The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP049936	Escherichia coli strain JL05 chromosome, complete genome	4731796	1440226	1498202	4731796	terminase,tail,lysis,portal,head,integrase,capsid,tRNA,protease	Enterobacteria_phage(58.62%)	73	1439758:1439804	1487995:1488041
1439758:1439804	attL	AATGGCGCGCCCTGCAGGATTCGAACCTGCGGCCCACGACTTAGAAG	NA	NA	NA	NA
WP_001201825.1|1440226_1441180_+|protease	omptin family outer membrane protease OmpT	protease	NA	NA	NA	NA
WP_071790202.1|1441605_1442850_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_000937502.1|1443033_1443339_-|tail	tail fiber assembly protein	tail	K7PMH7	Enterobacteria_phage	76.5	2.8e-12
WP_072022911.1|1443403_1444063_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_120795384.1|1444428_1444542_+	Rac prophage; protein YnaM	NA	A0A1C9IHU6	Salmonella_phage	80.6	8.4e-07
WP_000836768.1|1444610_1444844_+	cold shock protein YdfK	NA	A0A192Y6D5	Salmonella_phage	88.3	1.1e-32
WP_000078177.1|1445160_1445751_+	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	38.8	1.6e-24
WP_000885616.1|1445848_1446424_-|tail	tail fiber assembly protein	tail	K7PMH7	Enterobacteria_phage	95.3	6.5e-103
WP_165746314.1|1446423_1449495_-|tail	phage tail protein	tail	U5N099	Enterobacteria_phage	55.4	8.6e-69
WP_165746315.1|1449559_1450159_-	Ail/Lom family outer membrane beta-barrel protein	NA	A5LH44	Enterobacteria_phage	96.5	1.2e-107
WP_165746316.1|1450229_1453727_-	host specificity protein J	NA	A0A291AWT4	Escherichia_phage	97.2	0.0e+00
WP_071704046.1|1453787_1454420_-|tail	tail assembly protein	tail	A0A2R9YJH6	Escherichia_phage	98.6	1.9e-95
WP_165746317.1|1454356_1455100_-|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	96.0	1.0e-145
WP_001152639.1|1455105_1455804_-|tail	phage minor tail protein L	tail	A0A0K2FJ01	Enterobacteria_phage	100.0	2.3e-134
WP_000847379.1|1455803_1456133_-|tail	phage tail protein	tail	A0A0K2FIE9	Enterobacteria_phage	100.0	9.6e-59
WP_000840244.1|1456129_1458691_-|tail	phage tail tape measure protein	tail	A0A0K2FI43	Enterobacteria_phage	99.5	0.0e+00
WP_000459457.1|1458683_1459118_-|tail	phage tail assembly protein T	tail	A0A0K2FJB3	Enterobacteria_phage	100.0	6.9e-65
WP_000479153.1|1459099_1459522_-|tail	phage minor tail protein G	tail	A0A0K2FIQ8	Enterobacteria_phage	100.0	6.7e-73
WP_001401350.1|1459537_1460278_-|tail	phage tail protein	tail	A0A0K2FJ05	Enterobacteria_phage	99.2	5.0e-132
WP_000683105.1|1460285_1460681_-|tail	tail protein	tail	A0A0K2FIF4	Enterobacteria_phage	100.0	1.0e-70
WP_000975081.1|1460677_1461256_-|tail	phage tail protein	tail	A0A2R9YJK4	Escherichia_phage	99.5	5.9e-80
WP_000785282.1|1461267_1461621_-|tail	tail attachment protein	tail	A0A2R9YJJ5	Escherichia_phage	97.4	6.4e-61
WP_000158875.1|1461632_1462028_-	DNA-packaging protein FI	NA	A0A2R9YJP4	Escherichia_phage	95.5	1.1e-58
WP_000063236.1|1462069_1463095_-|capsid	major capsid protein	capsid	C6ZCY2	Enterobacteria_phage	97.7	1.8e-188
WP_001358225.1|1463150_1463483_-|head	head decoration protein	head	A0A2R9YJN3	Escherichia_phage	98.2	2.5e-54
WP_000123248.1|1463492_1464812_-	S49 family peptidase	NA	A0A2I6TC87	Escherichia_phage	98.6	1.8e-233
WP_001358226.1|1464792_1466394_-|portal	phage portal protein	portal	A0A0K2FJC0	Enterobacteria_phage	99.8	8.8e-312
WP_000198149.1|1466390_1466597_-|head,tail	Lambda prophage-derived head-to-tail joining protein W	head,tail	A0A2R9YJL2	Escherichia_phage	100.0	5.8e-30
WP_001027292.1|1466593_1468519_-|terminase	phage terminase large subunit family protein	terminase	A0A0K2FJ14	Enterobacteria_phage	100.0	0.0e+00
