assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_011404355.1_ASM1140435v1	NZ_AP021892	Escherichia coli strain 2018-01-1CC	1	447609-447732	1	CRISPRCasFinder	no	DEDDh	PD-DExK,DEDDh,DinG,c2c9_V-U4,cas3,WYL,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,DEDDh,DinG,c2c9_V-U4,cas3,WYL,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA|30aa|down_7|NZ_AP021892.1_456628_456718_+	NA|471aa|up_9|NZ_AP021892.1_437063_438476_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_AP021892.1_439032_439242_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_AP021892.1_439696_440323_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_AP021892.1_440343_442446_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_AP021892.1_442458_443097_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_AP021892.1_443160_443829_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_AP021892.1_443825_444611_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_AP021892.1_444614_445427_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_AP021892.1_445438_447043_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_AP021892.1_447168_447474_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_AP021892.1_448046_449303_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_AP021892.1_449343_450717_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_AP021892.1_450931_451573_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_AP021892.1_451612_452761_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_AP021892.1_453051_454263_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_AP021892.1_454375_455308_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_AP021892.1_455304_456330_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_AP021892.1_456628_456718_+	NA	NA|390aa|down_8|NZ_AP021892.1_456883_458053_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_AP021892.1_458287_458869_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_011404355.1_ASM1140435v1	NZ_AP021892	Escherichia coli strain 2018-01-1CC	2	1070267-1070358	2	CRISPRCasFinder	no		PD-DExK,DEDDh,DinG,c2c9_V-U4,cas3,WYL,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,DEDDh,DinG,c2c9_V-U4,cas3,WYL,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|51aa|up_9|NZ_AP021892.1_1059342_1059495_-,NA	NA|51aa|up_9|NZ_AP021892.1_1059342_1059495_-	NA	NA|1321aa|up_8|NZ_AP021892.1_1059606_1063569_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_AP021892.1_1063608_1064247_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_AP021892.1_1064534_1065626_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_AP021892.1_1065625_1066318_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_AP021892.1_1066329_1066716_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_AP021892.1_1066723_1067524_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_AP021892.1_1067533_1068124_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_AP021892.1_1068134_1068629_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_AP021892.1_1068649_1069978_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_AP021892.1_1070781_1071378_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_AP021892.1_1071398_1071626_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_AP021892.1_1071663_1072905_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|307aa|down_3|NZ_AP021892.1_1074713_1075634_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_4|NZ_AP021892.1_1075633_1075939_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_5|NZ_AP021892.1_1076090_1076690_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_6|NZ_AP021892.1_1076686_1079233_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_7|NZ_AP021892.1_1079232_1080405_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_8|NZ_AP021892.1_1080534_1081227_+	PRK10766, PRK10766, two-component system response regulator TorR	NA|343aa|down_9|NZ_AP021892.1_1081199_1082228_-	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional
GCF_011404355.1_ASM1140435v1	NZ_AP021892	Escherichia coli strain 2018-01-1CC	3	1212643-1212848	3,1,1	CRISPRCasFinder,CRT,PILER-CR	no		PD-DExK,DEDDh,DinG,c2c9_V-U4,cas3,WYL,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAACG	28,28,29	0	0	NA	NA	I-F:I-F:I-F	3,3,2	3	Orphan	PD-DExK,DEDDh,DinG,c2c9_V-U4,cas3,WYL,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA	NA|431aa|up_9|NZ_AP021892.1_1197766_1199059_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_AP021892.1_1199149_1200493_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_AP021892.1_1200503_1201115_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1330aa|up_6|NZ_AP021892.1_1201269_1205259_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_AP021892.1_1205393_1205888_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_AP021892.1_1206432_1207398_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_AP021892.1_1207520_1209287_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_AP021892.1_1209287_1211009_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_AP021892.1_1211050_1211755_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_AP021892.1_1212039_1212258_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|NZ_AP021892.1_1213058_1215335_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_AP021892.1_1215365_1215686_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_AP021892.1_1216008_1216233_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_AP021892.1_1216305_1218252_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_AP021892.1_1218248_1219364_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|319aa|down_5|NZ_AP021892.1_1219514_1220471_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_AP021892.1_1220467_1222126_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|300aa|down_7|NZ_AP021892.1_1223740_1224640_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_8|NZ_AP021892.1_1224783_1226436_+	