assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_011386925.1_ASM1138692v1	NZ_CP049956	Stenotrophomonas maltophilia strain NCTC10498 chromosome, complete genome	1	1809167-1809273	1	CRISPRCasFinder	no		DEDDh,csa3,WYL,PD-DExK,cas3,Cas9_archaeal,DinG	Orphan	ATCCACGCATGGCGTGGATCTACC	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,PD-DExK,cas3,Cas9_archaeal,DinG	NA|113aa|up_4|NZ_CP049956.1_1800089_1800428_+,NA|72aa|down_0|NZ_CP049956.1_1809912_1810128_-,NA|157aa|down_5|NZ_CP049956.1_1813849_1814320_-,NA|128aa|down_9|NZ_CP049956.1_1818208_1818592_-	NA|136aa|up_9|NZ_CP049956.1_1796884_1797292_-	PRK12629, flgC, flagellar basal body rod protein FlgC; Provisional	NA|132aa|up_8|NZ_CP049956.1_1797295_1797691_-	PRK12620, flgB, flagellar basal body rod protein FlgB; Provisional	NA|315aa|up_7|NZ_CP049956.1_1797828_1798773_-	cd19924, REC_CheV-like, phosphoacceptor receiver (REC) domain of chemotaxis protein CheV and similar proteins	NA|219aa|up_6|NZ_CP049956.1_1799055_1799712_+	PRK12617, flgA, flagellar basal body P-ring formation protein FlgA	NA|102aa|up_5|NZ_CP049956.1_1799787_1800093_+	TIGR03824, FlgM_jcvi, flagellar biosynthesis anti-sigma factor FlgM	NA|113aa|up_4|NZ_CP049956.1_1800089_1800428_+	NA	NA|406aa|up_3|NZ_CP049956.1_1800519_1801737_+	cd16943, HATPase_AtoS-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli K-12 AtoS	NA|591aa|up_2|NZ_CP049956.1_1802355_1804128_-	cd01948, EAL, EAL domain	NA|701aa|up_1|NZ_CP049956.1_1804132_1806235_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|920aa|up_0|NZ_CP049956.1_1806366_1809126_+	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase	NA|72aa|down_0|NZ_CP049956.1_1809912_1810128_-	NA	NA|397aa|down_1|NZ_CP049956.1_1810226_1811417_-	cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP), signaling domain	NA|205aa|down_2|NZ_CP049956.1_1811636_1812251_-	PRK00218, PRK00218, lysogenization regulator HflD	NA|381aa|down_3|NZ_CP049956.1_1812247_1813390_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|154aa|down_4|NZ_CP049956.1_1813386_1813848_-	cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function	NA|157aa|down_5|NZ_CP049956.1_1813849_1814320_-	NA	NA|109aa|down_6|NZ_CP049956.1_1814432_1814759_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|271aa|down_7|NZ_CP049956.1_1814893_1815706_-	COG3570, StrB, Streptomycin 6-kinase [Defense mechanisms]	NA|762aa|down_8|NZ_CP049956.1_1815844_1818130_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|128aa|down_9|NZ_CP049956.1_1818208_1818592_-	NA
GCF_011386925.1_ASM1138692v1	NZ_CP049956	Stenotrophomonas maltophilia strain NCTC10498 chromosome, complete genome	2	1814803-1814885	2	CRISPRCasFinder	no		DEDDh,csa3,WYL,PD-DExK,cas3,Cas9_archaeal,DinG	Orphan	GTGCCCACCAAGGTGGGCACCTACCAAG	28	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,PD-DExK,cas3,Cas9_archaeal,DinG	NA|169aa|up_7|NZ_CP049956.1_1809268_1809775_-,NA|72aa|up_6|NZ_CP049956.1_1809912_1810128_-,NA|157aa|up_1|NZ_CP049956.1_1813849_1814320_-,NA|128aa|down_2|NZ_CP049956.1_1818208_1818592_-,NA|423aa|down_5|NZ_CP049956.1_1819910_1821179_+	NA|701aa|up_9|NZ_CP049956.1_1804132_1806235_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|920aa|up_8|NZ_CP049956.1_1806366_1809126_+	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase	NA|169aa|up_7|NZ_CP049956.1_1809268_1809775_-	NA	NA|72aa|up_6|NZ_CP049956.1_1809912_1810128_-	NA	NA|397aa|up_5|NZ_CP049956.1_1810226_1811417_-	cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP), signaling domain	NA|205aa|up_4|NZ_CP049956.1_1811636_1812251_-	PRK00218, PRK00218, lysogenization regulator HflD	NA|381aa|up_3|NZ_CP049956.1_1812247_1813390_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|154aa|up_2|NZ_CP049956.1_1813386_1813848_-	cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function	NA|157aa|up_1|NZ_CP049956.1_1813849_1814320_-	