The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP050080	Rhizobium leguminosarum bv. trifolii strain 31B chromosome, complete genome	5178457	392444	427160	5178457	protease,head,tRNA,capsid,portal,tail	Rhizobium_phage(26.32%)	38	NA	NA
WP_130762300.1|392444_393401_+|protease	trypsin-like serine protease	protease	A0A1B1IRH0	uncultured_Mediterranean_phage	33.3	1.2e-13
WP_130686593.1|393438_394461_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_130686591.1|395793_396006_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_130814695.1|396100_396493_+	hypothetical protein	NA	NA	NA	NA	NA
WP_166477415.1|396763_399091_+	DUF3987 domain-containing protein	NA	NA	NA	NA	NA
WP_166477309.1|399319_399721_+	hypothetical protein	NA	NA	NA	NA	NA
WP_166477416.1|399720_400884_+	hypothetical protein	NA	NA	NA	NA	NA
WP_166477310.1|401023_401713_-	hypothetical protein	NA	NA	NA	NA	NA
WP_166477311.1|402718_403105_+	hypothetical protein	NA	A0A0U2C0X7	Paracoccus_phage	36.8	4.3e-10
WP_166477312.1|405027_406275_+|portal	phage portal protein	portal	B0VK31	Azospirillum_phage	44.0	3.1e-94
WP_166477313.1|406271_407027_+|head,protease	HK97 family phage prohead protease	head,protease	A0A2D1GNL2	Pseudomonas_phage	41.1	1.2e-24
WP_166477314.1|407081_408368_+|capsid	phage major capsid protein	capsid	B0VK33	Azospirillum_phage	33.4	1.7e-47
WP_130814686.1|408424_408811_+	hypothetical protein	NA	A0A142K633	Streptomyces_phage	46.8	7.6e-15
WP_166477315.1|409043_409613_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A286S294	Klebsiella_phage	45.6	9.5e-06
WP_166477316.1|409629_410040_+	hypothetical protein	NA	B4UTP8	Rhizobium_phage	58.3	4.0e-30
WP_166477317.1|410204_410561_+|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
WP_166477318.1|410560_411055_+	HK97 gp10 family phage protein	NA	NA	NA	NA	NA
WP_166477319.1|411058_411469_+	DUF3168 domain-containing protein	NA	NA	NA	NA	NA
WP_166477320.1|411509_411941_+|tail	phage tail protein	tail	NA	NA	NA	NA
WP_166477321.1|411964_412324_+	hypothetical protein	NA	NA	NA	NA	NA
WP_130686572.1|412344_412533_+|tail	phage tail assembly chaperone	tail	NA	NA	NA	NA
WP_166477322.1|412529_413006_-	YbjQ family protein	NA	M4STD1	Rhodobacter_phage	40.0	1.4e-23
WP_166477323.1|413063_416210_+|tail	tail length tape measure protein	tail	A0A076G7H2	Sinorhizobium_phage	42.0	5.5e-111
WP_166477324.1|416206_416557_+	hypothetical protein	NA	NA	NA	NA	NA
WP_166477325.1|416553_417057_+	DUF1833 family protein	NA	A0A1B0T6D7	Thiobacimonas_phage	29.8	6.0e-12
WP_166477326.1|417056_417527_+	C40 family peptidase	NA	G8GWF9	Rhodobacter_phage	36.8	4.9e-16
WP_166477327.1|417441_421083_+	hypothetical protein	NA	G8GWG0	Rhodobacter_phage	30.2	1.0e-92
WP_166477328.1|421079_422222_+	hypothetical protein	NA	L7TMF7	Rhizobium_phage	52.0	1.7e-70
WP_166477329.1|422221_422578_+	hypothetical protein	NA	L7TJM3	Rhizobium_phage	37.4	1.2e-14
WP_130686563.1|422574_423003_+	hypothetical protein	NA	NA	NA	NA	NA
WP_166477330.1|423031_423286_+	hypothetical protein	NA	NA	NA	NA	NA
WP_166477417.1|423317_423755_+	lysozyme	NA	A0A0K1Y6F2	Rhodobacter_phage	43.7	5.2e-28
WP_130686560.1|423751_424123_+	hypothetical protein	NA	NA	NA	NA	NA
WP_166477331.1|424043_424355_+	dehydrogenase	NA	NA	NA	NA	NA
WP_130686558.1|424351_424693_+	hypothetical protein	NA	B4UTS1	Rhizobium_phage	64.3	5.8e-35
WP_130686557.1|425321_425513_-	hypothetical protein	NA	NA	NA	NA	NA
WP_166477332.1|425653_425917_+	hypothetical protein	NA	A0A1J0GUZ4	Halomonas_phage	40.9	9.8e-06
WP_166477333.1|425909_427160_+	hypothetical protein	NA	A0A068CDE5	Rhizobium_phage	78.3	2.1e-170
>prophage 2
NZ_CP050080	Rhizobium leguminosarum bv. trifolii strain 31B chromosome, complete genome	5178457	1150587	1160853	5178457		uncultured_Mediterranean_phage(83.33%)	9	NA	NA
WP_003539661.1|1150587_1151097_-	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	59.4	2.5e-45
WP_130655513.1|1151126_1151699_-	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	54.4	2.0e-43
WP_130762253.1|1151741_1152236_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	37.2	1.0e-24
WP_024321987.1|1152372_1152651_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003539654.1|1152784_1152940_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024321986.1|1153277_1156127_-	DNA gyrase subunit A	NA	A0A1B1IVS2	uncultured_Mediterranean_phage	41.3	8.3e-74
WP_018069570.1|1156364_1157012_+	MarC family protein	NA	NA	NA	NA	NA
WP_024321985.1|1157141_1157648_-	single-stranded DNA-binding protein	NA	R9TP78	Rhizobium_phage	57.1	7.1e-45
WP_018494639.1|1157931_1160853_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	62.2	0.0e+00
>prophage 3
NZ_CP050080	Rhizobium leguminosarum bv. trifolii strain 31B chromosome, complete genome	5178457	1305748	1347822	5178457	protease,transposase,lysis,integrase	uncultured_Mediterranean_phage(25.0%)	42	1300572:1300586	1348663:1348677
1300572:1300586	attL	GCGCACGCTGCCGGA	NA	NA	NA	NA
WP_018073463.1|1305748_1306882_-|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_018073462.1|1306910_1307741_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_018484698.1|1307740_1308484_-	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	41.9	5.2e-20
WP_017964143.1|1308521_1309082_-	ribosome recycling factor	NA	NA	NA	NA	NA
WP_003539289.1|1309134_1309857_-	UMP kinase	NA	NA	NA	NA	NA
WP_018073460.1|1309953_1310880_-	elongation factor Ts	NA	NA	NA	NA	NA
WP_018073459.1|1311135_1311903_-	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_018073458.1|1312084_1313191_-	solute-binding protein	NA	NA	NA	NA	NA
WP_018073457.1|1313190_1313808_-|lysis	5-bromo-4-chloroindolyl phosphate hydrolysis protein	lysis	NA	NA	NA	NA
WP_130762559.1|1313815_1315384_-	solute-binding protein	NA	NA	NA	NA	NA
WP_024320703.1|1315398_1316475_-	toxic anion resistance protein	NA	H6X3X9	Enterobacteria_phage	22.4	3.5e-09
WP_018073454.1|1316666_1317503_-	cell envelope integrity EipB family protein	NA	NA	NA	NA	NA
WP_024320702.1|1317639_1318110_+	RidA family protein	NA	NA	NA	NA	NA
WP_024320701.1|1318106_1318826_+	glycerophosphodiester phosphodiesterase	NA	A0A1J0F961	Only_Syngen_Nebraska_virus	27.5	1.2e-13
WP_024320700.1|1318904_1320095_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_024320699.1|1320250_1320682_+	HIT family protein	NA	NA	NA	NA	NA
WP_018073449.1|1320739_1321030_+	Dabb family protein	NA	NA	NA	NA	NA
WP_018073448.1|1321102_1323595_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.8	2.9e-171
WP_017988219.1|1323605_1323956_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.1	1.7e-13
WP_018073447.1|1324232_1324604_-	phasin family protein	NA	NA	NA	NA	NA
WP_003539277.1|1324878_1325082_-	DUF3126 family protein	NA	NA	NA	NA	NA
WP_011651805.1|1325222_1326056_-	serine O-acetyltransferase	NA	NA	NA	NA	NA
WP_024320698.1|1326184_1326970_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_018073445.1|1327128_1327374_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_024320697.1|1327401_1328556_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_018073443.1|1328587_1329778_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_024320696.1|1330139_1331165_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	44.9	6.6e-82
WP_024320695.1|1331268_1332471_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_024320694.1|1332472_1333627_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_018073440.1|1333662_1334436_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.6	1.2e-32
WP_130661506.1|1334597_1335263_-	hypothetical protein	NA	NA	NA	NA	NA
WP_018073439.1|1335664_1336093_+	DUF3597 domain-containing protein	NA	NA	NA	NA	NA
WP_130681589.1|1336305_1336617_+	hypothetical protein	NA	NA	NA	NA	NA
WP_017964118.1|1336769_1336949_-	hypothetical protein	NA	NA	NA	NA	NA
WP_130762235.1|1337402_1337750_+	hypothetical protein	NA	NA	NA	NA	NA
WP_018073436.1|1337873_1338164_+	DUF982 domain-containing protein	NA	NA	NA	NA	NA
WP_130681585.1|1338860_1340915_+	RTX toxin	NA	NA	NA	NA	NA
WP_130762234.1|1341143_1341677_-	chloramphenicol phosphotransferase	NA	NA	NA	NA	NA
WP_130682780.1|1343437_1343938_+	hypothetical protein	NA	NA	NA	NA	NA
WP_130762233.1|1344187_1345231_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_075223909.1|1345547_1345880_+	nuclease	NA	G8DH70	Emiliania_huxleyi_virus	39.3	4.0e-12
WP_130838787.1|1346424_1347822_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
1348663:1348677	attR	TCCGGCAGCGTGCGC	NA	NA	NA	NA
>prophage 4
NZ_CP050080	Rhizobium leguminosarum bv. trifolii strain 31B chromosome, complete genome	5178457	1429064	1442447	5178457	tRNA	uncultured_Mediterranean_phage(90.91%)	13	NA	NA
WP_024320660.1|1429064_1431605_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	48.6	1.3e-57
WP_003558894.1|1431650_1431998_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	39.1	2.4e-12
WP_018073382.1|1432204_1433077_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_024320659.1|1433325_1434930_-	peptidoglycan DD-metalloendopeptidase family protein	NA	I3PV24	Clostridium_phage	29.2	5.1e-12
WP_064251154.1|1435171_1435825_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.1	2.6e-15
WP_018481196.1|1435821_1436595_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	30.2	4.0e-23
WP_024320657.1|1436599_1437883_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	45.3	8.2e-98
WP_003558883.1|1437984_1438812_-	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	46.5	3.0e-53
WP_024320656.1|1438808_1439420_-	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
WP_018073376.1|1439471_1439663_-	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	69.8	5.8e-08
WP_018481201.1|1439844_1440561_-	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	47.0	2.6e-40
WP_024320655.1|1440557_1441415_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	38.5	2.5e-34
WP_024320654.1|1441433_1442447_-	beta-N-acetylhexosaminidase	NA	A0A1B1IVS3	uncultured_Mediterranean_phage	42.7	2.5e-25
>prophage 5
NZ_CP050080	Rhizobium leguminosarum bv. trifolii strain 31B chromosome, complete genome	5178457	1798085	1807130	5178457		Escherichia_phage(28.57%)	9	NA	NA
WP_130762211.1|1798085_1800053_+	glycosyltransferase family 1 protein	NA	A0A0G2Y9S0	Acanthamoeba_polyphaga_mimivirus	27.5	6.7e-06
WP_105005630.1|1800077_1800656_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A1D8EQH2	Escherichia_phage	41.0	1.4e-36
WP_105005629.1|1800662_1801718_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	51.8	1.7e-96
WP_130681465.1|1801721_1802609_+	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_130664388.1|1802619_1803489_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	K7QKA7	Escherichia_phage	59.2	6.8e-96
WP_130664387.1|1803609_1804221_-	riboflavin synthase	NA	A0A2I2L4R9	Orpheovirus	35.4	2.0e-17
WP_130664386.1|1804220_1805342_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	34.3	2.7e-36
WP_003547190.1|1805345_1805822_-	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_018070506.1|1805831_1807130_-	serine hydroxymethyltransferase	NA	A0A219Y950	Aeromonas_phage	51.5	9.8e-99
>prophage 6
NZ_CP050080	Rhizobium leguminosarum bv. trifolii strain 31B chromosome, complete genome	5178457	4137228	4147292	5178457		Mycobacterium_phage(25.0%)	9	NA	NA
WP_130665162.1|4137228_4139514_+	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	40.8	2.4e-124
WP_017968025.1|4140265_4140487_+	glutaredoxin-like protein NrdH	NA	V5UN81	Mycobacterium_phage	53.4	3.6e-17
WP_024323811.1|4140496_4140901_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A142F1R4	Bacillus_phage	44.8	6.5e-17
WP_024323812.1|4140879_4143084_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	V9VI16	Lactococcus_phage	52.1	4.3e-211
WP_024323813.1|4143170_4144145_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	R4TBI6	Mycobacterium_phage	74.1	1.6e-138
WP_130682510.1|4144249_4145482_+	adenylate/guanylate cyclase domain-containing protein	NA	M1HLN3	Pelagibacter_phage	29.3	1.9e-14
WP_024323815.1|4145500_4146229_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	38.8	9.0e-41
WP_024323816.1|4146225_4146582_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_024323817.1|4146581_4147292_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2P1JXV3	Rhodococcus_phage	49.6	7.1e-51
>prophage 7
NZ_CP050080	Rhizobium leguminosarum bv. trifolii strain 31B chromosome, complete genome	5178457	5100254	5113783	5178457		Vibrio_phage(25.0%)	9	NA	NA
WP_130762340.1|5100254_5101460_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	33.0	1.3e-39
WP_018242983.1|5101732_5102188_+	GatB/YqeY domain-containing protein	NA	A0A292GL36	Xanthomonas_phage	38.7	6.9e-15
WP_130762339.1|5102191_5103082_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075224500.1|5103752_5105762_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.5	1.6e-87
WP_130760930.1|5105761_5107630_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.7	1.1e-77
WP_130760929.1|5107800_5108529_+	class I SAM-dependent methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	42.8	9.5e-51
WP_018074037.1|5108694_5109882_+	glycine C-acetyltransferase	NA	D2TEZ5	Emiliania_huxleyi_virus	28.6	1.5e-37
WP_130664892.1|5109992_5111030_+	L-threonine 3-dehydrogenase	NA	R9TPW0	Vibrio_phage	68.6	7.1e-15
WP_018074040.1|5111725_5113783_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	33.6	1.7e-36
>prophage 1
NZ_CP050084	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b2, complete sequence	511522	218852	306115	511522	transposase,integrase,protease	Ochrobactrum_phage(22.22%)	51	236488:236503	304465:304480
WP_166477473.1|218852_219614_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_166477471.1|219939_221088_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_003551659.1|221280_221607_+	hypothetical protein	NA	NA	NA	NA	NA
WP_018483756.1|222275_222647_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042941685.1|224382_225648_-	plasmid replication protein RepCa2	NA	NA	NA	NA	NA
WP_027689819.1|225886_226927_-	plasmid partitioning protein RepB	NA	A0A240F4U0	Ochrobactrum_phage	38.3	9.2e-39
WP_027689818.1|226911_228129_-	plasmid partitioning protein RepA	NA	A0A240F4U1	Ochrobactrum_phage	47.8	1.2e-93
WP_027689817.1|228493_229117_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_018495925.1|230868_231579_-	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
WP_027689815.1|233777_235736_+	elongation factor G	NA	NA	NA	NA	NA
236488:236503	attL	GCAGACGATCCGAAGC	NA	NA	NA	NA
WP_018068576.1|237034_237799_-	slipin family protein	NA	A0A2K9L035	Tupanvirus	29.5	3.4e-22
WP_130690324.1|237827_239177_-	nodulation protein NfeD	NA	NA	NA	NA	NA
WP_165417481.1|239699_240011_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_085065918.1|240085_240427_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_027689811.1|240476_240662_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042941683.1|241853_242807_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_085994721.1|243115_244105_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_027689809.1|244556_245297_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_027689808.1|245901_246612_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	24.9	7.5e-08
WP_027689807.1|246601_247996_+	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_027689806.1|248131_249493_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_027689805.1|249508_250573_-	ornithine cyclodeaminase	NA	NA	NA	NA	NA
WP_020397333.1|250933_251797_-	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA	NA
WP_027689804.1|251793_252447_-	dimethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_130688986.1|252491_253358_-	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_130657836.1|253478_254564_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.8	4.2e-26
WP_018068592.1|254560_255364_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_018068593.1|255360_256260_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_027689800.1|256270_257314_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_018068605.1|259893_260202_+	WGR domain-containing protein	NA	NA	NA	NA	NA
WP_018068606.1|260490_260802_-	DUF736 domain-containing protein	NA	NA	NA	NA	NA
WP_018068607.1|261546_262089_-	hypothetical protein	NA	NA	NA	NA	NA
WP_018068608.1|262088_262397_-	DUF1778 domain-containing protein	NA	NA	NA	NA	NA
WP_027689799.1|262966_264496_-	SulP family inorganic anion transporter	NA	NA	NA	NA	NA
WP_018068610.1|264500_265205_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_130663678.1|265736_266297_-	hypothetical protein	NA	NA	NA	NA	NA
WP_027689797.1|266427_267090_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_018068064.1|267593_268358_-	response regulator	NA	W8CYM9	Bacillus_phage	35.1	8.3e-29
WP_027689796.1|268623_269133_-	invasion protein	NA	NA	NA	NA	NA
WP_166477472.1|280107_285213_+	amino acid adenylation domain-containing protein	NA	A0A2K9KZV5	Tupanvirus	26.4	3.8e-138
WP_027689789.1|286905_287454_+	hypothetical protein	NA	NA	NA	NA	NA
WP_130663931.1|291958_293431_+	benzaldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_027689891.1|294658_295588_+	alpha/beta hydrolase	NA	A0A2P1EM31	Moumouvirus	26.7	5.0e-12
WP_130663929.1|295610_296327_+|transposase	IS6 family transposase	transposase	NA	NA	NA	NA
WP_156925176.1|297525_298251_+	hypothetical protein	NA	NA	NA	NA	NA
WP_027689888.1|298432_299146_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_130689793.1|302107_302968_-|integrase	tyrosine-type recombinase/integrase	integrase	S5W9T9	Leptospira_phage	33.5	9.0e-32
WP_027688354.1|303101_303302_-	hypothetical protein	NA	NA	NA	NA	NA
WP_051320192.1|304113_304746_+	NYN domain-containing protein	NA	NA	NA	NA	NA
304465:304480	attR	GCAGACGATCCGAAGC	NA	NA	NA	NA
WP_130663926.1|305175_305718_-|protease	omptin family outer membrane protease	protease	NA	NA	NA	NA
WP_130683353.1|305599_306115_-|protease	omptin family outer membrane protease	protease	NA	NA	NA	NA
>prophage 2
NZ_CP050084	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b2, complete sequence	511522	432698	456268	511522	transposase,tail	Leptospira_phage(33.33%)	17	NA	NA
WP_130683361.1|432698_434072_+|transposase	ISNCY family transposase	transposase	A1YTJ2	Porcine_endogenous_retrovirus	27.3	3.0e-05
WP_027688456.1|435670_436321_-	porin family protein	NA	NA	NA	NA	NA
WP_130661517.1|437257_437524_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_027688458.1|438041_438785_+	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
WP_130683385.1|439039_440228_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	44.4	1.7e-52
WP_027688461.1|440817_441477_-|tail	tail fiber protein	tail	A0A291LA10	Bordetella_phage	38.5	2.9e-14
WP_027688462.1|441525_442221_-	hypothetical protein	NA	NA	NA	NA	NA
WP_027688463.1|442787_443354_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_017958612.1|443665_443824_+	hypothetical protein	NA	NA	NA	NA	NA
WP_027688465.1|445813_447370_+|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
WP_027688466.1|447828_448056_+	hypothetical protein	NA	NA	NA	NA	NA
WP_027688469.1|450008_451136_+	hypothetical protein	NA	NA	NA	NA	NA
WP_165418154.1|452445_452655_+	hypothetical protein	NA	NA	NA	NA	NA
WP_165406167.1|453409_453586_-	hypothetical protein	NA	NA	NA	NA	NA
WP_130661511.1|453828_455424_-|transposase	IS66 family transposase	transposase	A0A218MNE7	uncultured_virus	31.5	2.6e-56
WP_130661512.1|455478_455832_-	IS66 family insertion sequence element accessory protein TnpB	NA	S5VXZ8	Leptospira_phage	45.2	2.7e-19
WP_130681969.1|455812_456268_-|transposase	transposase	transposase	A0A0P0ZBP6	Stx2-converting_phage	51.8	2.9e-05
>prophage 1
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	0	3710	644077		Ochrobactrum_phage(50.0%)	2	NA	NA
WP_130676310.1|1213_2203_+	plasmid partitioning protein RepB	NA	A0A240F4U0	Ochrobactrum_phage	36.9	2.4e-44
WP_130688975.1|2402_3710_+	replication initiation protein RepC	NA	L7TKN6	Rhizobium_phage	26.2	8.6e-18
>prophage 2
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	12343	18094	644077		Indivirus(50.0%)	3	NA	NA
WP_130689229.1|12343_13735_-	hypothetical protein	NA	A0A1V0SCZ9	Indivirus	30.5	9.5e-07
WP_130762667.1|13742_14609_-	hypothetical protein	NA	NA	NA	NA	NA
WP_130689224.1|14695_18094_-	UvrD-helicase domain-containing protein	NA	G3MA40	Bacillus_virus	26.0	4.5e-34
>prophage 3
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	36843	37461	644077		Cyanophage(100.0%)	1	NA	NA
WP_130689231.1|36843_37461_+	hypothetical protein	NA	A0A0H4SQ70	Cyanophage	33.5	3.4e-17
>prophage 4
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	43972	44995	644077	transposase	Streptococcus_phage(100.0%)	1	NA	NA
WP_130689234.1|43972_44995_-|transposase	IS110 family transposase	transposase	A0A1X9I5Z0	Streptococcus_phage	27.1	4.5e-06
>prophage 5
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	51524	57715	644077	transposase	Leptospira_phage(25.0%)	5	NA	NA
WP_166477452.1|51524_52672_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	40.8	2.4e-48
WP_130688336.1|53046_54246_-|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	48.2	1.5e-93
WP_130688988.1|55201_55537_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_130688989.1|55634_56525_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	30.9	1.8e-06
WP_130688990.1|56794_57715_+	DUF1738 domain-containing protein	NA	A0A1V0EEV1	Caulobacter_phage	47.2	2.1e-63
>prophage 6
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	72513	74289	644077		Planktothrix_phage(100.0%)	1	NA	NA
WP_130688995.1|72513_74289_+	amino acid ABC transporter permease/ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.2	5.4e-31
>prophage 7
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	81135	82775	644077		Bacillus_virus(100.0%)	2	NA	NA
WP_130688999.1|81135_81990_-	ABC transporter permease subunit	NA	G3M9Y4	Bacillus_virus	27.6	7.8e-20
WP_062944783.1|81986_82775_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.5	6.3e-32
>prophage 8
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	87343	88189	644077		Mycobacterium_phage(100.0%)	1	NA	NA
WP_130689002.1|87343_88189_+	alpha/beta fold hydrolase	NA	A0A249XPN5	Mycobacterium_phage	32.6	5.2e-08
>prophage 9
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	94798	95878	644077		Bacillus_virus(100.0%)	1	NA	NA
WP_130680745.1|94798_95878_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	39.3	7.3e-31
>prophage 10
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	98976	104061	644077		Synechococcus_phage(66.67%)	4	NA	NA
WP_166477454.1|98976_100194_-	NAD(P)-dependent oxidoreductase	NA	A0A2D2W2J1	Stenotrophomonas_phage	30.7	2.7e-05
WP_018071769.1|100203_101184_-	GHMP kinase	NA	A0A222YW25	Synechococcus_phage	30.5	8.4e-34
WP_130689010.1|101180_103130_-	HAD-IIIA family hydrolase	NA	NA	NA	NA	NA
WP_024322589.1|103119_104061_-	SDR family NAD(P)-dependent oxidoreductase	NA	A0A0E3FNQ3	Synechococcus_phage	29.0	7.1e-22
>prophage 11
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	108293	108920	644077		Caulobacter_phage(100.0%)	1	NA	NA
WP_024322586.1|108293_108920_-	SIS domain-containing protein	NA	A0A067XQR2	Caulobacter_phage	36.7	9.2e-18
>prophage 12
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	112813	113896	644077		Bacillus_virus(100.0%)	1	NA	NA
WP_130657561.1|112813_113896_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.6e-22
>prophage 13
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	118056	119034	644077		Bacillus_virus(100.0%)	1	NA	NA
WP_130689018.1|118056_119034_-	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G3M9Y6	Bacillus_virus	35.8	5.4e-25
>prophage 14
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	125691	126708	644077		Enterobacteria_phage(100.0%)	1	NA	NA
WP_130663051.1|125691_126708_-	LacI family transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	29.6	5.1e-26
>prophage 15
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	131993	133094	644077		Bacillus_virus(100.0%)	1	NA	NA
WP_130689025.1|131993_133094_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G3M9Y6	Bacillus_virus	32.4	8.3e-22
>prophage 16
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	145598	147706	644077		Bacillus_virus(50.0%)	2	NA	NA
WP_032989428.1|145598_146648_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.6	1.3e-05
WP_032989426.1|146644_147706_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	30.6	1.2e-17
>prophage 17
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	151320	152337	644077		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_130689033.1|151320_152337_+	hydroxyacid dehydrogenase	NA	M1HST2	Paramecium_bursaria_Chlorella_virus	26.9	5.5e-12
>prophage 18
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	155916	162350	644077		Bacillus_phage(66.67%)	4	NA	NA
WP_027688882.1|155916_159063_-	efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	23.0	2.1e-62
WP_027688881.1|159062_160136_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_018071821.1|160371_161058_+	response regulator	NA	W8CYM9	Bacillus_phage	32.4	1.9e-29
WP_130689034.1|161060_162350_+	HAMP domain-containing protein	NA	W8CYF6	Bacillus_phage	22.4	1.8e-12
>prophage 19
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	167097	168708	644077		Pike_perch_iridovirus(100.0%)	1	NA	NA
WP_130657592.1|167097_168708_-	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	62.5	3.6e-18
>prophage 20
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	171829	172597	644077		Diadromus_pulchellus_ascovirus(100.0%)	1	NA	NA
WP_130689041.1|171829_172597_+	3-hydroxyacyl-CoA dehydrogenase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	28.3	1.2e-06
>prophage 21
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	178503	179901	644077		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_130689045.1|178503_179901_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.1	4.7e-38
>prophage 22
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	186576	189574	644077		Escherichia_phage(33.33%)	3	NA	NA
WP_024322523.1|186576_187428_-	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.9	6.6e-19
WP_024322522.1|187592_188378_+	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	30.5	7.0e-15
WP_024322521.1|188425_189574_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G3M9Y6	Bacillus_virus	32.8	6.0e-23
>prophage 23
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	206676	211145	644077		Planktothrix_phage(33.33%)	4	NA	NA
WP_027688854.1|206676_207489_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	28.6	1.1e-15
WP_018483888.1|208180_208447_+	DUF2277 domain-containing protein	NA	NA	NA	NA	NA
WP_024322508.1|208984_210049_-	GDP-L-fucose synthase	NA	R9S8B8	Prochlorococcus_phage	56.6	9.2e-95
WP_130674279.1|210041_211145_-	GDP-mannose 4,6-dehydratase	NA	M1IBC3	Acanthocystis_turfacea_Chlorella_virus	63.4	9.2e-130
>prophage 24
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	223831	224878	644077		Tupanvirus(100.0%)	1	NA	NA
WP_024322496.1|223831_224878_+	SDR family oxidoreductase	NA	A0A2K9KZK0	Tupanvirus	47.8	5.0e-85
>prophage 25
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	229755	233750	644077		Bathycoccus_sp._RCC1105_virus(33.33%)	4	NA	NA
WP_024322492.1|229755_230859_+	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	E5ES42	Bathycoccus_sp._RCC1105_virus	32.8	1.4e-48
WP_130674282.1|230848_231568_+	acyltransferase	NA	NA	NA	NA	NA
WP_027688842.1|231564_232536_+	NAD-dependent epimerase/dehydratase family protein	NA	A0A2H4UUK0	Bodo_saltans_virus	35.1	6.3e-42
WP_130663034.1|232532_233750_+	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L470	Tupanvirus	32.5	2.8e-39
>prophage 26
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	253040	255185	644077		Bacillus_phage(100.0%)	1	NA	NA
WP_024323477.1|253040_255185_+	peptidase domain-containing ABC transporter	NA	W8CYL7	Bacillus_phage	29.2	1.7e-39
>prophage 27
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	268817	269276	644077		Sinorhizobium_phage(100.0%)	1	NA	NA
WP_024323465.1|268817_269276_-	helix-turn-helix transcriptional regulator	NA	Q8W6G2	Sinorhizobium_phage	49.6	4.6e-27
>prophage 28
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	272784	273870	644077		Planktothrix_phage(100.0%)	1	NA	NA
WP_130674295.1|272784_273870_+	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.5	5.1e-32
>prophage 29
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	289238	290069	644077		Bacillus_virus(100.0%)	1	NA	NA
WP_075223651.1|289238_290069_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	39.9	3.4e-28
>prophage 30
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	296485	297568	644077		Planktothrix_phage(100.0%)	1	NA	NA
WP_075223653.1|296485_297568_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	35.0	5.4e-26
>prophage 31
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	302692	306117	644077		Cedratvirus(50.0%)	2	NA	NA
WP_075223656.1|302692_304384_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	28.3	3.0e-07
WP_130666052.1|304380_306117_-	thiol reductant ABC exporter subunit CydD	NA	A0A076FI99	Aureococcus_anophage	26.5	7.4e-09
>prophage 32
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	314267	323365	644077		Planktothrix_phage(33.33%)	9	NA	NA
WP_075223663.1|314267_315323_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.0	1.3e-27
WP_166477455.1|315322_316102_+	glycerophosphodiester phosphodiesterase	NA	A0A173GBD0	Staphylococcus_phage	35.2	3.7e-08
WP_130666047.1|316085_317090_+	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	28.0	3.5e-19
WP_130666046.1|317089_317899_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_130689055.1|317973_319629_-	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	34.8	3.7e-18
WP_130689056.1|319758_320631_-	glycerophosphodiester phosphodiesterase	NA	NA	NA	NA	NA
WP_018069338.1|320694_321789_-	alanine--glyoxylate aminotransferase family protein	NA	NA	NA	NA	NA
WP_018069339.1|321800_322583_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	2.3e-18
WP_018069340.1|322579_323365_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.0	1.8e-15
>prophage 33
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	329417	330902	644077		Planktothrix_phage(100.0%)	1	NA	NA
WP_166477457.1|329417_330902_-	sugar ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.5	1.4e-11
>prophage 34
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	342964	347122	644077		Planktothrix_phage(66.67%)	4	NA	NA
WP_018069357.1|342964_344041_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.0	7.8e-25
WP_018069358.1|344289_345312_+	substrate-binding domain-containing protein	NA	C6ZCU4	Enterobacteria_phage	29.6	3.9e-26
WP_018069359.1|345350_346304_+	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_024320145.1|346300_347122_+	sugar ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.0	7.3e-15
>prophage 35
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	353567	358275	644077	transposase	Bodo_saltans_virus(33.33%)	4	NA	NA
WP_027689416.1|353567_354507_+|transposase	IS630 family transposase	transposase	A0A2H4UV16	Bodo_saltans_virus	20.6	6.0e-13
WP_018069369.1|354597_355071_-	purine-binding chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_130689171.1|355070_356861_-	PAS domain S-box protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	32.2	2.0e-09
WP_130689172.1|357192_358275_-	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	46.0	3.4e-20
>prophage 36
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	362831	366445	644077	transposase	Trichoplusia_ni_ascovirus(50.0%)	4	NA	NA
WP_130689174.1|362831_363617_+	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	26.9	2.4e-07
WP_130674346.1|363644_364343_+	ribonuclease activity regulator RraA	NA	NA	NA	NA	NA
WP_130689175.1|364615_365530_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_166477458.1|365501_366445_-|transposase	IS630 family transposase	transposase	A0A2H4UV16	Bodo_saltans_virus	20.9	2.7e-13
>prophage 37
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	371613	373146	644077		Staphylococcus_phage(100.0%)	1	NA	NA
WP_130689179.1|371613_373146_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.7	2.5e-16
>prophage 38
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	378300	379215	644077		Hokovirus(100.0%)	1	NA	NA
WP_130689182.1|378300_379215_-	J domain-containing protein	NA	A0A1V0SF83	Hokovirus	23.8	1.0e-09
>prophage 39
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	384114	394195	644077		Bacillus_virus(25.0%)	10	NA	NA
WP_024320174.1|384114_385824_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	26.8	2.3e-10
WP_024320175.1|385820_386672_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_018069399.1|386668_387607_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_130662976.1|387658_388549_-	proline iminopeptidase-family hydrolase	NA	NA	NA	NA	NA
WP_024320177.1|388691_389489_+	LuxR family transcriptional regulator	NA	A0A1I9KF49	Aeromonas_phage	26.6	1.5e-09
WP_018069402.1|389553_390456_+	proline iminopeptidase-family hydrolase	NA	NA	NA	NA	NA
WP_027688756.1|390546_391404_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_042941104.1|391503_392400_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_027688754.1|392417_393329_-	acetamidase	NA	A0A1V0S8X7	Catovirus	25.6	6.9e-06
WP_130689186.1|393577_394195_-	porin family protein	NA	O11861	Bartonella_henselae_phage	35.7	5.1e-13
>prophage 40
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	401277	410327	644077		Organic_Lake_phycodnavirus(25.0%)	10	NA	NA
WP_027688748.1|401277_402072_+	sugar ABC transporter ATP-binding protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	30.8	5.4e-15
WP_027688747.1|402156_402960_+	TIM barrel protein	NA	NA	NA	NA	NA
WP_130689107.1|403002_403995_+	inositol 2-dehydrogenase	NA	NA	NA	NA	NA
WP_018070821.1|404119_404407_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_130689106.1|404697_405930_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	43.5	6.8e-25
WP_130674367.1|405940_406393_+	DUF421 domain-containing protein	NA	NA	NA	NA	NA
WP_003549481.1|406477_407242_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_130657722.1|407266_408331_-	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_025398453.1|408327_409320_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	30.3	1.7e-18
WP_018070816.1|409319_410327_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	24.3	1.9e-12
>prophage 41
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	422736	423525	644077		Planktothrix_phage(100.0%)	1	NA	NA
WP_130689103.1|422736_423525_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.4	2.4e-23
>prophage 42
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	427536	429087	644077		Amsacta_moorei_entomopoxvirus(100.0%)	1	NA	NA
WP_130689101.1|427536_429087_+	sugar ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	26.2	1.0e-09
>prophage 43
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	437726	443271	644077		Bacillus_virus(33.33%)	5	NA	NA
WP_024320211.1|437726_438806_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.4	1.3e-16
WP_024320212.1|438847_440359_-	glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_018070788.1|440479_441253_-	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	28.0	1.5e-17
WP_165419547.1|441350_442256_-	DMT family transporter	NA	NA	NA	NA	NA
WP_166477466.1|442341_443271_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	25.1	3.1e-14
>prophage 44
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	447099	448722	644077		Tupanvirus(100.0%)	1	NA	NA
WP_130689095.1|447099_448722_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	29.9	3.3e-59
>prophage 45
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	458583	460599	644077		Acanthamoeba_polyphaga_moumouvirus(100.0%)	1	NA	NA
WP_018070768.1|458583_460599_-	polysaccharide biosynthesis protein	NA	L7RD47	Acanthamoeba_polyphaga_moumouvirus	23.4	4.9e-12
>prophage 46
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	463917	470477	644077		Staphylococcus_phage(25.0%)	8	NA	NA
WP_018070764.1|463917_465435_-	sugar ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.5	2.1e-15
WP_018070763.1|465431_466430_-	LacI family transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	28.3	3.6e-24
WP_075223726.1|466628_467069_+	fucose dissimilation pathway protein FucU	NA	NA	NA	NA	NA
WP_075223727.1|467142_467436_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_075223728.1|467432_467768_-	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA	NA
WP_163856570.1|467840_468743_-	MBL fold metallo-hydrolase	NA	F2NZ47	Diadromus_pulchellus_ascovirus	24.4	3.4e-13
WP_130687235.1|468845_469478_-	DsbA family protein	NA	NA	NA	NA	NA
WP_075223731.1|469592_470477_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	25.7	7.6e-10
>prophage 47
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	475718	485163	644077		Staphylococcus_phage(25.0%)	9	NA	NA
WP_075223735.1|475718_477239_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.3e-21
WP_130662941.1|477238_478339_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_130662940.1|478335_479247_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_130689092.1|479345_479879_-	NUDIX hydrolase	NA	A0A1C3NEZ8	Phage_NCTB	32.3	9.5e-08
WP_130689091.1|479974_480619_+	DUF47 domain-containing protein	NA	NA	NA	NA	NA
WP_166477460.1|480618_481623_+	inorganic phosphate transporter	NA	M4QMY4	Ostreococcus_lucimarinus_virus	29.5	3.4e-06
WP_026238791.1|482090_483404_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_018070743.1|483460_484354_+	nitrate ABC transporter permease	NA	NA	NA	NA	NA
WP_017958153.1|484365_485163_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.7	2.3e-26
>prophage 48
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	492375	495783	644077		Anomala_cuprea_entomopoxvirus(50.0%)	4	NA	NA
WP_130689089.1|492375_493926_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	28.0	4.1e-11
WP_018070733.1|493925_494594_+	cysteine hydrolase	NA	NA	NA	NA	NA
WP_018070732.1|494586_494940_+	allophanate hydrolase	NA	NA	NA	NA	NA
WP_018486125.1|494991_495783_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.4	6.3e-32
>prophage 49
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	503218	507785	644077		Bacillus_virus(50.0%)	3	NA	NA
WP_130657776.1|503218_505609_-	EAL domain-containing protein	NA	G3MA91	Bacillus_virus	31.7	1.1e-18
WP_018070721.1|505714_506521_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_018070720.1|506594_507785_-	formaldehyde dehydrogenase, glutathione-independent	NA	A0A2K9L7I1	Tupanvirus	26.3	4.8e-07
>prophage 50
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	521375	523007	644077		Catovirus(100.0%)	1	NA	NA
WP_130689084.1|521375_523007_+	ABC transporter ATP-binding protein	NA	A0A1V0SBM3	Catovirus	25.9	6.3e-18
>prophage 51
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	526723	528871	644077		Salmonella_phage(100.0%)	1	NA	NA
WP_018070704.1|526723_528871_+	VWA domain-containing protein	NA	U5PV67	Salmonella_phage	28.2	1.5e-06
>prophage 52
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	532281	537182	644077		Paramecium_bursaria_Chlorella_virus(33.33%)	5	NA	NA
WP_018486096.1|532281_533223_-	2-hydroxyacid dehydrogenase	NA	M1H3H9	Paramecium_bursaria_Chlorella_virus	25.2	1.0e-12
WP_018496302.1|533358_534123_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	25.1	1.5e-09
WP_130689111.1|534136_534694_+	gluconokinase	NA	NA	NA	NA	NA
WP_027688677.1|534683_535577_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_130689082.1|535685_537182_+	sugar ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.0	1.4e-16
>prophage 53
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	541174	542799	644077		Bacillus_virus(100.0%)	2	NA	NA
WP_130689079.1|541174_542074_+	ABC transporter permease	NA	G3M9Y4	Bacillus_virus	24.8	4.5e-18
WP_130689078.1|542049_542799_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.7	3.4e-27
>prophage 54
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	552696	553476	644077		Planktothrix_phage(100.0%)	1	NA	NA
WP_020572104.1|552696_553476_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	37.2	2.7e-27
>prophage 55
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	559344	560115	644077		Bacillus_virus(100.0%)	1	NA	NA
WP_130657807.1|559344_560115_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.3	7.0e-28
>prophage 56
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	565879	567394	644077		Staphylococcus_phage(100.0%)	1	NA	NA
WP_130737396.1|565879_567394_+	sugar ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.4	6.7e-22
>prophage 57
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	574301	576137	644077		Ostreococcus_lucimarinus_virus(100.0%)	1	NA	NA
WP_130689121.1|574301_576137_-	3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing)	NA	A0A0P0CRC5	Ostreococcus_lucimarinus_virus	24.8	1.6e-22
>prophage 58
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	581479	582292	644077		Staphylococcus_phage(100.0%)	1	NA	NA
WP_024320314.1|581479_582292_-	sugar ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	24.4	3.7e-11
>prophage 59
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	587299	590323	644077		Planktothrix_phage(50.0%)	4	NA	NA
WP_027688639.1|587299_588064_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.2	1.9e-33
WP_003538412.1|588060_588819_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_130689124.1|588815_589523_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_166477462.1|589519_590323_-	SDR family oxidoreductase	NA	W8CYX9	Bacillus_phage	38.7	8.7e-05
>prophage 60
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	600824	601541	644077		Diadromus_pulchellus_ascovirus(100.0%)	1	NA	NA
WP_130674156.1|600824_601541_+	SDR family NAD(P)-dependent oxidoreductase	NA	F2NZ12	Diadromus_pulchellus_ascovirus	26.9	6.0e-05
>prophage 61
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	612352	613435	644077		Mycoplasma_phage(100.0%)	1	NA	NA
WP_130722795.1|612352_613435_+	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	53.9	5.4e-18
>prophage 62
NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	644077	631866	635519	644077		Trichoplusia_ni_ascovirus(33.33%)	4	NA	NA
WP_130689140.1|631866_632631_-	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	33.6	1.2e-19
WP_130689141.1|632686_633415_-	SDR family oxidoreductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	31.8	3.8e-07
WP_130722804.1|633441_634701_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_130689143.1|634697_635519_-	sugar ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.1	4.1e-18
>prophage 1
NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	709240	0	5826	709240	transposase	Rhizobium_phage(50.0%)	4	NA	NA
WP_018071585.1|1192_2188_+	plasmid partitioning protein RepB	NA	NA	NA	NA	NA
WP_166477441.1|2342_3557_+	replication initiation protein RepC	NA	L7TKN6	Rhizobium_phage	26.9	3.0e-17
WP_166477442.1|3737_4871_+	DUF1612 and helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_027689416.1|4883_5826_-|transposase	IS630 family transposase	transposase	A0A2H4UV16	Bodo_saltans_virus	20.6	6.0e-13
>prophage 2
NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	709240	9078	11604	709240		Streptococcus_phage(100.0%)	1	NA	NA
WP_130688914.1|9078_11604_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	36.4	7.1e-85
>prophage 3
NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	709240	28685	29498	709240		Bacillus_virus(100.0%)	1	NA	NA
WP_017991931.1|28685_29498_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.8	7.7e-33
>prophage 4
NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	709240	33678	34602	709240		Burkholderia_virus(100.0%)	1	NA	NA
WP_024321697.1|33678_34602_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	31.7	1.1e-06
>prophage 5
NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	709240	45537	53979	709240		Indivirus(33.33%)	5	NA	NA
WP_024321690.1|45537_47436_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	28.4	3.4e-23
WP_130688972.1|47531_49340_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.6	4.6e-46
WP_130688925.1|49605_50223_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_130688926.1|50575_51982_+	hypothetical protein	NA	NA	NA	NA	NA
WP_130688927.1|52050_53979_+	PAS domain-containing hybrid sensor histidine kinase/response regulator	NA	A0A1V0SGX0	Hokovirus	21.9	1.0e-06
>prophage 6
NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	709240	62226	64941	709240		Klosneuvirus(100.0%)	1	NA	NA
WP_018071539.1|62226_64941_-	ATP-binding cassette domain-containing protein	NA	A0A1V0SJ29	Klosneuvirus	24.2	6.0e-05
>prophage 7
NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	709240	72908	78143	709240		Planktothrix_phage(50.0%)	3	NA	NA
WP_075224641.1|72908_74798_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.2e-20
WP_024321672.1|74953_76297_-	adenylate/guanylate cyclase domain-containing protein	NA	NA	NA	NA	NA
WP_024321671.1|76805_78143_+	nucleotide sugar dehydrogenase	NA	M1HZW8	Acanthocystis_turfacea_Chlorella_virus	30.5	1.1e-36
>prophage 8
NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	709240	82532	88614	709240		Planktothrix_phage(33.33%)	5	NA	NA
WP_130688937.1|82532_83315_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	6.7e-34
WP_130688938.1|83334_84315_+	agmatinase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	24.5	4.3e-06
WP_130688939.1|84865_86020_-	DUF3095 domain-containing protein	NA	NA	NA	NA	NA
WP_024321663.1|86245_86725_+	hypothetical protein	NA	NA	NA	NA	NA
WP_130688940.1|86823_88614_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.8	3.6e-35
>prophage 9
NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	709240	104303	105243	709240	transposase	Bodo_saltans_virus(100.0%)	1	NA	NA
WP_027689416.1|104303_105243_+|transposase	IS630 family transposase	transposase	A0A2H4UV16	Bodo_saltans_virus	20.6	6.0e-13
>prophage 10
NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	709240	114558	118009	709240		Planktothrix_phage(50.0%)	4	NA	NA
WP_020397503.1|114558_115287_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.6	1.8e-33
WP_130688955.1|115331_116399_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_027690011.1|116403_117234_+	shikimate dehydrogenase	NA	NA	NA	NA	NA
WP_017991872.1|117241_118009_-	glucose 1-dehydrogenase	NA	Q06VL0	Trichoplusia_ni_ascovirus	34.0	9.8e-22
>prophage 11
NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	709240	127892	128348	709240		Burkholderia_phage(100.0%)	1	NA	NA
WP_130689148.1|127892_128348_-	DNA mismatch endonuclease Vsr	NA	E5E3X5	Burkholderia_phage	55.1	8.1e-32
>prophage 12
NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	709240	137434	138760	709240		Acidithiobacillus_phage(100.0%)	1	NA	NA
WP_130689152.1|137434_138760_-	DNA cytosine methyltransferase	NA	K4HZD0	Acidithiobacillus_phage	38.4	2.7e-67
>prophage 13
NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	709240	160975	164602	709240		Burkholderia_virus(50.0%)	4	NA	NA
WP_130689160.1|160975_161866_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	30.9	1.8e-06
WP_130689161.1|162601_162865_-	hypothetical protein	NA	NA	NA	NA	NA
WP_130689162.1|162869_163682_-	Ku protein	NA	NA	NA	NA	NA
WP_130665795.1|163693_164602_-	Ku protein	NA	A0A068LLA2	Mycobacterium_phage	26.4	8.3e-12
>prophage 14
NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	709240	171336	173124	709240		Lake_Baikal_phage(100.0%)	1	NA	NA
WP_130689167.1|171336_173124_+	HAMP domain-containing protein	NA	A0A2H4N7Z5	Lake_Baikal_phage	32.0	7.6e-17
>prophage 15
NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	709240	180973	181429	709240		Pseudomonas_phage(100.0%)	1	NA	NA
WP_024323544.1|180973_181429_+	NUDIX hydrolase	NA	S5VVF8	Pseudomonas_phage	34.5	2.3e-10
>prophage 16
NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	709240	190627	194623	709240		Enterococcus_phage(33.33%)	4	NA	NA
WP_130665782.1|190627_191563_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	36.1	1.4e-30
WP_130665781.1|191570_192422_-	formyltetrahydrofolate deformylase	NA	M4QRX9	Synechococcus_phage	34.9	2.1e-12
WP_130665780.1|192544_193150_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_130689237.1|193534_194623_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.7	3.3e-23
>prophage 17
NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	709240	204678	210658	709240	transposase	Mycobacterium_phage(33.33%)	5	NA	NA
WP_130688752.1|204678_206010_+	aspartate aminotransferase family protein	NA	A0A2D1G879	Mycobacterium_phage	30.0	4.1e-07
WP_130688753.1|206006_207302_+	DUF3422 family protein	NA	NA	NA	NA	NA
WP_027689416.1|207483_208426_-|transposase	IS630 family transposase	transposase	A0A2H4UV16	Bodo_saltans_virus	20.6	6.0e-13
WP_130689251.1|208531_208978_+	hypothetical protein	NA	NA	NA	NA	NA
WP_166477427.1|209469_210658_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	44.4	2.2e-52
>prophage 18
NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	709240	238120	239464	709240		Streptococcus_phage(100.0%)	1	NA	NA
WP_130655367.1|238120_239464_-	chloride channel protein	NA	A0A1X9I5Z9	Streptococcus_phage	27.1	1.2e-06
>prophage 19
NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	709240	245925	247306	709240		Sinorhizobium_phage(50.0%)	2	NA	NA
WP_075225166.1|245925_246126_-	hypothetical protein	NA	A0A291AUQ4	Sinorhizobium_phage	56.6	2.7e-08
WP_130655373.1|246259_247306_+	ATP-dependent DNA ligase	NA	A0A068CDF3	Rhizobium_phage	75.4	1.5e-150
>prophage 20
NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	709240	251369	251999	709240		Yellowstone_lake_phycodnavirus(100.0%)	1	NA	NA
WP_075225172.1|251369_251999_-	DnaJ domain-containing protein	NA	A0A0P0YNN4	Yellowstone_lake_phycodnavirus	48.3	1.9e-10
>prophage 21
NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	709240	255295	256831	709240		Catovirus(100.0%)	1	NA	NA
WP_130688769.1|255295_256831_-	histidine ammonia-lyase	NA	A0A1V0S940	Catovirus	36.3	4.0e-75
>prophage 22
NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	709240	268645	270912	709240		Planktothrix_phage(50.0%)	2	NA	NA
WP_018482978.1|268645_269422_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	35.3	9.9e-30
WP_130688776.1|269418_270912_+	histidine ammonia-lyase	NA	A0A1V0S940	Catovirus	33.1	2.5e-45
>prophage 23
NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	709240	277053	280911	709240		Tetraselmis_virus(50.0%)	2	NA	NA
WP_024319896.1|277053_278724_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	30.0	1.1e-44
WP_130688780.1|279024_280911_+	sensor histidine kinase	NA	Q8QNA2	Ectocarpus_siliculosus_virus	30.8	2.4e-05
>prophage 24
NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	709240	301484	302918	709240		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_130688790.1|301484_302918_+	DUF1254 domain-containing protein	NA	M1IA53	Paramecium_bursaria_Chlorella_virus	49.2	5.9e-121
>prophage 25
NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	709240	305968	306811	709240		Bordetella_phage(100.0%)	1	NA	NA
WP_080634369.1|305968_306811_-	AraC family transcriptional regulator	NA	A0A291LAM3	Bordetella_phage	35.5	3.0e-08
>prophage 26
NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	709240	313003	314671	709240		Planktothrix_phage(100.0%)	1	NA	NA
WP_130655402.1|313003_314671_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.2	4.6e-16
>prophage 27
NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	709240	337514	338600	709240		Bacillus_virus(100.0%)	1	NA	NA
WP_018069916.1|337514_338600_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	29.3	1.3e-24
>prophage 28
NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	709240	344679	345516	709240		Mycobacterium_phage(100.0%)	1	NA	NA
WP_018069923.1|344679_345516_-	alpha/beta hydrolase	NA	A0A249XU20	Mycobacterium_phage	24.8	1.8e-08
>prophage 29
NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	709240	355154	359918	709240		Bacillus_phage(33.33%)	6	NA	NA
WP_018069934.1|355154_356051_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	33.8	2.2e-12
WP_018069935.1|356126_356432_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024319943.1|356601_357372_-	glucose 1-dehydrogenase	NA	A0A0N9R355	Chrysochromulina_ericina_virus	24.6	8.6e-10
WP_024319944.1|357491_358118_-	hypothetical protein	NA	NA	NA	NA	NA
WP_166477445.1|358507_358831_-	hypothetical protein	NA	NA	NA	NA	NA
WP_130688802.1|358997_359918_+	DUF1738 domain-containing protein	NA	A0A1V0EEV1	Caulobacter_phage	46.9	1.8e-62
>prophage 30
NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	709240	364511	368660	709240		Bacillus_virus(33.33%)	3	NA	NA
WP_018071042.1|364511_366755_-	EAL domain-containing protein	NA	G3MA91	Bacillus_virus	31.0	1.7e-13
WP_018071043.1|366861_367674_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	8.0e-14
WP_130688804.1|367670_368660_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	22.1	2.6e-11
>prophage 31
NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	709240	384233	402058	709240		Diadromus_pulchellus_ascovirus(14.29%)	17	NA	NA
WP_020397468.1|384233_385028_+	SDR family oxidoreductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	27.1	2.3e-10
WP_130688806.1|385131_387288_+	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_130688807.1|387303_388311_+	DNA topoisomerase IB	NA	A0A0U2TSJ7	Niemeyer_virus	29.7	1.5e-30
WP_130688808.1|388307_389186_+	DNA polymerase domain-containing protein	NA	NA	NA	NA	NA
WP_075225848.1|389198_389924_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_018071062.1|389930_390221_-	DUF3175 domain-containing protein	NA	A0A0F6TH17	Sinorhizobium_phage	63.4	3.0e-24
WP_130688809.1|390271_390586_-	plasmid stabilization protein	NA	NA	NA	NA	NA
WP_075225850.1|390739_391117_+	hypothetical protein	NA	NA	NA	NA	NA
WP_130688810.1|391162_393880_-	response regulator	NA	B5LWN8	Feldmannia_species_virus	24.9	7.0e-06
WP_018071066.1|394051_394225_-	hypothetical protein	NA	NA	NA	NA	NA
WP_018071067.1|394234_394405_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024319964.1|394544_394799_-	DUF2934 domain-containing protein	NA	NA	NA	NA	NA
WP_130688811.1|394941_395583_-	UdgX family uracil-DNA binding protein	NA	A0A2I6PIA1	Pseudomonas_phage	32.7	2.4e-13
WP_130666363.1|395796_397260_+	phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase family protein	NA	NA	NA	NA	NA
WP_130683164.1|397353_398169_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_075225853.1|398379_399270_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	28.0	1.0e-14
WP_130688812.1|400234_402058_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	35.6	1.6e-14
>prophage 32
NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	709240	407377	413919	709240		Trichoplusia_ni_ascovirus(66.67%)	6	NA	NA
WP_075225863.1|407377_408175_+	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	33.6	1.3e-24
WP_075225864.1|408298_409183_+	sugar phosphate isomerase/epimerase	NA	NA	NA	NA	NA
WP_130688818.1|409197_410070_+	TIM barrel protein	NA	NA	NA	NA	NA
WP_130663463.1|410168_410891_+	glucose 1-dehydrogenase	NA	Q06VL0	Trichoplusia_ni_ascovirus	34.4	3.0e-20
WP_075225868.1|411349_412360_+	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_130663464.1|412389_413919_+	sugar ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	26.3	1.0e-09
>prophage 33
NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	709240	423100	423769	709240		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_130688821.1|423100_423769_+	GrpB family protein	NA	A0A2K5B2B6	Erysipelothrix_phage	32.9	6.1e-12
>prophage 34
NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	709240	430440	431613	709240		Pandoravirus(100.0%)	1	NA	NA