PRK05290, PRK05290, hybrid cluster protein; Provisional	NA|323aa|down_9|NZ_AP021892.1_1226447_1227416_+	PRK10684, PRK10684, HCP oxidoreductase, NADH-dependent; Provisional
GCF_011404355.1_ASM1140435v1	NZ_AP021892	Escherichia coli strain 2018-01-1CC	4	1380556-1380700	4	CRISPRCasFinder	no		PD-DExK,DEDDh,DinG,c2c9_V-U4,cas3,WYL,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,DEDDh,DinG,c2c9_V-U4,cas3,WYL,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|94aa|up_7|NZ_AP021892.1_1375802_1376084_+,NA	NA|61aa|up_9|NZ_AP021892.1_1375445_1375628_+	pfam07026, DUF1317, Protein of unknown function (DUF1317)	NA|64aa|up_8|NZ_AP021892.1_1375600_1375792_+	pfam07131, DUF1382, Protein of unknown function (DUF1382)	NA|94aa|up_7|NZ_AP021892.1_1375802_1376084_+	NA	NA|74aa|up_6|NZ_AP021892.1_1376182_1376404_+	PHA00080, PHA00080, DksA-like zinc finger domain containing protein	NA|124aa|up_5|NZ_AP021892.1_1376400_1376772_+	pfam13935, Ead_Ea22, Ead/Ea22-like protein	NA|216aa|up_4|NZ_AP021892.1_1376768_1377416_+	pfam04447, DUF550, Protein of unknown function (DUF550)	NA|60aa|up_3|NZ_AP021892.1_1377512_1377692_+	PHA00626, PHA00626, hypothetical protein	NA|73aa|up_2|NZ_AP021892.1_1377805_1378024_+	pfam07825, Exc, Excisionase-like protein	NA|357aa|up_1|NZ_AP021892.1_1378001_1379072_+	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|428aa|up_0|NZ_AP021892.1_1379206_1380490_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_AP021892.1_1380723_1382985_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_AP021892.1_1383167_1384601_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_AP021892.1_1384676_1385729_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_AP021892.1_1385912_1386866_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_AP021892.1_1386906_1387902_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_AP021892.1_1388056_1388875_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_AP021892.1_1388875_1389934_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_AP021892.1_1389936_1390626_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_AP021892.1_1390625_1391399_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_AP021892.1_1391565_1391715_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_011404355.1_ASM1140435v1	NZ_AP021892	Escherichia coli strain 2018-01-1CC	5	1623555-1623651	5	CRISPRCasFinder	no		PD-DExK,DEDDh,DinG,c2c9_V-U4,cas3,WYL,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,DEDDh,DinG,c2c9_V-U4,cas3,WYL,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA	NA|231aa|up_9|NZ_AP021892.1_1614572_1615265_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|NZ_AP021892.1_1615484_1616027_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|NZ_AP021892.1_1617275_1618142_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_AP021892.1_1618143_1618356_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_AP021892.1_1618463_1618985_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_AP021892.1_1619020_1620406_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_AP021892.1_1620579_1621074_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_AP021892.1_1621076_1621799_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_AP021892.1_1621916_1622426_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_AP021892.1_1622422_1623490_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_AP021892.1_1623684_1624578_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_AP021892.1_1624574_1625390_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_AP021892.1_1625400_1626660_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|NZ_AP021892.1_1626669_1628337_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|NZ_AP021892.1_1628653_1629703_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|NZ_AP021892.1_1629724_1630960_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|NZ_AP021892.1_1630970_1631756_+	COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]	NA|382aa|down_7|NZ_AP021892.1_1631983_1633129_-	PRK09932, PRK09932, glycerate 3-kinase	NA|429aa|down_8|NZ_AP021892.1_1633165_1634452_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|NZ_AP021892.1_1634508_1635870_-	PRK08044, PRK08044, allantoinase AllB