NA	NA|109aa|up_0|NZ_CP049956.1_1814432_1814759_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|271aa|down_0|NZ_CP049956.1_1814893_1815706_-	COG3570, StrB, Streptomycin 6-kinase [Defense mechanisms]	NA|762aa|down_1|NZ_CP049956.1_1815844_1818130_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|128aa|down_2|NZ_CP049956.1_1818208_1818592_-	NA	NA|73aa|down_3|NZ_CP049956.1_1818792_1819011_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|247aa|down_4|NZ_CP049956.1_1819097_1819838_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|423aa|down_5|NZ_CP049956.1_1819910_1821179_+	NA	NA|375aa|down_6|NZ_CP049956.1_1821286_1822411_-	pfam04339, FemAB_like, Peptidogalycan biosysnthesis/recognition	NA|324aa|down_7|NZ_CP049956.1_1822513_1823485_-	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|787aa|down_8|NZ_CP049956.1_1823718_1826079_+	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|648aa|down_9|NZ_CP049956.1_1826118_1828062_+	pfam12969, DUF3857, Domain of Unknown Function with PDB structure (DUF3857)
GCF_011386925.1_ASM1138692v1	NZ_CP049956	Stenotrophomonas maltophilia strain NCTC10498 chromosome, complete genome	3	2111776-2112016	1	PILER-CR	no		DEDDh,csa3,WYL,PD-DExK,cas3,Cas9_archaeal,DinG	Orphan	CTGAGGCTGGCCCAGCCATCCACGCATGGCGTGGATCTACTGCCGAGCGGCTTCTACTGCCCG	63	0	0	NA	NA	NA	2	2	Orphan	DEDDh,csa3,WYL,PD-DExK,cas3,Cas9_archaeal,DinG	NA|112aa|up_4|NZ_CP049956.1_2109309_2109645_+,NA|150aa|up_3|NZ_CP049956.1_2109775_2110225_-,NA|195aa|down_9|NZ_CP049956.1_2134636_2135221_-	NA|582aa|up_9|NZ_CP049956.1_2102751_2104497_-	pfam16930, Porin_5, Putative porin	NA|222aa|up_8|NZ_CP049956.1_2104539_2105205_-	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]	NA|138aa|up_7|NZ_CP049956.1_2105244_2105658_-	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion]	NA|595aa|up_6|NZ_CP049956.1_2105668_2107453_-	COG5306, COG5306, Uncharacterized conserved protein [Function unknown]	NA|539aa|up_5|NZ_CP049956.1_2107491_2109108_-	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion]	NA|112aa|up_4|NZ_CP049956.1_2109309_2109645_+	NA	NA|150aa|up_3|NZ_CP049956.1_2109775_2110225_-	NA	NA|149aa|up_2|NZ_CP049956.1_2110340_2110787_+	TIGR01708, Type_II_secretion_system_protein_H, type II secretion system protein H	NA|121aa|up_1|NZ_CP049956.1_2110783_2111146_+	TIGR01707, Type_II_secretion_system_protein_I, type II secretion system protein I	NA|205aa|up_0|NZ_CP049956.1_2111142_2111757_+	COG4795, PulJ, Type II secretory pathway, component PulJ [Intracellular trafficking and secretion]	NA|4128aa|down_0|NZ_CP049956.1_2112316_2124700_-	pfam12545, DUF3739, Filamentous haemagglutinin family outer membrane protein	NA|392aa|down_1|NZ_CP049956.1_2124899_2126075_-	cd13565, PBP2_PstS, Substrate binding domain of ABC-type phosphate transporter, a member of the type 2 periplasmic-binding fold superfamily	NA|400aa|down_2|NZ_CP049956.1_2126527_2127727_-	TIGR02120, Putative_general_secretion_pathway_protein_F, type II secretion system protein F	NA|478aa|down_3|NZ_CP049956.1_2127734_2129168_-	TIGR02533, Type_II_secretion_system_protein_E, type II secretion system protein E	NA|794aa|down_4|NZ_CP049956.1_2129164_2131546_-	TIGR02517, Putative_type_II_secretion_system_protein_D, type II secretion system protein D	NA|176aa|down_5|NZ_CP049956.1_2131542_2132070_-	pfam04612, T2SSM, Type II secretion system (T2SS), protein M	NA|388aa|down_6|NZ_CP049956.1_2132066_2133230_-	TIGR01709, Type_II_secretion_system_protein_L, type II secretion system protein L	NA|302aa|down_7|NZ_CP049956.1_2133226_2134132_-	pfam03934, T2SSK, Type II secretion system (T2SS), protein K	NA|146aa|down_8|NZ_CP049956.1_2134141_2134579_-	TIGR01710, Type_II_secretion_system_protein_G, type II secretion system protein G	NA|195aa|down_9|NZ_CP049956.1_2134636_2135221_-	NA
