assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_011404595.1_ASM1140459v1	NZ_AP021894	Escherichia coli strain 2018-10-1CC	1	1003598-1004114	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,csa3,PD-DExK,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG	28,28,29	0	0	NA	NA	I-E:I-E:I-E	8,8,8	8	Orphan	cas3,csa3,PD-DExK,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|47aa|up_1|NZ_AP021894.1_1002307_1002448_-,NA	NA|434aa|up_9|NZ_AP021894.1_990788_992090_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_AP021894.1_992137_994372_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_AP021894.1_994449_994698_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_AP021894.1_994697_995033_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_AP021894.1_995103_995895_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_AP021894.1_996122_997760_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_AP021894.1_997847_999146_+	PRK00077, eno, enolase; Provisional	NA|449aa|up_2|NZ_AP021894.1_999253_1000600_+	pfam13006, Nterm_IS4, Insertion element 4 transposase N-terminal	NA|47aa|up_1|NZ_AP021894.1_1002307_1002448_-	NA	NA|224aa|up_0|NZ_AP021894.1_1002586_1003258_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_AP021894.1_1004752_1006231_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_AP021894.1_1006257_1007535_-	cd06174, MFS, Major Facilitator Superfamily	NA|485aa|down_2|NZ_AP021894.1_1009485_1010940_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_3|NZ_AP021894.1_1010961_1012371_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_4|NZ_AP021894.1_1012348_1013128_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_5|NZ_AP021894.1_1013124_1013985_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_6|NZ_AP021894.1_1014132_1014708_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_7|NZ_AP021894.1_1014724_1014985_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_8|NZ_AP021894.1_1014975_1016247_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|121aa|down_9|NZ_AP021894.1_1016324_1016687_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)
GCF_011404595.1_ASM1140459v1	NZ_AP021894	Escherichia coli strain 2018-10-1CC	2	1026223-1027532	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas1,cas2	cas3,csa3,PD-DExK,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Unclear	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	21,21,9	21	Unclear	cas3,csa3,PD-DExK,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|287aa|up_9|NZ_AP021894.1_1013124_1013985_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|up_8|NZ_AP021894.1_1014132_1014708_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|up_7|NZ_AP021894.1_1014724_1014985_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|up_6|NZ_AP021894.1_1014975_1016247_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|121aa|up_5|NZ_AP021894.1_1016324_1016687_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_4|NZ_AP021894.1_1017005_1018805_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_3|NZ_AP021894.1_1018804_1020517_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_2|NZ_AP021894.1_1020590_1021325_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas1|306aa|up_1|NZ_AP021894.1_1024913_1025831_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_0|NZ_AP021894.1_1025832_1026117_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_AP021894.1_1027552_1028590_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_AP021894.1_1028841_1029750_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_AP021894.1_1029751_1031179_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_AP021894.1_1031178_1031784_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_AP021894.1_1031833_1032157_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_AP021894.1_1032350_1032662_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_AP021894.1_1032680_1033391_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_AP021894.1_1033390_1033870_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_AP021894.1_1033866_1034916_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_AP021894.1_1034896_1035658_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_011404595.1_ASM1140459v1	NZ_AP021894	Escherichia coli strain 2018-10-1CC	3	1534273-1534390	3	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|62aa|up_9|NZ_AP021894.1_1523558_1523744_-	PRK09956, PRK09956, ISNCY family transposase	NA|300aa|up_8|NZ_AP021894.1_1523756_1524656_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_AP021894.1_1524848_1526039_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_AP021894.1_1526035_1527295_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_AP021894.1_1527284_1528913_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_AP021894.1_1529185_1530544_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_AP021894.1_1530548_1531625_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_AP021894.1_1532087_1532738_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_AP021894.1_1532791_1533046_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_AP021894.1_1533045_1534176_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_AP021894.1_1534409_1536695_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|388aa|down_1|NZ_AP021894.1_1538347_1539510_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|241aa|down_2|NZ_AP021894.1_1542531_1543254_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_AP021894.1_1543400_1546028_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_AP021894.1_1546176_1547865_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_AP021894.1_1547861_1548485_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|NZ_AP021894.1_1548628_1553023_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|NZ_AP021894.1_1553023_1554673_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|NZ_AP021894.1_1554677_1555454_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|NZ_AP021894.1_1555527_1556712_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCF_011404595.1_ASM1140459v1	