WP_000453580.1|1468493_1469039_-	DNA-packaging protein	NA	A0A0K2FIG2	Enterobacteria_phage	100.0	2.8e-95
WP_165746318.1|1469428_1469623_+	DUF3950 domain-containing protein	NA	A0A0K2FIR8	Escherichia_phage	95.2	8.2e-26
WP_000738421.1|1469983_1470277_+	increased serum survival lipoprotein Iss	NA	K7PL54	Enterobacteria_phage	90.7	5.9e-44
WP_001228695.1|1470367_1470550_-|lysis	prophage lysis lipoprotein RzoD	lysis	K7PHU6	Enterobacteria_phage	98.3	2.9e-17
WP_001135277.1|1470766_1471264_-	lysozyme RrrD	NA	M1FJA0	Enterobacteria_phage	97.0	5.4e-90
WP_000839596.1|1471263_1471479_-|lysis	phage lysis protein EssD	lysis	A5LH82	Enterobacteria_phage	100.0	9.0e-34
WP_000737267.1|1472051_1473149_+	porin	NA	Q1MVN1	Enterobacteria_phage	76.5	1.6e-155
WP_074468224.1|1473328_1473712_-	antitermination protein QuuD	NA	A0A088CD47	Shigella_phage	84.2	5.2e-56
WP_097551430.1|1473797_1473938_-	YlcG family protein	NA	K7PHH3	Enterobacteria_phage	69.8	6.5e-09
WP_001635801.1|1473934_1474297_-	crossover junction endodeoxyribonuclease RusA	NA	K7PM48	Enterobacteria_phage	96.6	2.5e-60
WP_032176362.1|1474293_1474584_-	DUF1364 domain-containing protein	NA	K7PGZ6	Enterobacteria_phage	95.8	6.7e-48
WP_000224907.1|1474576_1474747_-	hypothetical protein	NA	K7P7K0	Enterobacteria_phage	67.9	5.3e-13
WP_165746319.1|1474746_1475202_-	DNA base-flipping protein YbcN	NA	I6PD71	Cronobacter_phage	68.2	3.7e-61
WP_072097617.1|1475198_1475300_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000520500.1|1475423_1475825_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038620.1|1475803_1476220_-	HEPN domain-containing protein	NA	NA	NA	NA	NA
WP_053901423.1|1476519_1477128_-	hypothetical protein	NA	Q9T1Q5	Acyrthosiphon_pisum_secondary_endosymbiont_phage	67.3	1.5e-33
WP_000152742.1|1477880_1478228_+	hypothetical protein	NA	NA	NA	NA	NA
WP_089632318.1|1478432_1479134_-	Replication protein P	NA	M1FJ72	Enterobacteria_phage	99.1	3.8e-129
WP_053274831.1|1479130_1480060_-	replication protein	NA	M1FN81	Enterobacteria_phage	67.6	8.0e-111
WP_001182872.1|1480146_1480686_-	hypothetical protein	NA	M9NZI6	Enterobacteria_phage	66.7	5.2e-62
WP_001067459.1|1480767_1480998_-	helix-turn-helix domain-containing protein	NA	A0A2H4FNF3	Salmonella_phage	68.0	8.5e-22
WP_046083248.1|1481036_1481792_+	helix-turn-helix transcriptional regulator	NA	Q76H56	Enterobacteria_phage	75.0	1.4e-92
WP_052728133.1|1481965_1482814_+	DUF3800 domain-containing protein	NA	A5X9G9	Aeromonas_virus	45.3	2.7e-57
WP_023148105.1|1483210_1483501_+	hypothetical protein	NA	K7P6H3	Enterobacteria_phage	85.1	5.0e-27
WP_000995439.1|1483576_1483873_+	host-nuclease inhibitor protein Gam	NA	A0A1I9LJN1	Stx_converting_phage	100.0	1.6e-49
WP_000100847.1|1483878_1484664_+	phage recombination protein Bet	NA	A0A1I9LJN0	Stx_converting_phage	100.0	6.3e-149
WP_000186776.1|1484660_1485341_+	YqaJ viral recombinase family protein	NA	A0A0P0ZCD4	Stx2-converting_phage	98.7	6.7e-131
WP_000149544.1|1485337_1485520_+	DUF1317 domain-containing protein	NA	A0A1U8QQC1	Enterobacteria_phage	96.7	6.9e-27
WP_000548530.1|1485492_1485684_+	DUF1382 family protein	NA	A0A0P0ZC67	Stx2-converting_phage	98.4	2.1e-26
WP_077252933.1|1485694_1485982_+	cell division protein ZapA	NA	A0A0P0ZE02	Stx2-converting_phage	98.9	5.6e-47
WP_000763385.1|1486074_1486293_+	TraR/DksA family transcriptional regulator	NA	M1FQT7	Enterobacteria_phage	100.0	7.5e-36
WP_000488407.1|1486340_1486619_+	DUF4222 domain-containing protein	NA	M1FPC8	Enterobacteria_phage	97.8	4.9e-48