GCF_011386925.1_ASM1138692v1	NZ_CP049956	Stenotrophomonas maltophilia strain NCTC10498 chromosome, complete genome	4	2994680-2994784	3	CRISPRCasFinder	no		DEDDh,csa3,WYL,PD-DExK,cas3,Cas9_archaeal,DinG	Orphan	CGGTCGTGCCGGCCGCTGGCCGGCAAT	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,PD-DExK,cas3,Cas9_archaeal,DinG	NA|186aa|up_6|NZ_CP049956.1_2987483_2988041_+,NA|97aa|up_5|NZ_CP049956.1_2988055_2988346_+,NA|221aa|up_1|NZ_CP049956.1_2992374_2993037_-,NA	NA|697aa|up_9|NZ_CP049956.1_2983988_2986079_+	PRK11249, katE, hydroperoxidase II; Provisional	NA|164aa|up_8|NZ_CP049956.1_2986101_2986593_+	PRK14900, valS, valyl-tRNA synthetase; Provisional	NA|247aa|up_7|NZ_CP049956.1_2986602_2987343_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|186aa|up_6|NZ_CP049956.1_2987483_2988041_+	NA	NA|97aa|up_5|NZ_CP049956.1_2988055_2988346_+	NA	NA|709aa|up_4|NZ_CP049956.1_2988435_2990562_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|321aa|up_3|NZ_CP049956.1_2990794_2991757_+	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD	NA|226aa|up_2|NZ_CP049956.1_2991761_2992439_+	pfam01551, Peptidase_M23, Peptidase family M23	NA|221aa|up_1|NZ_CP049956.1_2992374_2993037_-	NA	NA|431aa|up_0|NZ_CP049956.1_2993154_2994447_-	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|62aa|down_0|NZ_CP049956.1_2994818_2995004_-	COG3242, COG3242, Uncharacterized protein conserved in bacteria [Function unknown]	NA|288aa|down_1|NZ_CP049956.1_2995071_2995935_-	cd03405, SPFH_HflC, High frequency of lysogenization C (HflC) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|378aa|down_2|NZ_CP049956.1_2995931_2997065_-	cd03404, SPFH_HflK, High frequency of lysogenization K (HflK) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|332aa|down_3|NZ_CP049956.1_2997218_2998214_+	cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putative quinone oxidoreductases	NA|124aa|down_4|NZ_CP049956.1_2998302_2998674_+	cd17538, REC_D1_PleD-like, first (D1) phosphoacceptor receiver (REC) domain of response regulator PleD and similar domains	NA|298aa|down_5|NZ_CP049956.1_2998762_2999656_-	PRK10266, PRK10266, curved DNA-binding protein	NA|161aa|down_6|NZ_CP049956.1_2999916_3000399_+	cd03013, PRX5_like, Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol	NA|192aa|down_7|NZ_CP049956.1_3000428_3001004_+	COG2193, Bfr, Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism]	NA|794aa|down_8|NZ_CP049956.1_3001076_3003458_-	COG4953, PbpC, Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell envelope biogenesis, outer membrane]	NA|1636aa|down_9|NZ_CP049956.1_3003522_3008430_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]
GCF_011386925.1_ASM1138692v1	NZ_CP049956	Stenotrophomonas maltophilia strain NCTC10498 chromosome, complete genome	5	3210183-3210296	4	CRISPRCasFinder	no		DEDDh,csa3,WYL,PD-DExK,cas3,Cas9_archaeal,DinG	Orphan	TTGGGTAGGTGCGGACCGTTGGTCCGCAC	29	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,PD-DExK,cas3,Cas9_archaeal,DinG	NA,NA	NA|267aa|up_9|NZ_CP049956.1_3195110_3195911_+	pfam06629, MipA, MltA-interacting protein MipA	NA|862aa|up_8|NZ_CP049956.1_3195983_3198569_-	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB	NA|274aa|up_7|NZ_CP049956.1_3198750_3199572_-	pfam11219, DUF3014, Protein of unknown function (DUF3014)	NA|237aa|up_6|NZ_CP049956.1_3199742_3200453_+	pfam14497, GST_C_3, Glutathione S-transferase, C-terminal domain	NA|535aa|up_5|NZ_CP049956.1_3200532_3202137_-	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|451aa|up_4|NZ_CP049956.1_3202735_3204087_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|573aa|up_3|NZ_CP049956.1_3204302_3206021_-	PRK09124, PRK09124, ubiquinone-dependent pyruvate dehydrogenase	NA|286aa|up_2|NZ_CP049956.1_3206150_3207008_-	pfam08239, SH3_3, Bacterial SH3 domain	NA|161aa|up_1|NZ_CP049956.1_3207044_3207527_-	pfam12098, DUF3574, Protein of unknown function (DUF3574)	NA|812aa|up_0|NZ_CP049956.1_3207741_3210177_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|253aa|down_0|NZ_CP049956.1_3210413_3211172_+	cd01627, HAD_TPP, trehalose-phosphate phosphatase similar to Escherichia coli trehalose-6-phosphate phosphatase OtsB and Saccharomyces cerevisiae trehalose-phosphatase TPS2	NA|594aa|down_1|NZ_CP049956.1_3211213_3212995_+	COG3387, SGA1, Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]	NA|455aa|down_2|NZ_CP049956.1_3212991_3214356_+	TIGR02400, Alphaalpha-trehalose-phosphate_synthase, alpha,alpha-trehalose-phosphate synthase [UDP-forming]	NA|146aa|down_3|NZ_CP049956.1_3214428_3214866_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|175aa|down_4|NZ_CP049956.1_3214840_3215365_-	pfam13761, DUF4166, Domain of unknown function (DUF4166)	NA|257aa|down_5|NZ_CP049956.1_3215367_3216138_-	PRK10723, PRK10723, polyphenol oxidase	NA|330aa|down_6|NZ_CP049956.1_3216137_3217127_-	PRK11180, rluD, 23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA|296aa|down_7|NZ_CP049956.1_3217240_3218128_+	TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO	NA|401aa|down_8|NZ_CP049956.1_3218318_3219521_+	pfam03583, LIP, Secretory lipase	NA|545aa|down_9|NZ_CP049956.1_3219939_3221574_-	PRK13981, PRK13981, NAD synthetase; Provisional
GCF_011386925.1_ASM1138692v1	NZ_CP049956	Stenotrophomonas maltophilia strain NCTC10498 chromosome, complete genome	6	3332728-3332840	5	CRISPRCasFinder	no		DEDDh,csa3,WYL,PD-DExK,cas3,Cas9_archaeal,DinG	Orphan	GCGTGCCAACCAAGGTTGGCACCTACCGAAGGCGGGTGCGG	41	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,PD-DExK,cas3,Cas9_archaeal,DinG	NA|215aa|up_7|NZ_CP049956.1_3319777_3320422_+,NA|248aa|up_6|NZ_CP049956.1_3320598_3321342_-,NA	NA|353aa|up_9|NZ_CP049956.1_3315865_3316924_-	pfam11104, PilM_2, Type IV pilus assembly protein PilM;	NA|808aa|up_8|NZ_CP049956.1_3317143_3319567_+	COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane]	NA|215aa|up_7|NZ_CP049956.1_3319777_3320422_+	NA	NA|248aa|up_6|NZ_CP049956.1_3320598_3321342_-	NA	NA|1460aa|up_5|NZ_CP049956.1_3321411_3325791_-	cd12820, LbR_YadA-like, YadA-like, left-handed beta-roll	NA|236aa|up_4|NZ_CP049956.1_3325859_3326567_-	PRK15308, PRK15308, fimbrial protein TcfA	NA|380aa|up_3|NZ_CP049956.1_3326583_3327723_-	pfam07434, CblD, CblD like pilus biogenesis initiator	NA|910aa|up_2|NZ_CP049956.1_3327719_3330449_-	PRK15310, PRK15310, fimbrial outer membrane usher protein TcfC; Provisional	NA|166aa|up_1|NZ_CP049956.1_3330508_3331006_-	pfam04449, Fimbrial_CS1, CS1 type fimbrial major subunit	NA|363aa|up_0|NZ_CP049956.1_3331525_3332614_-	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|426aa|down_0|NZ_CP049956.1_3332979_3334257_-	PRK05614, gltA, citrate synthase	NA|81aa|down_1|NZ_CP049956.1_3334553_3334796_-	PRK01678, rpmE2, type B 50S ribosomal protein L31	NA|313aa|down_2|NZ_CP049956.1_3334884_3335823_-	cd02649, nuc_hydro_CeIAG, nuc_hydro_CeIAG: Nucleoside hydrolases similar to the inosine-adenosine-guanosine-preferring nucleoside hydrolase from Caenorhabditis elegans	NA|704aa|down_3|NZ_CP049956.1_3336207_3338319_-	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|129aa|down_4|NZ_CP049956.1_3338326_3338713_-	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase	NA|721aa|down_5|NZ_CP049956.1_3338895_3341058_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|100aa|down_6|NZ_CP049956.1_3341163_3341463_-	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed	NA|222aa|down_7|NZ_CP049956.1_3341573_3342239_-	PRK00300, gmk, guanylate kinase; Provisional	NA|1023aa|down_8|NZ_CP049956.1_3342530_3345599_+	TIGR01553, Formate_dehydrogenase_major_subunit, formate dehydrogenase-N alpha subunit	NA|306aa|down_9|NZ_CP049956.1_3345609_3346527_+	TIGR01582, Formate_dehydrogenase_iron-sulfur_subunit, formate dehydrogenase, beta subunit, Fe-S containing
GCF_011386925.1_ASM1138692v1	NZ_CP049956	Stenotrophomonas maltophilia strain NCTC10498 chromosome, complete genome	7	3523020-3523150	6	CRISPRCasFinder	no		DEDDh,csa3,WYL,PD-DExK,cas3,Cas9_archaeal,DinG	Orphan	CGACCAAGGTCGGCACCCACCAGAG	25	0	0	NA	NA	NA	2	2	Orphan	DEDDh,csa3,WYL,PD-DExK,cas3,Cas9_archaeal,DinG	NA|394aa|up_9|NZ_CP049956.1_3510665_3511847_-,NA|112aa|up_3|NZ_CP049956.1_3519688_3520024_-,NA|145aa|up_0|NZ_CP049956.1_3522531_3522966_+,NA	NA|394aa|up_9|NZ_CP049956.1_3510665_3511847_-	NA	NA|954aa|up_8|NZ_CP049956.1_3511972_3514834_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|137aa|up_7|NZ_CP049956.1_3515105_3515516_-	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion]	NA|662aa|up_6|NZ_CP049956.1_3515712_3517698_+	PRK11619, PRK11619, lytic murein transglycosylase; Provisional	NA|407aa|up_5|NZ_CP049956.1_3517904_3519125_+	PRK10885, cca, multifunctional CCA addition/repair protein	NA|145aa|up_4|NZ_CP049956.1_3519204_3519639_-	pfam07179, SseB, SseB protein N-terminal domain	NA|112aa|up_3|NZ_CP049956.1_3519688_3520024_-	NA	NA|348aa|up_2|NZ_CP049956.1_3520027_3521071_-	pfam03572, Peptidase_S41, Peptidase family S41	NA|345aa|up_1|NZ_CP049956.1_3521120_3522155_-	pfam03572, Peptidase_S41, Peptidase family S41	NA|145aa|up_0|NZ_CP049956.1_3522531_3522966_+	NA	NA|1010aa|down_0|NZ_CP049956.1_3523175_3526205_-	cd01344, PL2_Passenger_AT, Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 2, of autotransporter proteins of the type V secretion system of Gram-negative bacteria	NA|356aa|down_1|NZ_CP049956.1_3526503_3527571_-	COG4299, COG4299, Uncharacterized protein conserved in bacteria [Function unknown]	NA|383aa|down_2|NZ_CP049956.1_3527570_3528719_-	COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]	NA|343aa|down_3|NZ_CP049956.1_3528718_3529747_-	COG2222, AgaS, Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]	NA|356aa|down_4|NZ_CP049956.1_3529754_3530822_-	cd01545, PBP1_SalR, ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators	NA|430aa|down_5|NZ_CP049956.1_3530861_3532151_-	cd17394, MFS_FucP_like, Fucose permease and similar proteins of the Major Facilitator Superfamily of transporters	NA|340aa|down_6|NZ_CP049956.1_3532529_3533549_+	PRK12408, PRK12408, glucokinase; Provisional	NA|903aa|down_7|NZ_CP049956.1_3533692_3536401_+	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor	NA|786aa|down_8|NZ_CP049956.1_3536512_3538870_+	cd06563, GH20_chitobiase-like, The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin	NA|131aa|down_9|NZ_CP049956.1_3538975_3539368_-	COG5652, COG5652, Predicted integral membrane protein [Function unknown]
GCF_011386925.1_ASM1138692v1	NZ_CP049956	Stenotrophomonas maltophilia strain NCTC10498 chromosome, complete genome	8	3559335-3559435	7	CRISPRCasFinder	no		DEDDh,csa3,WYL,PD-DExK,cas3,Cas9_archaeal,DinG	Orphan	GCTCGCTGTAAGCGAGGGGCTGAGGGT	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,PD-DExK,cas3,Cas9_archaeal,DinG	NA|414aa|up_5|NZ_CP049956.1_3551400_3552642_-,NA	NA|606aa|up_9|NZ_CP049956.1_3546551_3548369_-	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]	NA|128aa|up_8|NZ_CP049956.1_3548603_3548987_-	COG2823, OsmY, Predicted periplasmic or secreted lipoprotein [General function prediction only]	NA|348aa|up_7|NZ_CP049956.1_3549157_3550201_+	PRK11579, PRK11579, putative oxidoreductase; Provisional	NA|302aa|up_6|NZ_CP049956.1_3550490_3551396_-	PRK09599, PRK09599, NADP-dependent phosphogluconate dehydrogenase	NA|414aa|up_5|NZ_CP049956.1_3551400_3552642_-	NA	NA|197aa|up_4|NZ_CP049956.1_3552659_3553250_-	pfam10001, DUF2242, Uncharacterized protein conserved in bacteria (DUF2242)	NA|726aa|up_3|NZ_CP049956.1_3553496_3555674_-	PRK11186, PRK11186, carboxy terminal-processing peptidase	NA|337aa|up_2|NZ_CP049956.1_3555930_3556941_-	PRK05481, PRK05481, lipoyl synthase; Provisional	