NZ_AP021894	Escherichia coli strain 2018-10-1CC	4	2186093-2186216	4	CRISPRCasFinder	no	DEDDh	cas3,csa3,PD-DExK,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA|30aa|down_7|NZ_AP021894.1_2195112_2195202_+	NA|471aa|up_9|NZ_AP021894.1_2175546_2176959_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_AP021894.1_2177515_2177725_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_AP021894.1_2178180_2178807_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_AP021894.1_2178827_2180930_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_AP021894.1_2180942_2181581_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_AP021894.1_2181644_2182313_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_AP021894.1_2182309_2183095_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_AP021894.1_2183098_2183911_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_AP021894.1_2183922_2185527_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_AP021894.1_2185652_2185958_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_AP021894.1_2186530_2187787_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_AP021894.1_2187827_2189201_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_AP021894.1_2189415_2190057_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_AP021894.1_2190096_2191245_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_AP021894.1_2191535_2192747_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_AP021894.1_2192859_2193792_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_AP021894.1_2193788_2194814_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_AP021894.1_2195112_2195202_+	NA	NA|390aa|down_8|NZ_AP021894.1_2195367_2196537_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_AP021894.1_2196771_2197353_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_011404595.1_ASM1140459v1	NZ_AP021894	Escherichia coli strain 2018-10-1CC	5	2873091-2873182	5	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|62aa|up_9|NZ_AP021894.1_2862166_2862352_-,NA	NA|62aa|up_9|NZ_AP021894.1_2862166_2862352_-	NA	NA|1321aa|up_8|NZ_AP021894.1_2862430_2866393_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_AP021894.1_2866432_2867071_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_AP021894.1_2867358_2868450_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_AP021894.1_2868449_2869142_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_AP021894.1_2869153_2869540_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_AP021894.1_2869547_2870348_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_AP021894.1_2870357_2870948_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_AP021894.1_2870958_2871453_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_AP021894.1_2871473_2872802_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_AP021894.1_2873605_2874202_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_AP021894.1_2874222_2874450_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_AP021894.1_2874487_2875729_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|307aa|down_3|NZ_AP021894.1_2877537_2878458_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_4|NZ_AP021894.1_2878457_2878763_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_5|NZ_AP021894.1_2878914_2879514_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_6|NZ_AP021894.1_2879510_2882057_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_7|NZ_AP021894.1_2882056_2883229_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_8|NZ_AP021894.1_2883358_2884051_+	PRK10766, PRK10766, two-component system response regulator TorR	NA|343aa|down_9|NZ_AP021894.1_2884023_2885052_-	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional
GCF_011404595.1_ASM1140459v1	NZ_AP021894	Escherichia coli strain 2018-10-1CC	6	3166228-3166372	6	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|252aa|up_1|NZ_AP021894.1_3162736_3163492_+,NA	NA|430aa|up_9|NZ_AP021894.1_3148930_3150220_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_8|NZ_AP021894.1_3150278_3150755_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|444aa|up_7|NZ_AP021894.1_3151500_3152832_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|195aa|up_6|NZ_AP021894.1_3152905_3153490_-	pfam02413, Caudo_TAP, Caudovirales tail fibre assembly protein, lambda gpK	NA|1076aa|up_5|NZ_AP021894.1_3153489_3156717_-	pfam08400, phage_tail_N, Prophage tail fibre N-terminal	NA|200aa|up_4|NZ_AP021894.1_3156781_3157381_-	pfam06316, Ail_Lom, Enterobacterial Ail/Lom protein	NA|486aa|up_3|NZ_AP021894.1_3160382_3161840_-	pfam02386, TrkH, Cation transport protein	NA|136aa|up_2|NZ_AP021894.1_3162327_3162735_+	pfam13935, Ead_Ea22, Ead/Ea22-like protein	NA|252aa|up_1|NZ_AP021894.1_3162736_3163492_+	NA	NA|428aa|up_0|NZ_AP021894.1_3164878_3166162_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_AP021894.1_3166395_3168657_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|351aa|down_1|NZ_AP021894.1_3171124_3172177_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_2|NZ_AP021894.1_3172360_3173314_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_3|NZ_AP021894.1_3173354_3174350_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_4|NZ_AP021894.1_3174504_3175323_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_5|NZ_AP021894.1_3175323_3176382_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_6|NZ_AP021894.1_3176384_3177074_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_7|NZ_AP021894.1_3177073_3177847_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_8|NZ_AP021894.1_3178012_3178162_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ	NA|263aa|down_9|NZ_AP021894.1_3178290_3179079_+	PRK10676, PRK10676, DNA-binding transcriptional regulator ModE; Provisional
