The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_AP021894	Escherichia coli strain 2018-10-1CC	4701941	1127797	1138833	4701941	integrase	Enterobacteria_phage(70.0%)	12	1126789:1126802	1138959:1138972
1126789:1126802	attL	AATATCATTTATCC	NA	NA	NA	NA
WP_172410139.1|1127797_1130131_-	toprim domain-containing protein	NA	Q7M2A8	Enterobacteria_phage	99.2	0.0e+00
WP_000856729.1|1130145_1130466_-	DUF5375 domain-containing protein	NA	NA	NA	NA	NA
WP_000459298.1|1130601_1131057_-	hypothetical protein	NA	Q7M298	Enterobacteria_phage	99.1	1.6e-64
WP_001244664.1|1131049_1131337_-	hypothetical protein	NA	Q7M2A0	Enterobacteria_phage	98.9	5.1e-48
WP_024191950.1|1131329_1131929_-	host cell division inhibitor Icd-like protein	NA	Q7M2A7	Enterobacteria_phage	81.8	1.7e-50
WP_001149160.1|1131925_1132192_-	AlpA family transcriptional regulator	NA	Q7M299	Enterobacteria_phage	100.0	4.9e-45
WP_172410140.1|1132743_1133478_+	glycoprotein 3	NA	Q7M2A2	Enterobacteria_phage	97.5	2.6e-128
WP_000638628.1|1133474_1133975_+	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA	NA
WP_172410141.1|1134048_1134621_+	Polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	96.8	5.0e-95
WP_001133507.1|1134991_1136350_-	SIR2 family protein	NA	Q38324	Lactococcus_phage	28.5	7.3e-20
WP_094312610.1|1136377_1137589_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1B5FPC6	Escherichia_phage	50.1	1.8e-107
WP_000162574.1|1138350_1138833_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	46.8	4.0e-29
1138959:1138972	attR	GGATAAATGATATT	NA	NA	NA	NA
>prophage 2
NZ_AP021894	Escherichia coli strain 2018-10-1CC	4701941	1665797	1675239	4701941		Enterobacteria_phage(85.71%)	10	NA	NA
WP_000569357.1|1665797_1666724_+	glycine betaine ABC transporter ATP binding protein YehX	NA	G3M9Y6	Bacillus_virus	30.8	1.7e-23
WP_000783120.1|1666728_1667460_+	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA	NA
WP_001216963.1|1667440_1667548_-	protein YohO	NA	NA	NA	NA	NA
WP_001240401.1|1667607_1668339_-	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	99.5	9.7e-112
WP_001295431.1|1668560_1670246_+	two-component regulatory system sensor histidine kinase BtsS	NA	Q9EYF3	Enterobacteria_phage	99.6	2.5e-304
WP_000598641.1|1670242_1670962_+	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_001295430.1|1671008_1671479_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	100.0	1.8e-82
WP_001373589.1|1671519_1671981_-	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	98.7	1.6e-75
WP_001423058.1|1672105_1674106_-	SWIM zinc finger family protein	NA	Q9EYF6	Enterobacteria_phage	96.6	0.0e+00
WP_063614624.1|1674102_1675239_-	VWA domain-containing protein	NA	Q9EYF7	Enterobacteria_phage	97.7	1.9e-162
>prophage 3
NZ_AP021894	Escherichia coli strain 2018-10-1CC	4701941	1766784	1775583	4701941	transposase	Enterobacteria_phage(25.0%)	8	NA	NA
WP_032170515.1|1766784_1768179_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	31.9	4.9e-19
WP_172410166.1|1768336_1769332_+	SDR family oxidoreductase	NA	A0A2H4X257	Flamingopox_virus	29.2	3.0e-07
WP_085947771.1|1769458_1770620_+|transposase	IS3-like element IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	40.6	3.1e-51
WP_001598539.1|1770835_1771729_+	UTP--glucose-1-phosphate uridylyltransferase GalF	NA	A0A127AW70	Bacillus_phage	42.0	1.7e-46
WP_001374049.1|1772097_1773183_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	54.2	2.3e-101
WP_001374048.1|1773182_1774082_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	35.2	2.0e-29
WP_001471777.1|1774139_1775018_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	64.1	1.9e-106
WP_172410167.1|1775022_1775583_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	57.5	6.0e-53
>prophage 4
NZ_AP021894	Escherichia coli strain 2018-10-1CC	4701941	1801501	1838155	4701941	terminase,protease,tail,coat,lysis,holin,head,integrase,portal	Enterobacteria_phage(57.14%)	56	1794329:1794343	1823373:1823387
1794329:1794343	attL	TTTTCTTATTCCTCT	NA	NA	NA	NA
WP_001007954.1|1801501_1802680_+|integrase	site-specific integrase	integrase	A0A0P0ZDN8	Stx2-converting_phage	99.7	4.0e-232
WP_000132739.1|1802660_1802852_-	AlpA family phage regulatory protein	NA	A0A0P0ZBL0	Stx2-converting_phage	100.0	1.7e-31
WP_000545737.1|1802882_1803050_-	hypothetical protein	NA	A5VWB7	Enterobacteria_phage	100.0	9.8e-28
WP_172410168.1|1803208_1803487_-	DUF4752 family protein	NA	K7P6P7	Enterobacteria_phage	95.7	6.0e-46
WP_172410169.1|1803486_1803987_-	DUF551 domain-containing protein	NA	G9L6B4	Escherichia_phage	67.0	9.7e-63
WP_000360281.1|1803997_1804195_-	hypothetical protein	NA	A0A1I9SEY0	Klebsiella_phage	87.7	5.9e-32
WP_172410170.1|1804196_1804658_-	ead/Ea22-like family protein	NA	A0A077SLK5	Escherichia_phage	60.8	3.9e-58
WP_061182087.1|1804659_1804959_-	hypothetical protein	NA	G8C7K8	Escherichia_phage	98.0	4.3e-58
WP_001214453.1|1804955_1805123_-	DUF2737 family protein	NA	Q716F2	Shigella_phage	100.0	1.7e-24
WP_000773123.1|1805119_1805401_-	hypothetical protein	NA	K7P7M4	Enterobacteria_phage	100.0	1.5e-44
WP_128550142.1|1805417_1805732_-	hypothetical protein	NA	K7PLT4	Enterobacteria_phage	99.0	5.9e-50
WP_001580128.1|1805743_1806226_-	siphovirus Gp157 family protein	NA	K7P6T5	Enterobacteria_phage	96.9	4.6e-78
WP_172410171.1|1806209_1807121_-	recombinase RecT	NA	K7PKG9	Enterobacteria_phage	98.7	6.3e-169
WP_000604110.1|1807117_1807426_-	hypothetical protein	NA	K7PJM4	Enterobacteria_phage	99.0	3.3e-53
WP_001243355.1|1807510_1807663_-	host cell division inhibitory peptide Kil	NA	A5VWA5	Enterobacteria_phage	100.0	4.7e-21
WP_000638547.1|1807647_1807779_-|protease	protease FtsH-inhibitory lysogeny factor CIII	protease	A5VWA4	Enterobacteria_phage	100.0	1.4e-16
WP_016063363.1|1807803_1808772_-	hypothetical protein	NA	G5DA88	Enterobacteria_phage	100.0	7.7e-56
WP_000406158.1|1809222_1809603_-	antitermination protein	NA	A4KWR0	Enterobacteria_phage	100.0	3.1e-53
WP_000618042.1|1809851_1810256_-	hypothetical protein	NA	Q716D7	Shigella_phage	100.0	5.1e-70
WP_000028392.1|1810252_1810885_-	LexA family transcriptional regulator	NA	K7P850	Enterobacteria_phage	99.5	1.6e-118
WP_001194218.1|1810988_1811204_+	helix-turn-helix transcriptional regulator	NA	Q716D6	Shigella_phage	100.0	1.4e-31
WP_000536662.1|1811320_1811602_+	hypothetical protein	NA	K7PMG0	Enterobacteria_phage	100.0	1.9e-44
WP_000166961.1|1811636_1811798_+	hypothetical protein	NA	Q76H53	Enterobacteria_phage	100.0	1.3e-21
WP_097489553.1|1811784_1812615_+	replication protein	NA	A0A1R3Y5R9	Salmonella_virus	92.5	1.2e-134
WP_000806592.1|1812611_1813988_+	AAA family ATPase	NA	A0A0P0ZC27	Stx2-converting_phage	99.6	2.8e-253
WP_172410172.1|1814262_1814703_+	recombination protein NinB	NA	M1FPM8	Enterobacteria_phage	99.3	4.5e-80
WP_172410173.1|1814699_1815227_+	phage N-6-adenine-methyltransferase	NA	K7PMG2	Enterobacteria_phage	99.4	1.2e-100
WP_001254220.1|1815223_1815400_+	NinE family protein	NA	K7PHE6	Enterobacteria_phage	100.0	2.7e-28
WP_025748956.1|1815402_1815756_+	DUF2591 domain-containing protein	NA	K7PH48	Enterobacterial_phage	73.0	4.5e-38
WP_000950943.1|1815755_1815932_+	protein ninF	NA	A0A220NRM2	Escherichia_phage	98.3	2.5e-26
WP_001286917.1|1815924_1816137_+	hypothetical protein	NA	K7PK10	Enterobacteria_phage	100.0	1.6e-35
WP_025748957.1|1816129_1816420_+	DUF1364 domain-containing protein	NA	A0A192Y6R9	Salmonella_phage	97.9	1.9e-50
WP_025748958.1|1816416_1816779_+	RusA family crossover junction endodeoxyribonuclease	NA	A5VW85	Enterobacteria_phage	99.2	3.5e-62
WP_000994516.1|1816775_1816964_+	protein ninH	NA	A5VW84	Enterobacteria_phage	100.0	5.5e-27
WP_021511846.1|1816960_1817479_+	DUF1133 family protein	NA	Q716B8	Shigella_phage	98.8	6.5e-94
WP_000783734.1|1817940_1818264_+|holin	phage holin, lambda family	holin	G5DA93	Enterobacteria_phage	100.0	1.3e-52
WP_000229394.1|1818247_1818724_+	glycoside hydrolase family protein	NA	K7PKI0	Enterobacteria_phage	100.0	1.3e-88
WP_089625395.1|1818720_1819158_+|lysis	lysis protein	lysis	I6RSJ6	Salmonella_phage	97.2	1.9e-70
WP_000877024.1|1819360_1819891_+	KilA-N domain-containing protein	NA	B8K1H1	Salmonella_phage	95.5	3.4e-90
WP_000807788.1|1820147_1820390_+	DUF2560 family protein	NA	A5VW77	Enterobacteria_phage	100.0	1.3e-36
WP_000113732.1|1820392_1820833_+	hypothetical protein	NA	C7U0V7	Enterobacteria_phage	99.3	1.7e-79
WP_000200766.1|1820829_1822245_+|terminase	PBSX family phage terminase large subunit	terminase	A5VW75	Enterobacteria_phage	99.8	1.2e-278
WP_021499317.1|1822246_1824445_+|portal	portal protein	portal	A0A088CQ69	Enterobacteria_phage	97.3	0.0e+00
1823373:1823387	attR	AGAGGAATAAGAAAA	NA	NA	NA	NA
WP_044342089.1|1824535_1825429_+	hypothetical protein	NA	A5VW73	Enterobacteria_phage	86.5	9.7e-122
WP_053902926.1|1825447_1826701_+|coat	coat protein	coat	A0A088CQ56	Enterobacteria_phage	98.6	3.5e-234
WP_001389518.1|1826742_1826931_+	hypothetical protein	NA	A0A088CPR7	Enterobacteria_phage	100.0	2.9e-28
WP_042098823.1|1826911_1827373_+|head	head DNA stabilization protein	head	A5VW70	Enterobacteria_phage	99.3	2.1e-83
WP_172410174.1|1827382_1828801_+	packaged DNA stabilization protein gp10	NA	A0A2D1GM00	Escherichia_phage	99.2	1.6e-275
WP_172410175.1|1828800_1829502_+|tail	phage tail protein	tail	A5VW68	Enterobacteria_phage	97.0	1.1e-117
WP_000627632.1|1829501_1829957_+	DUF2824 family protein	NA	A0A2D1GLX4	Escherichia_phage	100.0	1.8e-87
WP_172410176.1|1829959_1830652_+	DNA transfer protein	NA	A0A2H4FUQ9	Salmonella_phage	98.7	7.3e-117
WP_172410177.1|1830662_1832012_+	DNA transfer protein	NA	Q9AYZ0	Salmonella_phage	99.8	1.3e-247
WP_124036024.1|1832011_1834171_+	DNA transfer protein	NA	A5VW64	Enterobacteria_phage	99.2	0.0e+00
WP_000895335.1|1834171_1834501_-	hypothetical protein	NA	Q9AYY8	Salmonella_phage	99.1	1.7e-52
WP_000136767.1|1834657_1835626_+	hypothetical protein	NA	A9YX09	Burkholderia_phage	48.6	8.5e-71
WP_172410178.1|1835788_1838155_+	hypothetical protein	NA	A0A2D1GLP5	Escherichia_phage	51.3	9.6e-60
>prophage 5
NZ_AP021894	Escherichia coli strain 2018-10-1CC	4701941	2259948	2308203	4701941	terminase,protease,tail,transposase,lysis,integrase	Escherichia_phage(28.57%)	59	2254299:2254314	2284606:2284621
2254299:2254314	attL	TTCATAAAAATAATCC	NA	NA	NA	NA
WP_001260865.1|2259948_2260770_-|protease	serine protease	protease	NA	NA	NA	NA
WP_000233090.1|2260869_2260953_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000743957.1|2261045_2261381_-	acid shock protein	NA	NA	NA	NA	NA
WP_000091840.1|2261777_2263031_-	MFS transporter	NA	NA	NA	NA	NA
WP_001019525.1|2263137_2264031_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000225262.1|2264165_2265386_+	DNA-binding transcriptional repressor Mlc	NA	NA	NA	NA	NA
WP_000919231.1|2265510_2266206_+	ATP-dependent dethiobiotin synthetase BioD	NA	NA	NA	NA	NA
WP_074169909.1|2266158_2267451_-	voltage-gated ClC-type chloride channel ClcB	NA	NA	NA	NA	NA
WP_000148710.1|2267609_2268224_-	Tat proofreading chaperone DmsD	NA	A0A077SLS7	Escherichia_phage	36.3	8.7e-29
WP_000526477.1|2268266_2269121_-	dimethyl sulfoxide reductase anchor subunit	NA	NA	NA	NA	NA
WP_000213028.1|2269122_2269740_-	dimethylsulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	59.6	9.5e-76
WP_072169196.1|2269750_2272174_-	dimethyl sulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	48.8	1.3e-208
WP_001761878.1|2272234_2274661_-	dimethyl sulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	49.3	2.3e-213
WP_001295396.1|2274859_2275165_-	DUF1161 domain-containing protein	NA	NA	NA	NA	NA
WP_072104773.1|2275272_2275983_+	YnfC family lipoprotein	NA	NA	NA	NA	NA
WP_001138584.1|2275985_2276546_-	spermidine N1-acetyltransferase	NA	NA	NA	NA	NA
WP_000705197.1|2276580_2276922_-	DUF1283 family protein	NA	NA	NA	NA	NA
WP_001295395.1|2277056_2277383_+	YnfA family protein	NA	A0A218MNG8	uncultured_virus	55.6	7.6e-24
WP_001295394.1|2277588_2278803_+	starvation-sensing protein RspA	NA	Q6A202	Oenococcus_phage	29.0	1.4e-46
WP_172410192.1|2278814_2279834_+	Zn-dependent oxidoreductase	NA	E3SJ82	Synechococcus_phage	26.2	4.3e-17
WP_021531328.1|2279891_2280002_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876979.1|2280021_2281302_-|integrase	site-specific integrase	integrase	B6DZ48	Enterobacteria_phage	62.3	8.6e-156
WP_000005552.1|2281336_2281588_-	excisionase family protein	NA	S4TND0	Salmonella_phage	50.0	2.2e-15
WP_162853977.1|2282577_2283790_+|transposase	IS3 family transposase	transposase	A0A0N7C1X7	Escherichia_phage	100.0	7.6e-170
WP_001315552.1|2284150_2284507_+	class I SAM-dependent methyltransferase	NA	H9C170	Pectobacterium_phage	71.4	6.3e-40
WP_085947771.1|2285395_2286558_-|transposase	IS3-like element IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	40.6	3.1e-51
2284606:2284621	attR	GGATTATTTTTATGAA	NA	NA	NA	NA
WP_000955178.1|2287072_2287255_-	hypothetical protein	NA	Q7Y2Q9	Escherichia_phage	74.5	6.3e-12
WP_000589013.1|2287432_2288773_+|transposase	ISNCY family transposase	transposase	NA	NA	NA	NA
WP_001301033.1|2289209_2289542_-	protein FlxA	NA	NA	NA	NA	NA
WP_071593935.1|2289744_2290050_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000534858.1|2290074_2290314_+	type II toxin-antitoxin system antitoxin RelB	NA	A0A2H4JBG1	uncultured_Caudovirales_phage	54.4	1.6e-18
WP_000323025.1|2290313_2290601_+	type II toxin-antitoxin system mRNA interferase RelE	NA	A0A2H4JBF4	uncultured_Caudovirales_phage	66.0	1.4e-29
WP_000813254.1|2290672_2290828_+	type I toxin-antitoxin system toxin HokD	NA	A0A0U2QV81	Escherichia_phage	96.1	1.5e-17
WP_001463433.1|2291044_2291296_+	hypothetical protein	NA	NA	NA	NA	NA
WP_172410193.1|2291362_2291641_+	hypothetical protein	NA	I6PCV7	Cronobacter_phage	48.4	7.4e-12
WP_001515372.1|2291642_2292692_+	DUF968 domain-containing protein	NA	A0A291AWV9	Escherichia_phage	57.3	1.7e-112
WP_001204787.1|2292709_2293087_+	antitermination protein	NA	Q777W5	Enterobacteria_phage	82.5	1.8e-53
WP_000780584.1|2293242_2293767_-	lipocalin family protein	NA	A0A1W6JNX6	Morganella_phage	52.9	1.0e-46
WP_001146314.1|2294720_2295434_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_001515371.1|2295624_2295840_+|lysis	phage lysis protein EssD	lysis	A5LH82	Enterobacteria_phage	95.8	1.3e-32
WP_001515370.1|2295844_2296159_+	YdfR family protein	NA	K7PGU6	Enterobacteria_phage	97.1	1.6e-50
WP_001515369.1|2296214_2296748_+	lysozyme	NA	Q08J98	Stx2-converting_phage	93.8	1.1e-99
WP_001071769.1|2296744_2297242_+	DUF2514 domain-containing protein	NA	A0A291LBG9	Klebsiella_phage	29.5	2.9e-06
WP_000066495.1|2297603_2297816_+	cold shock protein CspI	NA	A0A1W6JNX5	Morganella_phage	74.3	1.2e-22
WP_071524604.1|2297826_2298015_+	cold-shock protein	NA	NA	NA	NA	NA
WP_120795388.1|2298017_2298083_+	Qin prophage; protein YnfR	NA	NA	NA	NA	NA
WP_085947771.1|2298227_2299389_+|transposase	IS3-like element IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	40.6	3.1e-51
WP_001309517.1|2299422_2299578_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001019606.1|2299749_2299923_+	addiction module toxin, GnsA/GnsB family	NA	NA	NA	NA	NA
WP_000373090.1|2300074_2300485_-	DUF1398 domain-containing protein	NA	C6ZCX4	Enterobacteria_phage	79.4	2.5e-56
WP_001368374.1|2300542_2300776_-	YlcI/YnfO family protein	NA	A0A0K2FIR8	Escherichia_phage	84.1	2.5e-21
WP_032187400.1|2301164_2301710_+	DNA-packaging protein	NA	A0A0K2FIG2	Enterobacteria_phage	97.8	2.0e-93
WP_032187399.1|2301684_2303610_+|terminase	phage terminase large subunit family protein	terminase	A0A0K2FJ14	Enterobacteria_phage	99.7	0.0e+00
WP_000198149.1|2303606_2303813_+	gpW family protein	NA	A0A2R9YJL2	Escherichia_phage	100.0	5.8e-30
WP_001301586.1|2304483_2304618_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001162608.1|2304578_2306237_+|tail	tail fiber protein	tail	U5N099	Enterobacteria_phage	56.9	8.8e-76
WP_032187390.1|2306880_2307471_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	38.8	1.6e-24
WP_172410194.1|2307787_2308021_-	cold shock protein YdfK	NA	A0A192Y6D5	Salmonella_phage	87.0	9.2e-32
WP_120795384.1|2308089_2308203_-	Rac prophage; protein YnaM	NA	A0A1C9IHU6	Salmonella_phage	80.6	8.4e-07
>prophage 6
NZ_AP021894	Escherichia coli strain 2018-10-1CC	4701941	2586604	2651931	4701941	terminase,tail,protease,plate,integrase,holin,head,capsid,portal	Enterobacteria_phage(34.15%)	82	2615392:2615405	2652657:2652670
WP_000422045.1|2586604_2587654_-|protease	protease SohB	protease	A0A2H4UUF9	Bodo_saltans_virus	31.5	1.3e-21
WP_000559274.1|2587873_2588632_+	YciK family oxidoreductase	NA	A0A0N9R355	Chrysochromulina_ericina_virus	23.9	1.5e-06
WP_001278906.1|2588628_2589219_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_001291217.1|2589258_2590134_-	23S rRNA pseudouridine(2605) synthase RluB	NA	NA	NA	NA	NA
WP_001301109.1|2590346_2592242_-	DUF2207 domain-containing protein	NA	NA	NA	NA	NA
WP_001295575.1|2592269_2592890_-	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_001285663.1|2592886_2593768_-	5'-3' exoribonuclease	NA	NA	NA	NA	NA
WP_001700591.1|2593905_2593950_+	trp operon leader peptide	NA	NA	NA	NA	NA
WP_001194582.1|2594041_2595604_+	anthranilate synthase component I	NA	NA	NA	NA	NA
WP_000763511.1|2595603_2597199_+	bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD	NA	A0A0N7IRD9	Acinetobacter_phage	38.5	3.8e-52
WP_000983912.1|2597199_2598561_+	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	NA	A0A0P0IR83	Acinetobacter_phage	40.2	1.1e-36
WP_000209520.1|2598572_2599766_+	tryptophan synthase subunit beta	NA	NA	NA	NA	NA
WP_000443067.1|2599765_2600572_+	tryptophan synthase subunit alpha	NA	NA	NA	NA	NA
WP_000807651.1|2600952_2601132_+	general stress protein	NA	NA	NA	NA	NA
WP_001056490.1|2601217_2601718_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_001079505.1|2601763_2602270_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_000737226.1|2602329_2602968_-	outer membrane protein OmpW	NA	NA	NA	NA	NA
WP_000028545.1|2603324_2604068_+	UPF0259 family protein	NA	NA	NA	NA	NA
WP_000808667.1|2604097_2604637_+	septation protein A	NA	NA	NA	NA	NA
WP_000108160.1|2604741_2605140_+	acyl-CoA thioester hydrolase YciA	NA	NA	NA	NA	NA
WP_001360141.1|2605179_2605899_-	TonB system transport protein TonB	NA	NA	NA	NA	NA
WP_000967595.1|2606122_2606419_+	YciI family protein	NA	NA	NA	NA	NA
WP_000639140.1|2606537_2607086_-	recombinase family protein	NA	K7PJT4	Enterobacteria_phage	100.0	2.7e-98
WP_001217553.1|2607805_2608054_+	DinI-like family protein	NA	K7PLW4	Enterobacteria_phage	100.0	1.8e-38
WP_157925297.1|2608296_2609466_+	acyltransferase family protein	NA	A0A2H4IZR3	uncultured_Caudovirales_phage	34.6	9.9e-50
WP_069904755.1|2609477_2610077_-|tail	tail fiber assembly protein	tail	M1SV83	Escherichia_phage	70.7	4.7e-72
WP_172410216.1|2610076_2610775_-|tail	tail fiber protein	tail	K7P7Q7	Enterobacteria_phage	52.1	2.3e-46
WP_000051911.1|2610826_2611420_-	YmfQ family protein	NA	NA	NA	NA	NA
WP_001116110.1|2611416_2612559_-|plate	baseplate J/gp47 family protein	plate	A0A0A8WEY6	Clostridium_phage	34.8	6.2e-12
WP_001279799.1|2612560_2612998_-	phage GP46 family protein	NA	B5TK74	Pseudomonas_phage	45.8	4.0e-12
WP_172410217.1|2612994_2613579_-|plate	phage baseplate assembly protein	plate	A0A077KAY0	Edwardsiella_phage	30.8	6.3e-05
WP_001548480.1|2613575_2614661_-	hypothetical protein	NA	M1PVV2	Vibrio_phage	31.2	1.3e-43
WP_001139208.1|2614657_2616061_-	DNA circularization protein	NA	NA	NA	NA	NA
2615392:2615405	attL	TGGAGTTCAGGACA	NA	NA	NA	NA
WP_001548479.1|2616404_2618333_-	hypothetical protein	NA	A0A193GYI3	Enterobacter_phage	30.7	2.3e-19
WP_000807719.1|2618474_2618753_-|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_000896638.1|2618754_2619126_-|tail	phage tail tube protein	tail	NA	NA	NA	NA
WP_001472192.1|2619129_2620632_-|tail	phage tail sheath subtilisin-like domain-containing protein	tail	B5TK67	Pseudomonas_phage	42.2	7.1e-101
WP_000497745.1|2620628_2620826_-	DUF2635 domain-containing protein	NA	NA	NA	NA	NA
WP_001083242.1|2620829_2621375_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000537794.1|2621371_2621731_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001472191.1|2621735_2622146_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001472190.1|2622117_2623167_-|capsid	major capsid protein	capsid	V5Q8G6	Xylella_phage	33.7	1.6e-51
WP_001472189.1|2623264_2623669_-|head	head decoration protein	head	NA	NA	NA	NA
WP_001472856.1|2623668_2624259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001052909.1|2624260_2625127_-	S49 family peptidase	NA	A0A2D1GN02	Marinobacter_phage	37.9	4.8e-49
WP_001045359.1|2625123_2626761_-|portal	phage portal protein	portal	A0A291AUL8	Sinorhizobium_phage	35.2	3.3e-91
WP_000483309.1|2626760_2627024_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016239512.1|2627032_2629156_-|terminase	phage terminase large subunit family protein	terminase	A0A2K9V3X4	Faecalibacterium_phage	35.9	2.3e-97
WP_000210383.1|2629097_2629667_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001472855.1|2629957_2630461_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016245910.1|2630471_2631110_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016245909.1|2631171_2631414_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016245908.1|2631652_2631904_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016245907.1|2632132_2632408_-	hypothetical protein	NA	G8C7W1	Escherichia_phage	74.2	1.5e-25
WP_016245906.1|2632415_2633033_-	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	72.2	9.8e-81
WP_008323297.1|2633032_2633314_-|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	88.2	4.2e-39
WP_008323296.1|2633300_2633696_-|holin	phage holin family protein	holin	K7PHB9	Enterobacterial_phage	81.7	2.6e-50
WP_016245905.1|2633790_2634690_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016245904.1|2634702_2634903_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016245903.1|2635261_2635951_-	antitermination protein Q	NA	I6PDF8	Cronobacter_phage	52.4	1.6e-63
WP_016245902.1|2635947_2636085_-	YlcG family protein	NA	K7PHH3	Enterobacteria_phage	93.0	1.3e-17
WP_001472176.1|2636081_2636444_-	crossover junction endodeoxyribonuclease RusA	NA	K7PM48	Enterobacteria_phage	99.2	1.4e-63
WP_001472175.1|2636440_2636731_-	DUF1364 domain-containing protein	NA	K7PGZ6	Enterobacteria_phage	100.0	1.1e-50
WP_039022272.1|2636733_2636940_-	hypothetical protein	NA	K7PJT9	Enterobacteria_phage	100.0	8.7e-34
WP_039022273.1|2636939_2637542_-	DUF1367 family protein	NA	A0A0M4QX23	Salmonella_phage	91.0	2.3e-103
WP_039022274.1|2637642_2637894_-	hypothetical protein	NA	NA	NA	NA	NA
WP_039022275.1|2637893_2638151_-	DNA polymerase III subunit theta	NA	G8C7V1	Escherichia_phage	72.4	3.5e-24
WP_039022276.1|2638150_2638333_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172410218.1|2638488_2638899_-	hypothetical protein	NA	NA	NA	NA	NA
WP_039022278.1|2639780_2640092_-	hypothetical protein	NA	NA	NA	NA	NA
WP_039022279.1|2640110_2640860_-	ATP-binding protein	NA	S4TNF5	Salmonella_phage	86.7	9.6e-123
WP_016156235.1|2640862_2641810_-	hypothetical protein	NA	G9L6A8	Escherichia_phage	30.7	3.8e-23
WP_019076922.1|2641977_2642517_-	hypothetical protein	NA	K7PJT7	Enterobacteria_phage	86.6	1.1e-80
WP_016156233.1|2642548_2642779_-	helix-turn-helix domain-containing protein	NA	A0A2H4FNF3	Salmonella_phage	54.1	4.1e-16
WP_016247091.1|2642908_2643592_+	helix-turn-helix transcriptional regulator	NA	G8C7U1	Escherichia_phage	72.2	8.3e-89
WP_016247090.1|2643636_2643999_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001568763.1|2645188_2645395_+	hypothetical protein	NA	K7PM31	Enterobacteria_phage	100.0	1.5e-33
WP_000884659.1|2645406_2645568_+	hypothetical protein	NA	K7PGY4	Enterobacteria_phage	100.0	1.7e-24
WP_063614753.1|2645707_2649097_+	PD-(D/E)XK nuclease-like domain-containing protein	NA	K7P6V4	Enterobacteria_phage	93.9	0.0e+00
WP_000432226.1|2649108_2650221_+	recombinase RecT	NA	K7PKR8	Enterobacteria_phage	100.0	3.9e-205
WP_001237029.1|2650259_2650502_+	DUF4060 family protein	NA	K7PHF4	Enterobacteria_phage	100.0	4.0e-38
WP_172410219.1|2650737_2651931_-|integrase	tyrosine-type recombinase/integrase	integrase	K7PGY1	Enterobacteria_phage	99.5	1.9e-234
2652657:2652670	attR	TGTCCTGAACTCCA	NA	NA	NA	NA
>prophage 7
NZ_AP021894	Escherichia coli strain 2018-10-1CC	4701941	2883358	2897352	4701941	integrase	Enterobacteria_phage(50.0%)	19	2883672:2883686	2893521:2893535
WP_001120125.1|2883358_2884051_+	two-component system response regulator TorR	NA	W8CYM9	Bacillus_phage	28.0	4.5e-18
2883672:2883686	attL	AACTGCGCGAACTGG	NA	NA	NA	NA
WP_001264933.1|2884023_2885052_-	TMAO reductase system periplasmic protein TorT	NA	NA	NA	NA	NA
WP_086557823.1|2885607_2886279_+	CatB-related O-acetyltransferase	NA	M1HKK6	Paramecium_bursaria_Chlorella_virus	45.0	3.6e-20
WP_000753555.1|2888139_2888454_+	hypothetical protein	NA	K7PLT4	Enterobacteria_phage	100.0	1.2e-50
WP_172410235.1|2888470_2888752_+	hypothetical protein	NA	K7P7M4	Enterobacteria_phage	96.8	7.4e-44
WP_001214443.1|2888748_2888913_+	DUF2737 family protein	NA	K7P7R0	Enterobacteria_phage	100.0	1.1e-23
WP_172410236.1|2888909_2889428_+	hypothetical protein	NA	A5VWB1	Enterobacteria_phage	98.3	2.3e-91
WP_172410237.1|2889424_2890000_+	ead/Ea22-like family protein	NA	Q6H9Z5	Enterobacteria_phage	64.8	2.0e-75
WP_000360280.1|2890001_2890199_+	hypothetical protein	NA	A0A1I9SEY0	Klebsiella_phage	86.2	1.3e-31
WP_172410238.1|2890209_2890965_+	DUF551 domain-containing protein	NA	A0A1U9AJ59	Stx1_converting_phage	41.2	1.6e-45
WP_000545737.1|2891065_2891233_+	hypothetical protein	NA	A5VWB7	Enterobacteria_phage	100.0	9.8e-28
WP_001303849.1|2891272_2891491_+	excisionase	NA	Q77WA4	Escherichia_phage	100.0	3.7e-35
WP_060624675.1|2891468_2892542_+|integrase	tyrosine-type recombinase/integrase	integrase	Q9G075	Enterobacteria_phage	99.2	3.1e-199
WP_074169906.1|2892636_2895381_+	TMAO reductase system sensor histidine kinase/response regulator TorS	NA	A0A1V0SGX0	Hokovirus	32.2	2.7e-37
2893521:2893535	attR	CCAGTTCGCGCAGTT	NA	NA	NA	NA
WP_053887301.1|2895452_2896526_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_050554528.1|2896573_2896708_-	addiction module toxin, GnsA/GnsB family	NA	NA	NA	NA	NA
WP_001309400.1|2896735_2896966_-	protein YmcE	NA	NA	NA	NA	NA
WP_071524879.1|2896940_2897129_-	cold-shock protein	NA	NA	NA	NA	NA
WP_000066490.1|2897139_2897352_-	cold shock protein CspG	NA	A0A1W6JNX5	Morganella_phage	71.4	7.8e-22
>prophage 8
NZ_AP021894	Escherichia coli strain 2018-10-1CC	4701941	2959837	3033621	4701941	protease,tRNA,transposase	Bacillus_phage(20.0%)	54	NA	NA
WP_000117881.1|2959837_2961238_+|tRNA	asparagine--tRNA ligase	tRNA	A0A2K9V902	Bandra_megavirus	36.1	5.3e-82
WP_000977920.1|2961840_2962929_+	porin OmpF	NA	Q1MVN1	Enterobacteria_phage	54.3	1.8e-98
WP_000462687.1|2963113_2964304_+	aspartate transaminase	NA	NA	NA	NA	NA
WP_001109487.1|2964525_2965173_-	hydroxyacylglutathione hydrolase GloC	NA	NA	NA	NA	NA
WP_001295932.1|2965199_2965748_-	YcbK family protein	NA	A0A0K1LKR7	Rhodobacter_phage	33.7	7.0e-06
WP_000925985.1|2965928_2967776_-	L,D-transpeptidase	NA	NA	NA	NA	NA
WP_000572670.1|2968036_2972497_-	chromosome partition protein MukB	NA	NA	NA	NA	NA
WP_001295931.1|2972496_2973201_-	chromosome partition protein MukE	NA	NA	NA	NA	NA
WP_001288850.1|2973181_2974504_-	chromosome partition protein MukF	NA	NA	NA	NA	NA
WP_001298300.1|2974500_2975286_-|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	tRNA	NA	NA	NA	NA
WP_000899600.1|2975421_2976201_+	envelope biogenesis factor ElyC	NA	NA	NA	NA	NA
WP_000436922.1|2976177_2977071_-	YcbJ family phosphotransferase	NA	NA	NA	NA	NA
WP_000011603.1|2977224_2977971_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000350058.1|2977967_2978150_-	protein YcaR	NA	NA	NA	NA	NA
WP_000056538.1|2978201_2979434_-	winged helix DNA-binding protein YcaQ	NA	NA	NA	NA	NA
WP_000570539.1|2979470_2980457_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_000551270.1|2980453_2982202_-	lipid A ABC transporter ATP-binding protein/permease MsbA	NA	W8CYL7	Bacillus_phage	29.8	2.5e-57
WP_172410243.1|2982238_2984503_-	ComEC family protein	NA	NA	NA	NA	NA
WP_000167339.1|2984710_2984995_-	integration host factor subunit beta	NA	A7KV42	Bacillus_phage	40.2	3.2e-10
WP_000140327.1|2985154_2986828_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_000125016.1|2986938_2987622_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_001295345.1|2987794_2988559_-	metallopeptidase YcaL	NA	NA	NA	NA	NA
WP_000483766.1|2988694_2990041_-|transposase	IS4-like element IS4 family transposase	transposase	NA	NA	NA	NA
WP_000445249.1|2990166_2991450_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_000057149.1|2991520_2992609_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	46.8	3.5e-81
WP_000642849.1|2992807_2993500_-	DUF421 domain-containing protein	NA	NA	NA	NA	NA
WP_001295344.1|2993629_2995390_+	YcaO-like family protein	NA	NA	NA	NA	NA
WP_000642546.1|2995795_2996653_+	formate transporter FocA	NA	NA	NA	NA	NA
WP_001292822.1|2996707_2998990_+	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	41.5	1.0e-162
WP_000111043.1|2999181_2999922_+	pyruvate formate lyase 1-activating protein	NA	A0A2P0VNQ0	Tetraselmis_virus	26.5	8.0e-21
WP_001190363.1|3000003_3000594_-	NAD(P)H oxidoreductase	NA	NA	NA	NA	NA
WP_172410309.1|3001287_3002259_-|transposase	IS30-like element ISApl1 family transposase	transposase	W5R8L2	Staphylococcus_phage	38.8	7.5e-51
WP_039003037.1|3002351_3003074_-	PAP2 family protein	NA	NA	NA	NA	NA
WP_049589868.1|3003145_3004771_-	phosphoethanolamine--lipid A transferase MCR-1.1	NA	NA	NA	NA	NA
WP_172410309.1|3004966_3005938_-|transposase	IS30-like element ISApl1 family transposase	transposase	W5R8L2	Staphylococcus_phage	38.8	7.5e-51
WP_172410244.1|3006353_3007784_-	amino acid permease	NA	NA	NA	NA	NA
WP_000109295.1|3007993_3009142_-	MFS transporter	NA	NA	NA	NA	NA
WP_000165879.1|3009455_3010082_+	hydrolase	NA	NA	NA	NA	NA
WP_001300563.1|3010158_3011271_+|transposase	IS4-like element IS421 family transposase	transposase	NA	NA	NA	NA
WP_000534639.1|3011465_3012329_-	dimethyl sulfoxide reductase anchor subunit DmsC	NA	NA	NA	NA	NA
WP_000213098.1|3012330_3012948_-	dimethylsulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	60.6	5.0e-77
WP_000850306.1|3012958_3015403_-	dimethylsulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	49.8	6.6e-221
WP_000886683.1|3015641_3016934_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	48.2	1.5e-94
WP_000067755.1|3017024_3018368_-	replication-associated recombination protein RarA	NA	G3MBE0	Bacillus_virus	40.8	2.1e-80
WP_001295343.1|3018378_3018990_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_000077038.1|3019144_3023134_-	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	48.7	1.2e-86
WP_000228473.1|3023268_3023763_-	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA	NA
WP_000537418.1|3024307_3025273_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	44.6	8.5e-63
WP_001043578.1|3025395_3027162_+	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	NA	W8CYL7	Bacillus_phage	24.3	7.0e-23
WP_001202202.1|3027162_3028884_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	NA	W8CYL7	Bacillus_phage	25.2	4.9e-21
WP_001241676.1|3028925_3029630_+|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
WP_001040187.1|3029914_3030133_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_000934041.1|3030993_3033270_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.5	1.9e-166
WP_000520781.1|3033300_3033621_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	44.4	1.6e-13
>prophage 9
NZ_AP021894	Escherichia coli strain 2018-10-1CC	4701941	3660616	3668594	4701941	integrase	Enterobacteria_phage(28.57%)	8	3653630:3653643	3672766:3672779
3653630:3653643	attL	CTGTTGCTGCTGCT	NA	NA	NA	NA
WP_097476123.1|3660616_3661450_-	antA/AntB antirepressor family protein	NA	G9L6G1	Escherichia_phage	47.5	5.3e-21
WP_021542405.1|3661462_3661894_-	hypothetical protein	NA	A0A1W6JPH9	Morganella_phage	49.7	3.0e-28
WP_000083330.1|3661893_3662091_-	AlpA family transcriptional regulator	NA	A0A1V0E8E5	Vibrio_phage	48.1	1.7e-07
WP_172410267.1|3662288_3663170_-	hypothetical protein	NA	NA	NA	NA	NA
WP_021546205.1|3663312_3664527_-|integrase	tyrosine-type recombinase/integrase	integrase	Q7M297	Enterobacteria_phage	56.5	9.7e-133
WP_063614824.1|3664882_3666136_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	46.7	6.4e-95
WP_001285288.1|3666147_3667251_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.1e-61
WP_000749863.1|3667538_3668594_+	phosphoporin PhoE	NA	Q1MVN1	Enterobacteria_phage	61.1	9.1e-119
3672766:3672779	attR	CTGTTGCTGCTGCT	NA	NA	NA	NA