NA|237aa|up_1|NZ_CP049956.1_3556958_3557669_-	PRK14342, PRK14342, lipoyl(octanoyl) transferase LipB	NA|93aa|up_0|NZ_CP049956.1_3557656_3557935_-	PRK00907, PRK00907, hypothetical protein; Provisional	NA|404aa|down_0|NZ_CP049956.1_3559693_3560905_-	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]	NA|423aa|down_1|NZ_CP049956.1_3561005_3562274_-	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane]	NA|382aa|down_2|NZ_CP049956.1_3562270_3563416_-	TIGR02282, Membrane-bound_lytic_murein_transglycosylase_B, lytic murein transglycosylase B	NA|365aa|down_3|NZ_CP049956.1_3564407_3565502_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|371aa|down_4|NZ_CP049956.1_3565638_3566751_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|692aa|down_5|NZ_CP049956.1_3566747_3568823_-	TIGR03423, pbp2_mrdA, penicillin-binding protein 2	NA|162aa|down_6|NZ_CP049956.1_3568826_3569312_-	COG2891, MreD, Cell shape-determining protein [Cell envelope biogenesis, outer membrane]	NA|394aa|down_7|NZ_CP049956.1_3569308_3570490_-	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional	NA|349aa|down_8|NZ_CP049956.1_3570611_3571658_-	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional	NA|313aa|down_9|NZ_CP049956.1_3571941_3572880_+	cd01942, ribokinase_group_A, Ribokinase-like subgroup A
GCF_011386925.1_ASM1138692v1	NZ_CP049956	Stenotrophomonas maltophilia strain NCTC10498 chromosome, complete genome	9	3569367-3569487	8	CRISPRCasFinder	no		DEDDh,csa3,WYL,PD-DExK,cas3,Cas9_archaeal,DinG	Orphan	GCAGGATCAAGCGAAGATGCGGGAGCAACAGTCCTCG	37	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,PD-DExK,cas3,Cas9_archaeal,DinG	NA,NA|244aa|down_3|NZ_CP049956.1_3573768_3574500_-,NA|87aa|down_7|NZ_CP049956.1_3578319_3578580_+	NA|237aa|up_9|NZ_CP049956.1_3556958_3557669_-	PRK14342, PRK14342, lipoyl(octanoyl) transferase LipB	NA|93aa|up_8|NZ_CP049956.1_3557656_3557935_-	PRK00907, PRK00907, hypothetical protein; Provisional	NA|353aa|up_7|NZ_CP049956.1_3558286_3559345_+	pfam09982, DUF2219, Uncharacterized protein conserved in bacteria (DUF2219)	NA|404aa|up_6|NZ_CP049956.1_3559693_3560905_-	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]	NA|423aa|up_5|NZ_CP049956.1_3561005_3562274_-	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane]	NA|382aa|up_4|NZ_CP049956.1_3562270_3563416_-	TIGR02282, Membrane-bound_lytic_murein_transglycosylase_B, lytic murein transglycosylase B	NA|365aa|up_3|NZ_CP049956.1_3564407_3565502_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|371aa|up_2|NZ_CP049956.1_3565638_3566751_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|692aa|up_1|NZ_CP049956.1_3566747_3568823_-	TIGR03423, pbp2_mrdA, penicillin-binding protein 2	NA|162aa|up_0|NZ_CP049956.1_3568826_3569312_-	COG2891, MreD, Cell shape-determining protein [Cell envelope biogenesis, outer membrane]	NA|349aa|down_0|NZ_CP049956.1_3570611_3571658_-	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional	NA|313aa|down_1|NZ_CP049956.1_3571941_3572880_+	cd01942, ribokinase_group_A, Ribokinase-like subgroup A	NA|212aa|down_2|NZ_CP049956.1_3573145_3573781_-	COG0546, Gph, Predicted phosphatases [General function prediction only]	NA|244aa|down_3|NZ_CP049956.1_3573768_3574500_-	NA	NA|643aa|down_4|NZ_CP049956.1_3574627_3576556_-	cd09599, M1_LTA4H, Peptidase M1 family including Leukotriene A4 hydrolase catalytic domain	NA|254aa|down_5|NZ_CP049956.1_3576826_3577588_-	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA|151aa|down_6|NZ_CP049956.1_3577668_3578121_+	cd01285, nucleoside_deaminase, Nucleoside deaminases include adenosine, guanine and cytosine deaminases	NA|87aa|down_7|NZ_CP049956.1_3578319_3578580_+	NA	NA|112aa|down_8|NZ_CP049956.1_3578655_3578991_+	cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent dopamine transporter 1; solute-binding domain	NA|141aa|down_9|NZ_CP049956.1_3579058_3579481_+	pfam04120, Iron_permease, Low affinity iron permease
GCF_011386925.1_ASM1138692v1	NZ_CP049956	Stenotrophomonas maltophilia strain NCTC10498 chromosome, complete genome	10	3573023-3573141	9	CRISPRCasFinder	no		DEDDh,csa3,WYL,PD-DExK,cas3,Cas9_archaeal,DinG	Orphan	GTCGACCTTGGTCGACACTGCCGACCAGCGGCC	33	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,PD-DExK,cas3,Cas9_archaeal,DinG	NA,NA|244aa|down_1|NZ_CP049956.1_3573768_3574500_-,NA|87aa|down_5|NZ_CP049956.1_3578319_3578580_+	NA|404aa|up_9|NZ_CP049956.1_3559693_3560905_-	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]	NA|423aa|up_8|NZ_CP049956.1_3561005_3562274_-	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane]	NA|382aa|up_7|NZ_CP049956.1_3562270_3563416_-	TIGR02282, Membrane-bound_lytic_murein_transglycosylase_B, lytic murein transglycosylase B	NA|365aa|up_6|NZ_CP049956.1_3564407_3565502_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|371aa|up_5|NZ_CP049956.1_3565638_3566751_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|692aa|up_4|NZ_CP049956.1_3566747_3568823_-	TIGR03423, pbp2_mrdA, penicillin-binding protein 2	NA|162aa|up_3|NZ_CP049956.1_3568826_3569312_-	COG2891, MreD, Cell shape-determining protein [Cell envelope biogenesis, outer membrane]	NA|394aa|up_2|NZ_CP049956.1_3569308_3570490_-	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional	NA|349aa|up_1|NZ_CP049956.1_3570611_3571658_-	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional	NA|313aa|up_0|NZ_CP049956.1_3571941_3572880_+	cd01942, ribokinase_group_A, Ribokinase-like subgroup A	NA|212aa|down_0|NZ_CP049956.1_3573145_3573781_-	COG0546, Gph, Predicted phosphatases [General function prediction only]	NA|244aa|down_1|NZ_CP049956.1_3573768_3574500_-	NA	NA|643aa|down_2|NZ_CP049956.1_3574627_3576556_-	cd09599, M1_LTA4H, Peptidase M1 family including Leukotriene A4 hydrolase catalytic domain	NA|254aa|down_3|NZ_CP049956.1_3576826_3577588_-	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA|151aa|down_4|NZ_CP049956.1_3577668_3578121_+	cd01285, nucleoside_deaminase, Nucleoside deaminases include adenosine, guanine and cytosine deaminases	NA|87aa|down_5|NZ_CP049956.1_3578319_3578580_+	NA	NA|112aa|down_6|NZ_CP049956.1_3578655_3578991_+	cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent dopamine transporter 1; solute-binding domain	NA|141aa|down_7|NZ_CP049956.1_3579058_3579481_+	pfam04120, Iron_permease, Low affinity iron permease	NA|467aa|down_8|NZ_CP049956.1_3579564_3580965_-	PRK09837, PRK09837, Cu(I)/Ag(I) efflux RND transporter outer membrane protein	NA|1041aa|down_9|NZ_CP049956.1_3581057_3584180_-	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
GCF_011386925.1_ASM1138692v1	NZ_CP049956	Stenotrophomonas maltophilia strain NCTC10498 chromosome, complete genome	11	4217122-4217225	10	CRISPRCasFinder	no		DEDDh,csa3,WYL,PD-DExK,cas3,Cas9_archaeal,DinG	Orphan	GTGGTTGCCGGCCAGCGGCCGGCACTAC	28	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,PD-DExK,cas3,Cas9_archaeal,DinG	NA,NA|304aa|down_9|NZ_CP049956.1_4238137_4239049_+	NA|213aa|up_9|NZ_CP049956.1_4205728_4206367_-	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA|200aa|up_8|NZ_CP049956.1_4206406_4207006_-	COG2091, Sfp, Phosphopantetheinyl transferase [Coenzyme metabolism]	NA|84aa|up_7|NZ_CP049956.1_4207090_4207342_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|256aa|up_6|NZ_CP049956.1_4207414_4208182_-	cd09086, ExoIII-like_AP-endo, Escherichia coli exonuclease III (ExoIII) and Neisseria meningitides NExo-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases	NA|470aa|up_5|NZ_CP049956.1_4208313_4209723_-	cd07133, ALDH_CALDH_CalB, Coniferyl aldehyde dehydrogenase-like	NA|554aa|up_4|NZ_CP049956.1_4209936_4211598_-	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|476aa|up_3|NZ_CP049956.1_4211758_4213186_-	