GCF_011404355.1_ASM1140435v1	NZ_AP021892	Escherichia coli strain 2018-01-1CC	6	1763107-1763251	6	CRISPRCasFinder	no		PD-DExK,DEDDh,DinG,c2c9_V-U4,cas3,WYL,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,DEDDh,DinG,c2c9_V-U4,cas3,WYL,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA|28aa|down_2|NZ_AP021892.1_1765296_1765380_-	NA|357aa|up_9|NZ_AP021892.1_1748245_1749316_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|194aa|up_8|NZ_AP021892.1_1749408_1749990_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|606aa|up_7|NZ_AP021892.1_1749994_1751812_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_6|NZ_AP021892.1_1751967_1753341_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_5|NZ_AP021892.1_1753416_1754736_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_4|NZ_AP021892.1_1755142_1756438_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_3|NZ_AP021892.1_1756495_1757185_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|401aa|up_2|NZ_AP021892.1_1757374_1758577_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1049aa|up_1|NZ_AP021892.1_1758573_1761720_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|395aa|up_0|NZ_AP021892.1_1761845_1763030_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|303aa|down_0|NZ_AP021892.1_1763274_1764183_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|304aa|down_1|NZ_AP021892.1_1764307_1765219_+	PRK00321, rdgC, recombination associated protein; Reviewed	NA|28aa|down_2|NZ_AP021892.1_1765296_1765380_-	NA	NA|95aa|down_3|NZ_AP021892.1_1765865_1766150_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_4|NZ_AP021892.1_1766221_1766899_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|64aa|down_5|NZ_AP021892.1_1767156_1767348_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_6|NZ_AP021892.1_1767397_1767922_-	PRK03731, aroL, shikimate kinase AroL	NA|155aa|down_7|NZ_AP021892.1_1768098_1768563_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|270aa|down_8|NZ_AP021892.1_1768682_1769492_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|372aa|down_9|NZ_AP021892.1_1769508_1770624_-	PRK10245, adrA, diguanylate cyclase AdrA; Provisional
GCF_011404355.1_ASM1140435v1	NZ_AP021892	Escherichia coli strain 2018-01-1CC	7	2129806-2129947	7	CRISPRCasFinder	no		PD-DExK,DEDDh,DinG,c2c9_V-U4,cas3,WYL,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	GCTGGAGAGCAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGA	52	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,DEDDh,DinG,c2c9_V-U4,cas3,WYL,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA	NA|96aa|up_9|NZ_AP021892.1_2118797_2119085_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_8|NZ_AP021892.1_2119081_2120368_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_7|NZ_AP021892.1_2120418_2121360_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_6|NZ_AP021892.1_2121374_2122145_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|up_5|NZ_AP021892.1_2122617_2124132_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|up_4|NZ_AP021892.1_2124162_2125305_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|up_3|NZ_AP021892.1_2125433_2126651_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|up_2|NZ_AP021892.1_2126724_2128278_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|up_1|NZ_AP021892.1_2128386_2129172_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|up_0|NZ_AP021892.1_2129177_2129768_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_0|NZ_AP021892.1_2129976_2130372_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_1|NZ_AP021892.1_2130633_2133855_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_2|NZ_AP021892.1_2133872_2135021_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_3|NZ_AP021892.1_2135476_2136298_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|305aa|down_4|NZ_AP021892.1_2136464_2137379_-	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional	NA|317aa|down_5|NZ_AP021892.1_2137444_2138395_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|150aa|down_6|NZ_AP021892.1_2138396_2138846_-	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional	NA|165aa|down_7|NZ_AP021892.1_2138970_2139465_-	PRK00376, lspA, lipoprotein signal peptidase	NA|939aa|down_8|NZ_AP021892.1_2139464_2142281_-	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|314aa|down_9|NZ_AP021892.1_2142323_2143265_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase
GCF_011404355.1_ASM1140435v1	NZ_AP021892	Escherichia coli strain 2018-01-1CC	8	3943114-3943630	2,8,2	PILER-CR,CRISPRCasFinder,CRT	no		PD-DExK,DEDDh,DinG,c2c9_V-U4,cas3,WYL,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29	0	0	NA	NA	I-E:I-E:I-E	8,8,8	8	Orphan	PD-DExK,DEDDh,DinG,c2c9_V-U4,cas3,WYL,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|47aa|up_1|NZ_AP021892.1_3941823_3941964_-,NA	NA|919aa|up_9|NZ_AP021892.1_3929707_3932464_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|NZ_AP021892.1_3932520_3933822_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|NZ_AP021892.1_3933869_3936104_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|NZ_AP021892.1_3936181_3936430_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_5|NZ_AP021892.1_3936429_3936765_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_4|NZ_AP021892.1_3936835_3937627_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|NZ_AP021892.1_3937854_3939492_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|NZ_AP021892.1_3939579_3940878_+	