WP_000051902.1|1486817_1487981_+|integrase	site-specific integrase	integrase	A0A088CD23	Shigella_phage	86.6	3.0e-200
WP_000805428.1|1488315_1488948_+	fimbria biosynthesis transcriptional regulator FimZ	NA	NA	NA	NA	NA
1487995:1488041	attR	AATGGCGCGCCCTGCAGGATTCGAACCTGCGGCCCACGACTTAGAAG	NA	NA	NA	NA
WP_001250422.1|1488950_1489466_-	fimbria assembly protein	NA	NA	NA	NA	NA
WP_165746320.1|1489476_1490484_-	type 1 fimbrin D-mannose specific adhesin FimH	NA	NA	NA	NA	NA
WP_001306954.1|1490496_1493106_-	fimbrial biogenesis usher protein	NA	NA	NA	NA	NA
WP_000988375.1|1493136_1493829_-	type 1 fimbria chaperone FimC	NA	NA	NA	NA	NA
WP_001315309.1|1494048_1494591_-	type 1 fimbrial protein subunit FimA	NA	NA	NA	NA	NA
WP_000729154.1|1495071_1495938_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	37.5	1.7e-30
WP_000190288.1|1495939_1496152_+	ribosome-associated protein YbcJ	NA	NA	NA	NA	NA
WP_001143552.1|1496259_1496781_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_000912345.1|1496816_1498202_-|tRNA	cysteine--tRNA ligase	tRNA	M1PG92	Moumouvirus	34.8	3.9e-45
>prophage 2
NZ_CP049936	Escherichia coli strain JL05 chromosome, complete genome	4731796	1769284	1834218	4731796	plate,integrase,transposase	Enterobacteria_phage(15.79%)	59	1778294:1778310	1798349:1798365
WP_164708657.1|1769284_1770498_-|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	98.0	5.1e-166
WP_106883827.1|1770658_1772764_-	injection protein	NA	A0A2I7QQN9	Vibrio_phage	37.0	1.2e-90
WP_001577239.1|1772763_1774185_-	phage DNA ejection protein	NA	B6SCW4	Bacteriophage	53.0	3.7e-123
WP_000909175.1|1774184_1774862_-	hypothetical protein	NA	Q2A0B2	Sodalis_phage	71.6	9.2e-56
WP_000420674.1|1774855_1775317_-	DUF2824 family protein	NA	Q2A0B3	Sodalis_phage	72.2	2.9e-61
WP_001018524.1|1775333_1775495_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001244106.1|1776079_1778836_-	DUF927 domain-containing protein	NA	A0A1W6JPG0	Morganella_phage	57.3	1.8e-299
1778294:1778310	attL	TTTATCCACCAGCGCCA	NA	NA	NA	NA
WP_001208877.1|1778822_1779194_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000628966.1|1779186_1779528_-	hypothetical protein	NA	A0A1B5FPL8	Escherichia_phage	61.5	2.5e-33
WP_001812772.1|1779538_1780141_-	hypothetical protein	NA	A0A286S1S7	Klebsiella_phage	36.3	3.3e-25
WP_000181940.1|1780133_1780355_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001024679.1|1780351_1780615_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001065661.1|1780611_1780806_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001812770.1|1780798_1781866_-	ash family protein	NA	NA	NA	NA	NA
WP_000476150.1|1781859_1782042_-	DUF4222 domain-containing protein	NA	NA	NA	NA	NA
WP_021530316.1|1782034_1782868_-	hypothetical protein	NA	G9L6G1	Escherichia_phage	47.5	5.3e-21
WP_000412531.1|1782880_1783312_-	hypothetical protein	NA	A0A1W6JPH9	Morganella_phage	49.7	2.3e-28
WP_000035054.1|1783311_1783515_-	AlpA family transcriptional regulator	NA	A0A1V0E8E5	Vibrio_phage	50.9	4.7e-08
WP_001577236.1|1783942_1785157_-|integrase	tyrosine-type recombinase/integrase	integrase	Q7M297	Enterobacteria_phage	56.5	1.3e-132
WP_000893255.1|1785512_1786766_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	47.2	5.8e-96
WP_001285288.1|1786777_1787881_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.1e-61
WP_000749882.1|1788168_1789224_+	phosphoporin PhoE	NA	Q1MVN1	Enterobacteria_phage	60.6	1.3e-117
WP_000174677.1|1789262_1789664_-	sigma factor-binding protein Crl	NA	NA	NA	NA	NA