WP_018071089.1|430440_431613_+	hypothetical protein	NA	A0A0B5JD48	Pandoravirus	31.4	1.8e-14
>prophage 35
NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	709240	434782	440293	709240		Planktothrix_phage(66.67%)	5	NA	NA
WP_075225506.1|434782_435841_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	34.5	2.9e-24
WP_130683190.1|435913_436666_+	metallophosphatase	NA	NA	NA	NA	NA
WP_130688826.1|436770_438003_+	peptidase T	NA	NA	NA	NA	NA
WP_018071096.1|438149_438986_-	cell wall hydrolase	NA	A0A142EZU6	Stenotrophomonas_phage	31.7	1.1e-07
WP_024319985.1|439252_440293_-	sulfate/molybdate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.4	7.0e-31
>prophage 36
NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	709240	445019	456910	709240		Bacillus_phage(20.0%)	10	NA	NA
WP_130688827.1|445019_445712_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	31.1	1.5e-21
WP_130688828.1|445708_448417_-	sensor histidine kinase KdpD	NA	Q8QNA2	Ectocarpus_siliculosus_virus	36.5	1.3e-12
WP_130688829.1|448498_449068_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_018483394.1|449143_451204_-	potassium-transporting ATPase subunit KdpB	NA	E4ZFI9	Streptococcus_phage	27.9	8.4e-36
WP_018071107.1|451248_451404_-	hypothetical protein	NA	NA	NA	NA	NA
WP_027690228.1|451413_453117_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_003547774.1|453186_453276_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_130688830.1|453766_454810_+	NAD(P)-dependent alcohol dehydrogenase	NA	E3SJ82	Synechococcus_phage	23.5	1.7e-08
WP_027690227.1|454935_455505_-	DedA family protein	NA	NA	NA	NA	NA
WP_130688831.1|455548_456910_-	FAD-containing oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	35.0	3.7e-64
>prophage 37
NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	709240	474039	480026	709240	holin	Bacillus_virus(25.0%)	6	NA	NA
WP_130688841.1|474039_474822_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.8e-15
WP_130688842.1|474821_475523_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.5	2.4e-14
WP_018071130.1|475527_476415_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_024320006.1|476416_477406_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_018071132.1|477539_479135_+|holin	choline dehydrogenase	holin	A0A1V0S9J5	Catovirus	30.8	2.8e-55
WP_130688843.1|479144_480026_+	3-hydroxyisobutyrate dehydrogenase	NA	A0A077SLF7	Escherichia_phage	29.9	7.1e-24
>prophage 38
NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	709240	484620	488086	709240		Amsacta_moorei_entomopoxvirus(50.0%)	3	NA	NA
WP_130688848.1|484620_486156_-	sugar ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	25.8	1.7e-12
WP_024320014.1|486229_487225_-	rhamnose ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_018071139.1|487273_488086_-	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	28.4	3.1e-18
>prophage 39
NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	709240	496182	497040	709240		Trichoplusia_ni_ascovirus(100.0%)	1	NA	NA
WP_026170824.1|496182_497040_+	SDR family oxidoreductase	NA	A0A2N9QUX2	Trichoplusia_ni_ascovirus	46.6	5.4e-61
>prophage 40
NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	709240	501992	503507	709240	holin	Catovirus(100.0%)	1	NA	NA
WP_130688853.1|501992_503507_-|holin	choline-sulfatase	holin	A0A1V0SA98	Catovirus	26.3	1.3e-22
>prophage 41
NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	709240	506521	508221	709240		Planktothrix_phage(50.0%)	2	NA	NA
WP_130688856.1|506521_507421_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.4	2.2e-17
WP_130688857.1|507417_508221_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	26.7	2.8e-11
>prophage 42
NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	709240	517711	520341	709240		Planktothrix_phage(50.0%)	2	NA	NA
WP_130688859.1|517711_519400_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	27.6	4.7e-16
WP_130688860.1|519396_520341_-	acetamidase/formamidase family protein	NA	A0A1V0S8X7	Catovirus	29.3	3.0e-28
>prophage 43
NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	709240	531851	533687	709240		Planktothrix_phage(100.0%)	1	NA	NA
WP_130688863.1|531851_533687_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.6	9.2e-18
>prophage 44
NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	709240	537249	537564	709240		Pseudomonas_phage(100.0%)	1	NA	NA
WP_130688865.1|537249_537564_-	XRE family transcriptional regulator	NA	A0A2D1GR59	Pseudomonas_phage	35.7	7.6e-05
>prophage 45
NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	709240	550931	552560	709240		Planktothrix_phage(100.0%)	1	NA	NA
WP_024320067.1|550931_552560_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.6	3.7e-26
>prophage 46
NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	709240	563503	564637	709240		Planktothrix_phage(100.0%)	1	NA	NA
WP_024320076.1|563503_564637_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	34.5	7.7e-23
>prophage 47
NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	709240	577898	585570	709240		Bordetella_phage(25.0%)	8	NA	NA
WP_130688052.1|577898_578639_+	helix-turn-helix transcriptional regulator	NA	A0A291LAM3	Bordetella_phage	46.1	9.5e-14
WP_130687757.1|578751_579753_-	NADP-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_130657296.1|579802_580618_-	oxidoreductase	NA	NA	NA	NA	NA
WP_130687755.1|580708_581185_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_130687753.1|581272_583294_-	beta-N-acetylhexosaminidase	NA	A0A2H4UUW7	Bodo_saltans_virus	25.9	1.8e-06
WP_130657293.1|583349_583820_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_130657292.1|583831_584758_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.3	1.4e-19
WP_130687751.1|584754_585570_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	25.6	6.8e-13
>prophage 48
NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	709240	600916	605750	709240		Agrobacterium_phage(50.0%)	5	NA	NA
WP_130687735.1|600916_601897_-	3'-5' exonuclease	NA	A0A223W0B0	Agrobacterium_phage	36.9	1.9e-30
WP_130687733.1|601989_603369_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_018495109.1|603365_604040_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_018071246.1|604163_604763_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_018071247.1|604859_605750_-	haloalkane dehalogenase	NA	B9U1C3	Vaccinia_virus	34.6	4.4e-42
>prophage 49
NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	709240	613651	613861	709240		uncultured_virus(100.0%)	1	NA	NA
WP_003548109.1|613651_613861_+	cold-shock protein	NA	A0A218MMZ6	uncultured_virus	54.7	8.9e-10
>prophage 50
NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	709240	623145	624030	709240		Synechococcus_phage(100.0%)	1	NA	NA
WP_003548134.1|623145_624030_-	formyltetrahydrofolate deformylase	NA	M4QRX9	Synechococcus_phage	40.4	6.9e-11
>prophage 51
NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	709240	627580	628489	709240		Organic_Lake_phycodnavirus(100.0%)	1	NA	NA
WP_024321767.1|627580_628489_-	glutamine amidotransferase family protein	NA	F2Y1G4	Organic_Lake_phycodnavirus	29.2	1.1e-06
>prophage 52
NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	709240	659817	663547	709240	protease	Yaba_monkey_tumor_virus(50.0%)	2	NA	NA
WP_130688891.1|659817_661002_-	serpin family protein	NA	Q6TUM5	Yaba_monkey_tumor_virus	25.5	1.1e-11
WP_130688892.1|661015_663547_-|protease	trypsin-like serine protease	protease	Q6JKF3	Neodiprion_sertifer_nucleopolyhedrovirus	33.9	2.6e-26
>prophage 53
NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	709240	679194	679599	709240		Sinorhizobium_phage(100.0%)	1	NA	NA
WP_018071616.1|679194_679599_+	helix-turn-helix transcriptional regulator	NA	Q8W6G2	Sinorhizobium_phage	45.4	1.3e-17
>prophage 54
NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	709240	689046	689820	709240		Bacillus_virus(100.0%)	1	NA	NA
WP_128403610.1|689046_689820_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.3	8.6e-34