PRK00077, eno, enolase; Provisional	NA|47aa|up_1|NZ_AP021892.1_3941823_3941964_-	NA	NA|224aa|up_0|NZ_AP021892.1_3942102_3942774_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_AP021892.1_3944268_3945747_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_AP021892.1_3945773_3947051_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_AP021892.1_3947369_3948155_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_AP021892.1_3948224_3949679_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|NZ_AP021892.1_3949700_3951110_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_AP021892.1_3951087_3951867_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_AP021892.1_3951863_3952724_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_AP021892.1_3952871_3953447_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_AP021892.1_3953463_3953724_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_AP021892.1_3953714_3954986_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_011404355.1_ASM1140435v1	NZ_AP021892	Escherichia coli strain 2018-01-1CC	9	3970681-3971014	3,9,3	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	PD-DExK,DEDDh,DinG,c2c9_V-U4,cas3,WYL,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	5,5,5	5	TypeI-E	PD-DExK,DEDDh,DinG,c2c9_V-U4,cas3,WYL,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA	NA|51aa|up_9|NZ_AP021892.1_3960329_3960482_+	pfam01848, HOK_GEF, Hok/gef family	NA|371aa|up_8|NZ_AP021892.1_3960674_3961787_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	cas3|900aa|up_7|NZ_AP021892.1_3962025_3964725_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_AP021892.1_3964822_3966385_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|NZ_AP021892.1_3966381_3966918_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|352aa|up_4|NZ_AP021892.1_3966929_3967985_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_AP021892.1_3967995_3968742_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_AP021892.1_3968723_3969374_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|NZ_AP021892.1_3969370_3970294_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_AP021892.1_3970290_3970584_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_AP021892.1_3971095_3972133_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_AP021892.1_3972384_3973293_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_AP021892.1_3973294_3974722_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_AP021892.1_3974721_3975327_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_AP021892.1_3975376_3975700_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_AP021892.1_3975893_3976205_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_AP021892.1_3976223_3976934_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_AP021892.1_3976933_3977413_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_AP021892.1_3977409_3978459_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_AP021892.1_3978439_3979201_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_011404355.1_ASM1140435v1	NZ_AP021892	Escherichia coli strain 2018-01-1CC	10	4518901-4519018	10	CRISPRCasFinder	no		PD-DExK,DEDDh,DinG,c2c9_V-U4,cas3,WYL,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,DEDDh,DinG,c2c9_V-U4,cas3,WYL,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA	NA|62aa|up_9|NZ_AP021892.1_4508186_4508372_-	PRK09956, PRK09956, ISNCY family transposase	NA|300aa|up_8|NZ_AP021892.1_4508384_4509284_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_AP021892.1_4509476_4510667_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_AP021892.1_4510663_4511923_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_AP021892.1_4511912_4513541_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_AP021892.1_4513813_4515172_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_AP021892.1_4515176_4516253_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_AP021892.1_4516715_4517366_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_AP021892.1_4517419_4517674_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_AP021892.1_4517673_4518804_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_AP021892.1_4519037_4521323_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_AP021892.1_4522018_4525771_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_AP021892.1_4525898_4526621_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_AP021892.1_4526767_4529395_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_AP021892.1_4529543_4531232_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_AP021892.1_4531228_4531852_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|NZ_AP021892.1_4531995_4536390_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|NZ_AP021892.1_4536390_4538040_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|252aa|down_8|NZ_AP021892.1_4538064_4538820_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|NZ_AP021892.1_4538893_4540078_-	PRK05790, PRK05790, putative acyltransferase; Provisional