WP_000189543.1|1789721_1790966_-	esterase FrsA	NA	NA	NA	NA	NA
WP_001291990.1|1791057_1791516_-	xanthine phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_001293016.1|1791776_1793234_+	cytosol nonspecific dipeptidase	NA	NA	NA	NA	NA
WP_000602112.1|1793290_1793905_-	peptide chain release factor H	NA	NA	NA	NA	NA
WP_000528869.1|1793901_1795041_-	RNA ligase RtcB family protein	NA	A0A222ZMP7	Mycobacterium_phage	31.7	2.0e-31
WP_001059855.1|1795286_1795739_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001226183.1|1795735_1796791_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_000207575.1|1796861_1797647_-	putative lateral flagellar export/assembly protein LafU	NA	NA	NA	NA	NA
WP_001296890.1|1797591_1799331_+	flagellar type III secretion system protein FlhA	NA	NA	NA	NA	NA
1798349:1798365	attR	TGGCGCTGGTGGATAAA	NA	NA	NA	NA
WP_000598760.1|1799435_1799714_+	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA	NA
WP_001030483.1|1799706_1800063_+	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA	NA
WP_000543895.1|1800119_1800893_-	C40 family peptidase	NA	A0A1V0DZX6	Clostridioides_phage	37.7	1.2e-19
WP_000729704.1|1801078_1801339_+	type II toxin-antitoxin system antitoxin DinJ	NA	NA	NA	NA	NA
WP_000615976.1|1801341_1801620_+	type II toxin-antitoxin system mRNA interferase toxin YafQ	NA	NA	NA	NA	NA
WP_001225679.1|1801775_1802516_+	murein L,D-transpeptidase	NA	NA	NA	NA	NA
WP_000333380.1|1802486_1803254_-	class II glutamine amidotransferase	NA	NA	NA	NA	NA
WP_000284050.1|1803459_1804038_-	D-sedoheptulose 7-phosphate isomerase	NA	A0A067XQR2	Caulobacter_phage	32.0	1.1e-14
WP_000973081.1|1804277_1806722_+	acyl-CoA dehydrogenase FadE	NA	NA	NA	NA	NA
WP_000532698.1|1806764_1807238_-	C-lysozyme inhibitor	NA	NA	NA	NA	NA
WP_001118038.1|1807391_1808162_+	2-oxoglutaramate amidase	NA	NA	NA	NA	NA
WP_122985282.1|1810649_1810835_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001513053.1|1810749_1811013_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071524591.1|1814954_1815197_-	DUF3969 family protein	NA	NA	NA	NA	NA
WP_000960006.1|1815414_1815867_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001101835.1|1817210_1817603_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165746325.1|1817580_1821813_-	RHS repeat protein	NA	A0A2H4JHK7	uncultured_Caudovirales_phage	43.1	3.8e-22
WP_001142958.1|1824237_1824756_-	Hcp family type VI secretion system effector	NA	NA	NA	NA	NA
WP_000037397.1|1825452_1825953_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_000123970.1|1825987_1826212_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000056978.1|1826262_1827738_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
WP_000611742.1|1827744_1828158_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_000393844.1|1828161_1830012_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_000348793.1|1829975_1831058_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_001113703.1|1831082_1832363_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA	NA
WP_001080149.1|1832359_1832884_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
WP_000246416.1|1832886_1834218_+|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
>prophage 3
NZ_CP049936	Escherichia coli strain JL05 chromosome, complete genome	4731796	3978022	4072965	4731796	tail,plate,lysis,transposase,portal,head,integrase,capsid,tRNA,terminase	Salmonella_phage(66.1%)	101	4024353:4024399	4061692:4061738