GCF_011404595.1_ASM1140459v1	NZ_AP021894	Escherichia coli strain 2018-10-1CC	7	3413713-3413809	7	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|231aa|up_9|NZ_AP021894.1_3405508_3406201_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|NZ_AP021894.1_3406420_3406963_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|NZ_AP021894.1_3407433_3408300_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_AP021894.1_3408301_3408514_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_AP021894.1_3408621_3409143_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_AP021894.1_3409178_3410564_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_AP021894.1_3410737_3411232_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_AP021894.1_3411234_3411957_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_AP021894.1_3412074_3412584_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_AP021894.1_3412580_3413648_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_AP021894.1_3413842_3414736_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_AP021894.1_3414732_3415548_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_AP021894.1_3415558_3416818_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|293aa|down_3|NZ_AP021894.1_3420692_3421571_-	PRK15059, PRK15059, 2-hydroxy-3-oxopropionate reductase	NA|259aa|down_4|NZ_AP021894.1_3421670_3422447_-	PRK09997, PRK09997, hydroxypyruvate isomerase; Provisional	NA|594aa|down_5|NZ_AP021894.1_3422459_3424241_-	PRK11269, PRK11269, glyoxylate carboligase; Provisional	NA|272aa|down_6|NZ_AP021894.1_3424330_3425146_-	PRK10163, PRK10163, HTH-type transcriptional repressor AllR	NA|161aa|down_7|NZ_AP021894.1_3425223_3425706_-	COG3194, DAL3, Ureidoglycolate hydrolase [Nucleotide transport and metabolism]	NA|309aa|down_8|NZ_AP021894.1_3425935_3426862_+	PRK10094, PRK10094, HTH-type transcriptional activator AllS	NA|365aa|down_9|NZ_AP021894.1_3426930_3428025_+	COG2603, COG2603, Predicted ATPase [General function prediction only]
GCF_011404595.1_ASM1140459v1	NZ_AP021894	Escherichia coli strain 2018-10-1CC	8	3885768-3885903	3	PILER-CR	no		cas3,csa3,PD-DExK,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	TGAATCACCAATATTGAAAA	20	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,PD-DExK,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|126aa|up_9|NZ_AP021894.1_3876474_3876852_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|281aa|up_8|NZ_AP021894.1_3876858_3877701_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|160aa|up_7|NZ_AP021894.1_3877778_3878258_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_AP021894.1_3878449_3880312_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_AP021894.1_3880304_3880835_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_AP021894.1_3880942_3882274_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_AP021894.1_3882332_3882620_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_AP021894.1_3882616_3883903_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_AP021894.1_3883953_3884895_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_AP021894.1_3884909_3885680_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_AP021894.1_3886152_3887667_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_AP021894.1_3887697_3888840_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_AP021894.1_3888968_3890186_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_AP021894.1_3890259_3891813_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_AP021894.1_3891921_3892707_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_AP021894.1_3892712_3893303_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_AP021894.1_3893511_3893907_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_7|NZ_AP021894.1_3894168_3897390_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_AP021894.1_3897407_3898556_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_AP021894.1_3899011_3899833_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
GCF_011404595.1_ASM1140459v1	NZ_AP021894	Escherichia coli strain 2018-10-1CC	9	3893341-3893482	8	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	GCTGGAGAGCAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGA	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|96aa|up_9|NZ_AP021894.1_3882332_3882620_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_8|NZ_AP021894.1_3882616_3883903_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_7|NZ_AP021894.1_3883953_3884895_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_6|NZ_AP021894.1_3884909_3885680_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|up_5|NZ_AP021894.1_3886152_3887667_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|up_4|NZ_AP021894.1_3887697_3888840_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|up_3|NZ_AP021894.1_3888968_3890186_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|up_2|NZ_AP021894.1_3890259_3891813_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|up_1|NZ_AP021894.1_3891921_3892707_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|up_0|NZ_AP021894.1_3892712_3893303_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_0|NZ_AP021894.1_3893511_3893907_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_1|NZ_AP021894.1_3894168_3897390_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_2|NZ_AP021894.1_3897407_3898556_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_3|NZ_AP021894.1_3899011_3899833_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|305aa|down_4|NZ_AP021894.1_3899999_3900914_-	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional	NA|317aa|down_5|NZ_AP021894.1_3900979_3901930_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|150aa|down_6|NZ_AP021894.1_3901931_3902381_-	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional	NA|165aa|down_7|NZ_AP021894.1_3902468_3902963_-	PRK00376, lspA, lipoprotein signal peptidase	NA|939aa|down_8|NZ_AP021894.1_3902962_3905779_-	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|314aa|down_9|NZ_AP021894.1_3905821_3906763_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase
