase	NA|425aa|up_7|NZ_CP049936.1_371106_372381_+	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated	NA|287aa|up_6|NZ_CP049936.1_372442_373303_+	PRK05756, PRK05756, pyridoxal kinase PdxY	NA|202aa|up_5|NZ_CP049936.1_373346_373952_-	PRK10542, PRK10542, glutathionine S-transferase; Provisional	NA|501aa|up_4|NZ_CP049936.1_374057_375560_-	PRK09584, tppB, dipeptide/tripeptide permease DtpA	NA|212aa|up_3|NZ_CP049936.1_376170_376806_-	PRK10702, PRK10702, endonuclease III; Provisional	NA|232aa|up_2|NZ_CP049936.1_376805_377501_-	PRK12405, PRK12405, electron transport complex RsxE subunit; Provisional	NA|207aa|up_1|NZ_CP049936.1_377504_378125_-	PRK01908, PRK01908, electron transport complex protein RnfG; Validated	NA|353aa|up_0|NZ_CP049936.1_378128_379187_-	PRK00816, rnfD, electron transport complex protein RnfD; Reviewed	NA|193aa|down_0|NZ_CP049936.1_381114_381693_-	PRK05113, PRK05113, electron transport complex protein RnfB; Provisional	NA|194aa|down_1|NZ_CP049936.1_381692_382274_-	PRK05151, PRK05151, electron transport complex protein RsxA; Provisional	NA|147aa|down_2|NZ_CP049936.1_382350_382791_-	pfam10754, DUF2569, Protein of unknown function (DUF2569)	NA|72aa|down_3|NZ_CP049936.1_382876_383092_-	PRK10391, PRK10391, transcription modulator YdgT	NA|42aa|down_4|NZ_CP049936.1_383364_383490_-	NF033231, small_Blr, division septum protein Blr	NA|347aa|down_5|NZ_CP049936.1_383732_384773_+	PRK11579, PRK11579, putative oxidoreductase; Provisional	NA|334aa|down_6|NZ_CP049936.1_384807_385809_-	PRK09358, PRK09358, adenosine deaminase; Provisional	NA|391aa|down_7|NZ_CP049936.1_385912_387085_-	COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]	NA|343aa|down_8|NZ_CP049936.1_388860_389889_+	PRK10014, PRK10014, DNA-binding transcriptional repressor MalI; Provisional	NA|197aa|down_9|NZ_CP049936.1_390995_391586_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family
GCF_011383085.1_ASM1138308v1	NZ_CP049936	Escherichia coli strain JL05 chromosome, complete genome	3	956203-956294	3	CRISPRCasFinder	no		DEDDh,DinG,c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT	NA|70aa|up_9|NZ_CP049936.1_945453_945663_-,NA	NA|70aa|up_9|NZ_CP049936.1_945453_945663_-	NA	NA|1321aa|up_8|NZ_CP049936.1_945717_949680_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP049936.1_949719_950358_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP049936.1_950645_951737_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP049936.1_951736_952429_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP049936.1_952440_952827_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP049936.1_952834_953635_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP049936.1_953644_954235_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP049936.1_954245_954740_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP049936.1_954760_956089_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP049936.1_956717_957314_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP049936.1_957334_957562_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP049936.1_957599_958841_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|420aa|down_3|NZ_CP049936.1_959129_960389_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP049936.1_960648_961569_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP049936.1_961568_961874_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP049936.1_961966_962566_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP049936.1_962562_965109_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP049936.1_965108_966281_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP049936.1_966410_967103_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_011383085.1_ASM1138308v1	NZ_CP049936	Escherichia coli strain JL05 chromosome, complete genome	4	2040342-2040474	1	PILER-CR	no		DEDDh,DinG,c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	DEDDh,DinG,c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT	NA,NA	NA|274aa|up_9|NZ_CP049936.1_2030223_2031045_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|126aa|up_8|NZ_CP049936.1_2031047_2031425_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|281aa|up_7|NZ_CP049936.1_2031431_2032274_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|160aa|up_6|NZ_CP049936.1_2032351_2032831_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_5|NZ_CP049936.1_2033022_2034885_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_4|NZ_CP049936.1_2034877_2035408_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_3|NZ_CP049936.1_2035515_2036847_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_2|NZ_CP049936.1_2036904_2037192_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|314aa|up_1|NZ_CP049936.1_2038524_2039466_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP049936.1_2039480_2040251_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP049936.1_2040724_2042239_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP049936.1_2042269_2043412_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP049936.1_2043540_2044758_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP049936.1_2044831_2046385_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP049936.1_2046493_2047279_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP049936.1_2047284_2047875_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP049936.1_2047960_2048356_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_7|NZ_CP049936.1_2048615_2051837_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP049936.1_2051854_2053003_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP049936.1_2053458_2054280_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
GCF_011383085.1_ASM1138308v1	NZ_CP049936	Escherichia coli strain JL05 chromosome, complete genome	5	2274563-2274712	4	CRISPRCasFinder	no		DEDDh,DinG,c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT	Orphan	TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	54	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT	NA,NA|528aa|down_6|NZ_CP049936.1_2281921_2283505_-	NA|340aa|up_9|NZ_CP049936.1_2262797_2263817_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|188aa|up_8|NZ_CP049936.1_2263820_2264384_-	PRK09825, idnK, gluconokinase	NA|344aa|up_7|NZ_CP049936.1_2264600_2265632_+	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|255aa|up_6|NZ_CP049936.1_2265655_2266420_+	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|440aa|up_5|NZ_CP049936.1_2266482_2267802_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|333aa|up_4|NZ_CP049936.1_2267868_2268867_+	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|501aa|up_3|NZ_CP049936.1_2268944_2270447_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|NZ_CP049936.1_2270565_2271648_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP049936.1_2271647_2272748_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP049936.1_2273014_2274526_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP049936.1_2274879_2275323_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP049936.1_2275322_2278178_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|399aa|down_2|NZ_CP049936.1_2278231_2279428_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|NZ_CP049936.1_2279620_2280124_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_4|NZ_CP049936.1_2280169_2280586_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|338aa|down_5|NZ_CP049936.1_2280747_2281761_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|528aa|down_6|NZ_CP049936.1_2281921_2283505_-	NA	NA|151aa|down_7|NZ_CP049936.1_2283627_2284080_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|198aa|down_8|NZ_CP049936.1_2284224_2284818_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|238aa|down_9|NZ_CP049936.1_2284888_2285602_+	PRK12742, PRK12742, SDR family oxidoreductase
GCF_011383085.1_ASM1138308v1	NZ_CP049936	Escherichia coli strain JL05 chromosome, complete genome	6	3495051-3495302	2	PILER-CR	no		DEDDh,DinG,c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT	Orphan	TTTTGGAGGAGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAA	54	0	0	NA	NA	NA	2	2	Orphan	DEDDh,DinG,c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT	NA,NA|180aa|down_1|NZ_CP049936.1_3496809_3497349_-	NA|158aa|up_9|NZ_CP049936.1_3484625_3485099_-	PRK11425, PRK11425, PTS N-acetylgalactosamine transporter subunit IIB	NA|427aa|up_8|NZ_CP049936.1_3485121_3486402_-	PRK15458, PRK15458, tagatose 6-phosphate aldolase subunit KbaZ; Provisional	NA|270aa|up_7|NZ_CP049936.1_3486650_3487460_+	PRK09802, PRK09802, DeoR family transcriptional regulator	NA|155aa|up_6|NZ_CP049936.1_3487514_3487979_-	pfam11663, Toxin_YhaV, Toxin with endonuclease activity, of toxin-antitoxin system	NA|112aa|up_5|NZ_CP049936.1_3487978_3488314_-	PRK09974, PRK09974, type II toxin-antitoxin system PrlF family antitoxin	NA|524aa|up_4|NZ_CP049936.1_3488462_3490034_-	TIGR03248, galactar-dH20, galactarate dehydratase	NA|445aa|up_3|NZ_CP049936.1_3490408_3491743_+	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter	NA|257aa|up_2|NZ_CP049936.1_3491758_3492529_+	PRK10558, PRK10558, alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional	NA|297aa|up_1|NZ_CP049936.1_3492558_3493449_+	PRK11559, garR, tartronate semialdehyde reductase; Provisional	NA|382aa|up_0|NZ_CP049936.1_3493545_3494691_+	PRK10342, PRK10342, glycerate kinase I; Provisional	NA|396aa|down_0|NZ_CP049936.1_3495600_3496788_-	PRK09716, PRK09716, YhaC family protein	NA|180aa|down_1|NZ_CP049936.1_3496809_3497349_-	NA	NA|115aa|down_2|NZ_CP049936.1_3497604_3497949_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|down_3|NZ_CP049936.1_3498136_3499075_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|down_4|NZ_CP049936.1_3499173_3500163_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|down_5|NZ_CP049936.1_3500184_3501516_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|down_6|NZ_CP049936.1_3501541_3502750_+	PRK12379, PRK12379, propionate kinase	NA|765aa|down_7|NZ_CP049936.1_3502783_3505078_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|down_8|NZ_CP049936.1_3505091_3505481_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|down_9|NZ_CP049936.1_3505552_3506917_+	PRK15040, PRK15040, L-serine ammonia-lyase