WP_000047176.1|3978022_3980653_+|tRNA	alanine--tRNA ligase	tRNA	A0A2K9L1X7	Tupanvirus	38.6	5.5e-80
WP_000906486.1|3980887_3981073_+	carbon storage regulator CsrA	NA	A0A2I7RT00	Vibrio_phage	66.7	4.9e-12
WP_000273309.1|3982664_3983231_+	fructose-1-phosphate/6-phosphogluconate phosphatase	NA	NA	NA	NA	NA
WP_001287457.1|3983227_3983656_+	DedA family protein	NA	NA	NA	NA	NA
WP_000611802.1|3983728_3985285_+	glutamate--cysteine ligase	NA	NA	NA	NA	NA
WP_001130211.1|3985434_3985950_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA	NA
WP_001295176.1|3986013_3987552_-	multidrug efflux MFS transporter permease subunit EmrB	NA	NA	NA	NA	NA
WP_001295175.1|3987568_3988741_-	multidrug efflux MFS transporter periplasmic adaptor subunit EmrA	NA	NA	NA	NA	NA
WP_000378442.1|3988867_3989398_-	multidrug efflux transporter EmrAB transcriptional repressor EmrR	NA	NA	NA	NA	NA
WP_048265082.1|3989368_3989470_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000119763.1|3989488_3989824_-	L-valine transporter subunit YgaH	NA	NA	NA	NA	NA
WP_000445658.1|3989813_3990551_-	L-valine exporter subunit YgaZ	NA	NA	NA	NA	NA
WP_000165699.1|3990674_3991859_-	MFS transporter	NA	NA	NA	NA	NA
WP_001216527.1|3992149_3993142_-	glycine betaine/L-proline ABC transporter substrate-binding protein ProX	NA	NA	NA	NA	NA
WP_000774978.1|3993198_3994263_-	glycine betaine/L-proline ABC transporter permease ProW	NA	NA	NA	NA	NA
WP_000985494.1|3994255_3995458_-	glycine betaine/L-proline ABC transporter ATP-binding protein ProV	NA	G3M9Y6	Bacillus_virus	39.4	4.9e-28
WP_000777969.1|3995812_3996772_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	R4TBI6	Mycobacterium_phage	71.8	3.5e-133
WP_000246542.1|3996781_3998926_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	48.4	3.8e-196
WP_000080944.1|3998898_3999309_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A142F1R4	Bacillus_phage	44.4	2.7e-18
WP_001223235.1|3999305_3999551_-	glutaredoxin-like protein NrdH	NA	Q5K5J3	Oenococcus_phage	35.3	2.4e-06
WP_001295174.1|3999798_4000128_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_000281320.1|4000279_4000624_+	YgaC family protein	NA	NA	NA	NA	NA
WP_000492656.1|4000660_4001110_-	L-alanine exporter AlaE	NA	NA	NA	NA	NA
WP_000115383.1|4001777_4002182_+	DNA-binding protein StpA	NA	NA	NA	NA	NA
WP_001229470.1|4002228_4002753_-	thiosulfate sulfurtransferase YgaP	NA	NA	NA	NA	NA
WP_000137280.1|4002762_4003062_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000508177.1|4003244_4003403_+	YqaE/Pmp3 family membrane protein	NA	NA	NA	NA	NA
WP_000522424.1|4003486_4003936_+	potassium binding protein Kbp	NA	A0A090DBR9	Clostridium_phage	39.5	2.0e-06
WP_000156811.1|4003936_4004599_-	DNA-binding transcriptional regulator CsiR	NA	NA	NA	NA	NA
WP_001295173.1|4004619_4006020_-	GABA permease	NA	NA	NA	NA	NA
WP_000772848.1|4007549_4008998_-	NADP-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000271957.1|4009020_4010289_-	L-2-hydroxyglutarate oxidase	NA	NA	NA	NA	NA
WP_001315804.1|4010308_4011286_-	carbon starvation induced protein CsiD	NA	NA	NA	NA	NA
WP_000340076.1|4017015_4017204_+	hypothetical protein	NA	A0A1S6L009	Salmonella_phage	69.2	9.1e-06
WP_001120794.1|4017358_4017478_+	hypothetical protein	NA	NA	NA	NA	NA
WP_085950812.1|4017982_4019196_-|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	56.8	2.4e-99
WP_085951104.1|4019255_4020418_-|transposase	IS3-like element IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	40.2	2.6e-50
WP_001317263.1|4021674_4022769_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000113815.1|4022907_4024149_-|integrase	integrase	integrase	A0A1B5FPC6	Escherichia_phage	47.3	4.5e-101
4024353:4024399	attL	TTTGGTGGAGCTGGCGGGAGTTGAACCCGCGTCCGAAATTCCTACAT	NA	NA	NA	NA
WP_024143611.1|4024484_4025711_-	hypothetical protein	NA	E5G6K9	Salmonella_phage	49.7	2.1e-111
WP_165746358.1|4025714_4026737_-|integrase	site-specific integrase	integrase	A0A1S6L016	Salmonella_phage	92.9	2.9e-186
WP_165746359.1|4026739_4027372_-	phage repressor protein	NA	A0A1S6KZZ7	Salmonella_phage	52.4	2.8e-59
WP_000102105.1|4027493_4027736_+	Rha family transcriptional regulator	NA	A0A1S6KZZ6	Salmonella_phage	97.5	6.8e-38
WP_020937144.1|4027768_4028278_+	phage regulatory CII family protein	NA	E5G6L3	Salmonella_phage	95.9	5.1e-83
WP_000956182.1|4028285_4028486_+	DUF2724 domain-containing protein	NA	E5G6L4	Salmonella_phage	98.5	7.1e-33
WP_001311552.1|4028449_4028791_+	DUF5347 domain-containing protein	NA	E5G6L5	Salmonella_phage	98.2	1.7e-55
WP_020937143.1|4028857_4029091_+	DUF2732 family protein	NA	E5G6L6	Salmonella_phage	97.4	4.1e-32
WP_000752613.1|4029090_4029318_+	TraR/DksA family transcriptional regulator	NA	E5G6L7	Salmonella_phage	100.0	2.7e-36
WP_165746360.1|4029314_4030172_+	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	96.8	3.0e-160
WP_165746361.1|4030168_4032583_+	replication endonuclease	NA	E5G6L9	Salmonella_phage	98.3	0.0e+00
WP_001154434.1|4032735_4032924_+	hypothetical protein	NA	E5G6M0	Salmonella_phage	98.4	5.5e-27
WP_001217575.1|4032934_4033168_+	DinI family protein	NA	E5G6M1	Salmonella_phage	100.0	4.7e-36
WP_000834899.1|4033327_4033753_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001726289.1|4035869_4036898_-|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	88.2	8.4e-170
WP_001726288.1|4036897_4038664_-|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	99.5	0.0e+00
WP_024242288.1|4038806_4039640_+|capsid	GPO family capsid scaffolding protein	capsid	A0A1S6KZW9	Salmonella_phage	90.6	1.1e-122
WP_000742511.1|4039656_4040715_+|capsid	phage major capsid protein, P2 family	capsid	E5G6M6	Salmonella_phage	93.4	2.9e-181
WP_000059191.1|4040718_4041369_+|terminase	terminase endonuclease subunit	terminase	E5G6M7	Salmonella_phage	96.3	8.7e-112
WP_000673523.1|4041464_4041929_+|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	89.6	6.4e-77
WP_000868175.1|4041928_4042132_+|tail	tail protein X	tail	E5G6M9	Salmonella_phage	92.5	1.4e-31
WP_000171568.1|4042135_4042351_+	hypothetical protein	NA	E5G6N0	Salmonella_phage	80.3	1.8e-26
WP_001069905.1|4042331_4042844_+	lysozyme	NA	E5G6N1	Salmonella_phage	92.3	3.1e-88
WP_000727849.1|4042845_4043223_+	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	39.2	5.1e-16
WP_001504068.1|4043219_4043648_+|lysis	LysB family phage lysis regulatory protein	lysis	E5G6N2	Salmonella_phage	75.4	4.9e-47
WP_165746362.1|4043743_4044175_+|tail	phage tail protein	tail	E5G6N3	Salmonella_phage	93.7	2.9e-71
WP_000829127.1|4044167_4044614_+	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	85.6	6.6e-63
WP_001552634.1|4044682_4045261_+|plate	phage baseplate assembly protein V	plate	A0A1S6KZX7	Salmonella_phage	87.5	1.1e-94
WP_053887068.1|4045257_4045617_+|plate	baseplate assembly protein	plate	A0A1S6KZZ4	Salmonella_phage	84.9	3.6e-51
WP_165746363.1|4045603_4046512_+|plate	baseplate assembly protein	plate	A0A1S6KZY6	Salmonella_phage	90.7	9.2e-144
WP_001086820.1|4046504_4047110_+|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	92.5	5.2e-111
WP_165746364.1|4047106_4048666_+|tail	phage tail protein	tail	M1TAS6	Escherichia_phage	70.6	3.3e-202
WP_000099202.1|4048746_4050285_-|transposase	IS66-like element ISEc22 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	99.4	1.3e-294
WP_000612626.1|4050333_4050681_-	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZDM8	Stx2-converting_phage	100.0	2.6e-62
WP_000839181.1|4050677_4051082_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZCV4	Stx2-converting_phage	99.3	1.1e-69
WP_165746384.1|4051163_4051730_+|tail	tail fiber assembly protein	tail	Q9MCR5	Enterobacteria_phage	89.3	6.6e-92
WP_115200365.1|4051701_4052127_-|tail	phage tail protein	tail	A0A0F7LDZ0	Escherichia_phage	61.9	2.1e-34
WP_077775464.1|4052123_4052525_-|tail	phage tail protein	tail	F1BUP1	Erwinia_phage	38.4	4.5e-10
WP_165746365.1|4052552_4053119_+	recombinase family protein	NA	A0A1S6L009	Salmonella_phage	84.2	3.2e-86
WP_165746366.1|4053261_4054434_+|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	90.3	1.0e-203
WP_001207660.1|4054443_4054959_+|tail	phage major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.3	2.1e-89
WP_001281009.1|4055013_4055316_+|tail	phage tail assembly protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	5.3e-40
WP_000763311.1|4055330_4055450_+|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	87.2	2.8e-13
WP_165746367.1|4055442_4058520_+|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	67.3	0.0e+00
WP_000980394.1|4058516_4059002_+|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	81.2	1.7e-67
WP_165746368.1|4058998_4060099_+	phage late control D family protein	NA	A0A1S6KZZ5	Salmonella_phage	88.0	1.0e-176
WP_000972389.1|4060189_4060408_+	transcriptional activator Ogr/delta	NA	Q53ZE7	Salmonella_virus	71.9	1.9e-18
WP_000380485.1|4060669_4060843_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000151542.1|4060811_4061585_+	reverse transcriptase	NA	NA	NA	NA	NA
WP_000162574.1|4062270_4062753_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	46.8	4.0e-29
4061692:4061738	attR	TTTGGTGGAGCTGGCGGGAGTTGAACCCGCGTCCGAAATTCCTACAT	NA	NA	NA	NA
WP_000600190.1|4062884_4063361_+	type II toxin-antitoxin system toxin RatA	NA	NA	NA	NA	NA
WP_001117838.1|4063350_4063641_+	RnfH family protein	NA	NA	NA	NA	NA
WP_001203437.1|4063702_4064044_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
WP_000880910.1|4064192_4065854_-	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_001059169.1|4065939_4066818_-	NAD(+) kinase	NA	NA	NA	NA	NA
WP_001296310.1|4066940_4067534_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_010723175.1|4067588_4068875_-	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_001189260.1|4068895_4069762_-	inner membrane protein YpjD	NA	NA	NA	NA	NA
WP_000460035.1|4069853_4071215_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_000256450.1|4071351_4071600_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_000043335.1|4071618_4072167_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_000264777.1|4072197_4072965_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
>prophage 4
NZ_CP049936	Escherichia coli strain JL05 chromosome, complete genome	4731796	4587823	4597265	4731796		Enterobacteria_phage(85.71%)	10	NA	NA
WP_000569325.1|4587823_4588750_+	glycine betaine ABC transporter ATP binding protein YehX	NA	G3M9Y6	Bacillus_virus	30.8	2.8e-23
WP_000783120.1|4588754_4589486_+	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA	NA
WP_001216963.1|4589466_4589574_-	protein YohO	NA	NA	NA	NA	NA
WP_001240401.1|4589633_4590365_-	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	99.5	9.7e-112
WP_001295431.1|4590586_4592272_+	two-component regulatory system sensor histidine kinase BtsS	NA	Q9EYF3	Enterobacteria_phage	99.6	2.5e-304
WP_000598641.1|4592268_4592988_+	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_001295430.1|4593034_4593505_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	100.0	1.8e-82
WP_001295429.1|4593545_4594007_-	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	100.0	1.9e-76
WP_001317947.1|4594131_4596132_-	hypothetical protein	NA	Q9EYF6	Enterobacteria_phage	96.1	0.0e+00
WP_001292774.1|4596128_4597265_-	VWA domain-containing protein	NA	Q9EYF7	Enterobacteria_phage	97.7	1.1e-162
>prophage 1
NZ_CP049937	Escherichia coli strain JL05 plasmid pARG01, complete sequence	127295	8135	22206	127295	integrase,transposase,protease	Escherichia_phage(42.86%)	17	8073:8132	12608:13428
8073:8132	attL	GGCACTGTTGCAAATAGTCGGTGGTGATAAACTTATCATCCCCTTTTGCTGATGGAGCTG	NA	NA	NA	NA
WP_001067858.1|8135_8840_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	99.6	1.2e-138
WP_001389366.1|9395_9869_-	trimethoprim-resistant dihydrofolate reductase DfrA17	NA	A0A1B2IAU3	Erwinia_phage	34.6	1.3e-16
WP_000845048.1|10026_11040_+|integrase	class 1 integron integrase IntI1	integrase	A0A1P8DJJ6	Virus_Rctr41k	45.5	1.0e-71
WP_000454193.1|11242_11593_+	DUF3330 domain-containing protein	NA	NA	NA	NA	NA
WP_071889079.1|11718_12009_+	recombinase family protein	NA	NA	NA	NA	NA
WP_001067858.1|11899_12604_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	99.6	1.2e-138
WP_000027057.1|13227_14088_+	class A broad-spectrum beta-lactamase TEM-1	NA	Q1MVP3	Enterobacteria_phage	100.0	4.6e-161
12608:13428	attR	CAGCTCCATCAGCAAAAGGGGATGATAAGTTTATCACCACCGACTATTTGCAACAGTGCCATTCTGGTTAAGAAGCTCGACCGTCTTGGCCGCGACACTGCCGATATGATCCAACTGATAAAGGAATTTGACGCTCAGGGCGTGGCAGTCCGGTTCATTGATGACGGGATCAGTACCGACGGTGATATGGGGCAAATGGTGGTCACCATCCTGTCGGCTGTGGCACAGGCTGAACGCCGGAGGATCCTAGAACGCACGAATGAGGGCCGACAGGAAGCAAAGCTGAAAGGAATCAAATTTGGCCGCAGGCGTACCGTGGACAGGAACGTCGTGCTGACGCTTCATCAGAAGGGCACTGGTGCAACGGAAATTGCTCATCAGCTCAGTATTGCCCGCTCCACGGTTTATAAAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGATAATAATGGTTTCTTAGACGTCAGGTGGCACTTTTCGGGGAAATGTGCGCGGAACCCCTATTTGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTCATGAGACAATAACCCTGGTAAATGCTTCAATAATATTGAAAAAGGAAGAGTATGAGTATTCAACATTTTCGTGTCGCCCTTATTCCCTTTTTTGCGGCATTTTGCCTTCCTGTTTTTGCTCACCCAGAAACGCTGGTGAAAGTAAAAGATGCTGAAGATCAGTTGGGTGCACGAGTGGGTTACATCGAACTGGATCTCAACAGCGGTAAGATCCTTGAGAGTTTTCGCCCCGAAGAACGTTTTCCAATGATG	NA	NA	NA	NA
WP_001043260.1|14332_15148_+	sulfonamide-resistant dihydropteroate synthase Sul2	NA	A0A0B5J4J5	Pandoravirus	27.6	5.9e-09
WP_001145207.1|15252_16011_+	APH(3'') family aminoglycoside O-phosphotransferase	NA	NA	NA	NA	NA
WP_000480968.1|16010_16847_+	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA	NA
WP_000844627.1|17233_17476_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_031606906.1|17507_18134_-	tetracycline resistance transcriptional repressor TetR(A)	NA	NA	NA	NA	NA
WP_025732387.1|18239_19439_+	tetracycline efflux MFS transporter Tet(A)	NA	NA	NA	NA	NA
WP_001067858.1|20047_20752_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	99.6	1.2e-138
WP_001398199.1|20868_21270_-	type II toxin-antitoxin system toxin endoribonuclease PemK	NA	NA	NA	NA	NA
WP_000557619.1|21202_21460_-	type II toxin-antitoxin system antitoxin PemI	NA	NA	NA	NA	NA
WP_000616807.1|21552_22206_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