pfam16331, TolA_bind_tri, TolA binding protein trimerisation	NA|648aa|up_2|NZ_CP049956.1_4213431_4215375_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|222aa|up_1|NZ_CP049956.1_4215454_4216120_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|192aa|up_0|NZ_CP049956.1_4216530_4217106_+	COG1971, COG1971, Predicted membrane protein [Function unknown]	NA|716aa|down_0|NZ_CP049956.1_4220875_4223023_-	pfam10459, Peptidase_S46, Peptidase S46	NA|563aa|down_1|NZ_CP049956.1_4223150_4224839_+	cd10235, HscC_like_NBD, Nucleotide-binding domain of Escherichia coli HscC and similar proteins	NA|538aa|down_2|NZ_CP049956.1_4224835_4226449_+	pfam00226, DnaJ, DnaJ domain	NA|1286aa|down_3|NZ_CP049956.1_4226468_4230326_-	COG2911, COG2911, Uncharacterized protein conserved in bacteria [Function unknown]	NA|599aa|down_4|NZ_CP049956.1_4230322_4232119_-	COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane]	NA|692aa|down_5|NZ_CP049956.1_4232375_4234451_-	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated	NA|304aa|down_6|NZ_CP049956.1_4234538_4235450_-	PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated	NA|612aa|down_7|NZ_CP049956.1_4235533_4237369_+	COG2804, PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]	NA|249aa|down_8|NZ_CP049956.1_4237340_4238087_+	PRK09065, PRK09065, glutamine amidotransferase; Provisional	NA|304aa|down_9|NZ_CP049956.1_4238137_4239049_+	NA
GCF_011386925.1_ASM1138692v1	NZ_CP049956	Stenotrophomonas maltophilia strain NCTC10498 chromosome, complete genome	12	4834719-4834820	11	CRISPRCasFinder	no		DEDDh,csa3,WYL,PD-DExK,cas3,Cas9_archaeal,DinG	Orphan	GGTAGGTGCCGACCGTTGGTCGGCA	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,PD-DExK,cas3,Cas9_archaeal,DinG	NA|88aa|up_3|NZ_CP049956.1_4831853_4832117_-,NA	NA|160aa|up_9|NZ_CP049956.1_4825478_4825958_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|435aa|up_8|NZ_CP049956.1_4826107_4827412_+	PRK00711, PRK00711, D-amino acid dehydrogenase	NA|356aa|up_7|NZ_CP049956.1_4827390_4828458_+	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases	NA|188aa|up_6|NZ_CP049956.1_4828640_4829204_-	pfam11454, DUF3016, Protein of unknown function (DUF3016)	NA|663aa|up_5|NZ_CP049956.1_4829448_4831437_+	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional	NA|97aa|up_4|NZ_CP049956.1_4831480_4831771_+	pfam11607, DUF3247, Protein of unknown function (DUF3247)	NA|88aa|up_3|NZ_CP049956.1_4831853_4832117_-	NA	NA|355aa|up_2|NZ_CP049956.1_4832273_4833338_+	COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]	NA|234aa|up_1|NZ_CP049956.1_4833334_4834036_+	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like	NA|228aa|up_0|NZ_CP049956.1_4834032_4834716_+	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only]	NA|403aa|down_0|NZ_CP049956.1_4834830_4836039_-	PRK07967, PRK07967, beta-ketoacyl-ACP synthase I	NA|172aa|down_1|NZ_CP049956.1_4836038_4836554_-	PRK05174, PRK05174, bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA|357aa|down_2|NZ_CP049956.1_4836744_4837815_+	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|304aa|down_3|NZ_CP049956.1_4838164_4839076_-	cd07739, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|213aa|down_4|NZ_CP049956.1_4839214_4839853_-	COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only]	NA|310aa|down_5|NZ_CP049956.1_4839961_4840891_+	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|264aa|down_6|NZ_CP049956.1_4840887_4841679_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|219aa|down_7|NZ_CP049956.1_4841743_4842400_+	PRK13222, PRK13222, N-acetylmuramic acid 6-phosphate phosphatase MupP	NA|614aa|down_8|NZ_CP049956.1_4842500_4844342_-	TIGR01779, Vitamin_B12_transporter_BtuB, TonB-dependent vitamin B12 receptor	NA|193aa|down_9|NZ_CP049956.1_4844823_4845402_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)