GCF_011383085.1_ASM1138308v1	NZ_CP049936	Escherichia coli strain JL05 chromosome, complete genome	7	3509882-3509999	5	CRISPRCasFinder	no		DEDDh,DinG,c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT	Orphan	TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	40	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT	NA,NA|55aa|down_0|NZ_CP049936.1_3510072_3510237_-	NA|115aa|up_9|NZ_CP049936.1_3497604_3497949_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|up_8|NZ_CP049936.1_3498136_3499075_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|up_7|NZ_CP049936.1_3499173_3500163_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|up_6|NZ_CP049936.1_3500184_3501516_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|up_5|NZ_CP049936.1_3501541_3502750_+	PRK12379, PRK12379, propionate kinase	NA|765aa|up_4|NZ_CP049936.1_3502783_3505078_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|up_3|NZ_CP049936.1_3505091_3505481_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|up_2|NZ_CP049936.1_3505552_3506917_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|up_1|NZ_CP049936.1_3507191_3508523_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|up_0|NZ_CP049936.1_3508550_3509861_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_0|NZ_CP049936.1_3510072_3510237_-	NA	NA|234aa|down_1|NZ_CP049936.1_3510259_3510961_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|299aa|down_2|NZ_CP049936.1_3511065_3511962_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|119aa|down_3|NZ_CP049936.1_3512012_3512369_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|122aa|down_4|NZ_CP049936.1_3512610_3512976_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|329aa|down_5|NZ_CP049936.1_3513268_3514255_-	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|161aa|down_6|NZ_CP049936.1_3514324_3514807_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|100aa|down_7|NZ_CP049936.1_3514902_3515202_-	pfam13997, YqjK, YqjK-like protein	NA|135aa|down_8|NZ_CP049936.1_3515191_3515596_-	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|102aa|down_9|NZ_CP049936.1_3515598_3515904_-	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]
GCF_011383085.1_ASM1138308v1	NZ_CP049936	Escherichia coli strain JL05 chromosome, complete genome	8	3901239-3902914	3,6,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	DEDDh,DinG,c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	26,27,27	27	TypeI-E	DEDDh,DinG,c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT	NA|121aa|up_3|NZ_CP049936.1_3898135_3898498_-,NA	NA|745aa|up_9|NZ_CP049936.1_3891071_3893306_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_8|NZ_CP049936.1_3893383_3893632_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_7|NZ_CP049936.1_3893631_3893967_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_6|NZ_CP049936.1_3894037_3894829_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_5|NZ_CP049936.1_3895056_3896694_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_4|NZ_CP049936.1_3896781_3898080_+	PRK00077, eno, enolase; Provisional	NA|121aa|up_3|NZ_CP049936.1_3898135_3898498_-	NA	NA|302aa|up_2|NZ_CP049936.1_3898533_3899439_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|201aa|up_1|NZ_CP049936.1_3899452_3900055_-	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|224aa|up_0|NZ_CP049936.1_3900227_3900899_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|185aa|down_0|NZ_CP049936.1_3903551_3904106_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|122aa|down_1|NZ_CP049936.1_3904145_3904511_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|NZ_CP049936.1_3904826_3906626_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|NZ_CP049936.1_3906625_3908338_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|NZ_CP049936.1_3908411_3909146_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|down_5|NZ_CP049936.1_3909410_3909563_+	pfam01848, HOK_GEF, Hok/gef family	cas3|900aa|down_6|NZ_CP049936.1_3909756_3912456_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|down_7|NZ_CP049936.1_3912553_3914116_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|down_8|NZ_CP049936.1_3914112_3914649_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|down_9|NZ_CP049936.1_3914663_3915719_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI
GCF_011383085.1_ASM1138308v1	NZ_CP049936	Escherichia coli strain JL05 chromosome, complete genome	9	3918415-3919178	7,2,4,5	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	DEDDh,DinG,c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCGGG	29,29,29,31	0	0	NA	NA	I-E:I-E:I-E:I-E	12,12,9,9	12	TypeI-E	DEDDh,DinG,c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT	NA,NA	NA|245aa|up_9|NZ_CP049936.1_3908411_3909146_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_8|NZ_CP049936.1_3909410_3909563_+	pfam01848, HOK_GEF, Hok/gef family	cas3|900aa|up_7|NZ_CP049936.1_3909756_3912456_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_CP049936.1_3912553_3914116_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|NZ_CP049936.1_3914112_3914649_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|up_4|NZ_CP049936.1_3914663_3915719_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP049936.1_3915729_3916476_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP049936.1_3916457_3917108_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|NZ_CP049936.1_3917104_3918028_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP049936.1_3918024_3918318_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP049936.1_3919258_3920296_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP049936.1_3920547_3921456_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP049936.1_3921457_3922885_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP049936.1_3922884_3923490_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP049936.1_3923539_3923863_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP049936.1_3924056_3924368_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP049936.1_3924386_3925097_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP049936.1_3925096_3925576_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP049936.1_3925572_3926622_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP049936.1_3926602_3927364_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_011383085.1_ASM1138308v1	NZ_CP049936	Escherichia coli strain JL05 chromosome, complete genome	10	4686226-4686361	8	CRISPRCasFinder	no		DEDDh,DinG,c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT	Orphan	CTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCA	40	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT	NA,NA	NA|406aa|up_9|NZ_CP049936.1_4673691_4674909_+	TIGR04010, WcaD, putative colanic acid polymerase WcaD	NA|249aa|up_8|NZ_CP049936.1_4674919_4675666_+	PRK10063, PRK10063, colanic acid biosynthesis glycosyltransferase WcaE	NA|183aa|up_7|NZ_CP049936.1_4675681_4676230_+	TIGR04008, WcaF, colanic acid biosynthesis acetyltransferase WcaF	NA|374aa|up_6|NZ_CP049936.1_4676255_4677377_+	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]	NA|322aa|up_5|NZ_CP049936.1_4677379_4678345_+	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs	NA|160aa|up_4|NZ_CP049936.1_4678347_4678827_+	PRK15434, PRK15434, GDP-mannose mannosyl hydrolase	NA|479aa|up_3|NZ_CP049936.1_4680048_4681485_+	PRK15460, cpsB, mannose-1-phosphate guanyltransferase; Provisional	NA|457aa|up_2|NZ_CP049936.1_4681765_4683136_+	PRK15414, PRK15414, phosphomannomutase	NA|465aa|up_1|NZ_CP049936.1_4683271_4684666_+	PRK10124, PRK10124, putative UDP-glucose lipid carrier transferase; Provisional	NA|493aa|up_0|NZ_CP049936.1_4684667_4686146_+	PRK10459, PRK10459, MOP flippase family protein	NA|427aa|down_0|NZ_CP049936.1_4686421_4687702_+	TIGR04006, wcaK, colanic acid biosynthesis pyruvyl transferase WcaK	NA|407aa|down_1|NZ_CP049936.1_4687698_4688919_+	TIGR04005, wcaL, colanic acid biosynthesis glycosyltransferase WcaL	NA|465aa|down_2|NZ_CP049936.1_4688929_4690324_+	PRK10123, wcaM, putative colanic acid biosynthesis protein; Provisional	NA|298aa|down_3|NZ_CP049936.1_4690498_4691392_+	PRK10122, PRK10122, UTP--glucose-1-phosphate uridylyltransferase GalF	NA|298aa|down_4|NZ_CP049936.1_4693748_4694642_+	cd11301, Fut1_Fut2_like, Alpha-1,2-fucosyltransferase	NA|251aa|down_5|NZ_CP049936.1_4694666_4695419_+	cd04195, GT2_AmsE_like, GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis	NA|374aa|down_6|NZ_CP049936.1_4696622_4697744_+	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]	NA|322aa|down_7|NZ_CP049936.1_4697748_4698714_+	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs	NA|469aa|down_8|NZ_CP049936.1_4703389_4704796_+	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|389aa|down_9|NZ_CP049936.1_4705044_4706211_+	PRK15057, PRK15057, UDP-glucose 6-dehydrogenase; Provisional
