assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_011604485.1_ASM1160448v1	NZ_CP050097	Rhizobium leguminosarum bv. trifolii strain 9B chromosome, complete genome	1	2181160-2181252	1	CRISPRCasFinder	no		csa3,DEDDh,cas3,WYL	Orphan	GACCGGGTCAACCGTAAACGGTGACTGG	28	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,WYL	NA|79aa|up_6|NZ_CP050097.1_2175549_2175786_+,NA|71aa|up_0|NZ_CP050097.1_2180894_2181107_-,NA	NA|536aa|up_9|NZ_CP050097.1_2171266_2172874_-	PRK15389, PRK15389, fumarate hydratase; Provisional	NA|278aa|up_8|NZ_CP050097.1_2173105_2173939_+	TIGR01965, VCBS_repeat, VCBS repeat	NA|464aa|up_7|NZ_CP050097.1_2174066_2175458_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|79aa|up_6|NZ_CP050097.1_2175549_2175786_+	NA	NA|638aa|up_5|NZ_CP050097.1_2175880_2177794_+	COG2989, COG2989, Uncharacterized protein conserved in bacteria [Function unknown]	NA|237aa|up_4|NZ_CP050097.1_2178104_2178815_-	PRK13222, PRK13222, N-acetylmuramic acid 6-phosphate phosphatase MupP	NA|233aa|up_3|NZ_CP050097.1_2179065_2179764_+	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	NA|188aa|up_2|NZ_CP050097.1_2179779_2180343_+	COG3184, COG3184, Uncharacterized protein conserved in bacteria [Function unknown]	NA|95aa|up_1|NZ_CP050097.1_2180440_2180725_+	PRK14425, PRK14425, acylphosphatase; Provisional	NA|71aa|up_0|NZ_CP050097.1_2180894_2181107_-	NA	NA|462aa|down_0|NZ_CP050097.1_2181377_2182763_+	PRK06116, PRK06116, glutathione reductase; Validated	NA|377aa|down_1|NZ_CP050097.1_2182921_2184052_+	pfam05598, DUF772, Transposase domain (DUF772)	NA|430aa|down_2|NZ_CP050097.1_2184267_2185557_-	COG4961, TadG, Flp pilus assembly protein TadG [Intracellular trafficking and secretion]	NA|458aa|down_3|NZ_CP050097.1_2185776_2187150_+	pfam01474, DAHP_synth_2, Class-II DAHP synthetase family	NA|613aa|down_4|NZ_CP050097.1_2187486_2189325_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|579aa|down_5|NZ_CP050097.1_2189529_2191266_-	COG4655, COG4655, Predicted membrane protein [Function unknown]	NA|141aa|down_6|NZ_CP050097.1_2191267_2191690_-	COG4961, TadG, Flp pilus assembly protein TadG [Intracellular trafficking and secretion]	NA|133aa|down_7|NZ_CP050097.1_2192056_2192455_+	COG3791, COG3791, Uncharacterized conserved protein [Function unknown]	NA|177aa|down_8|NZ_CP050097.1_2192451_2192982_-	COG4420, COG4420, Predicted membrane protein [Function unknown]	NA|560aa|down_9|NZ_CP050097.1_2193176_2194856_+	PRK13981, PRK13981, NAD synthetase; Provisional
GCF_011604485.1_ASM1160448v1	NZ_CP050097	Rhizobium leguminosarum bv. trifolii strain 9B chromosome, complete genome	2	2475109-2475199	2	CRISPRCasFinder	no		csa3,DEDDh,cas3,WYL	Orphan	GGCATCGCTATTGGCGAGCCCGGCATCG	28	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,WYL	NA,NA|132aa|down_1|NZ_CP050097.1_2477400_2477796_-,NA|101aa|down_2|NZ_CP050097.1_2477942_2478245_+,NA|63aa|down_3|NZ_CP050097.1_2478389_2478578_+	NA|503aa|up_9|NZ_CP050097.1_2461877_2463386_-	COG5616, COG5616, Predicted integral membrane protein [Function unknown]	NA|304aa|up_8|NZ_CP050097.1_2464253_2465165_-	cd11589, Agmatinase_like_1, Agmatinase and related proteins	NA|389aa|up_7|NZ_CP050097.1_2465380_2466547_+	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily	NA|163aa|up_6|NZ_CP050097.1_2466661_2467150_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|227aa|up_5|NZ_CP050097.1_2467149_2467830_+	COG3393, COG3393, Predicted acetyltransferase [General function prediction only]	NA|949aa|up_4|NZ_CP050097.1_2467844_2470691_-	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|327aa|up_3|NZ_CP050097.1_2470991_2471972_+	cd06282, PBP1_LacI-like, ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors	NA|422aa|up_2|NZ_CP050097.1_2472043_2473309_-	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|279aa|up_1|NZ_CP050097.1_2473335_2474172_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|308aa|up_0|NZ_CP050097.1_2474168_2475092_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|277aa|down_0|NZ_CP050097.1_2476370_2477201_-	COG1409, Icc, Predicted phosphohydrolases [General function prediction only]	NA|132aa|down_1|NZ_CP050097.1_2477400_2477796_-	NA	NA|101aa|down_2|NZ_CP050097.1_2477942_2478245_+	NA	NA|63aa|down_3|NZ_CP050097.1_2478389_2478578_+	NA	NA|791aa|down_4|NZ_CP050097.1_2478592_2480965_-	cd11325, AmyAc_GTHase, Alpha amylase catalytic domain found in Glycosyltrehalose trehalohydrolase (also called Maltooligosyl trehalose Trehalohydrolase)	NA|622aa|down_5|NZ_CP050097.1_2481226_2483092_+	COG2931, COG2931, RTX toxins and related Ca2+-binding proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|102aa|down_6|NZ_CP050097.1_2483187_2483493_+	PRK05778, PRK05778, 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated	NA|169aa|down_7|NZ_CP050097.1_2483531_2484038_+	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|422aa|down_8|NZ_CP050097.1_2484051_2485317_+	PRK06333, PRK06333, beta-ketoacyl-ACP synthase	NA|143aa|down_9|NZ_CP050097.1_2485398_2485827_+	pfam16156, DUF4864, Domain of unknown function (DUF4864)
GCF_011604485.1_ASM1160448v1	NZ_CP050097	Rhizobium leguminosarum bv. trifolii strain 9B chromosome, complete genome	3	2745198-2745306	3	CRISPRCasFinder	no		csa3,DEDDh,cas3,WYL	Orphan	GCAGCCTTCTTCTTCGGTGCGGCTTCTT	28	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,WYL	NA|111aa|up_9|NZ_CP050097.1_2735420_2735753_-,NA|58aa|up_8|NZ_CP050097.1_2735749_2735923_-,NA|156aa|down_5|NZ_CP050097.1_2751880_2752348_-	NA|111aa|up_9|NZ_CP050097.1_2735420_2735753_-	NA	NA|58aa|up_8|NZ_CP050097.1_2735749_2735923_-	NA	NA|220aa|up_7|NZ_CP050097.1_2736052_2736712_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|279aa|up_6|NZ_CP050097.1_2736960_2737797_+	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|276aa|up_5|NZ_CP050097.1_2737804_2738632_+	PRK00024, PRK00024, DNA repair protein RadC	NA|396aa|up_4|NZ_CP050097.1_2738816_2740004_+	pfam01070, FMN_dh, FMN-dependent dehydrogenase	NA|469aa|up_3|NZ_CP050097.1_2740222_2741629_+	PRK05249, PRK05249, Si-specific NAD(P)(+) transhydrogenase	NA|268aa|up_2|NZ_CP050097.1_2741692_2742496_+	cd09083, EEP-1, Exonuclease-Endonuclease-Phosphatase domain; uncharacterized family 1	NA|591aa|up_1|NZ_CP050097.1_2742656_2744429_+	smart00729, Elp3, Elongator protein 3, MiaB family, Radical SAM	NA|140aa|up_0|NZ_CP050097.1_2744580_2745000_-	COG3631, COG3631, Ketosteroid isomerase-related protein [General function prediction only]	NA|197aa|down_0|NZ_CP050097.1_2747101_2747692_-	pfam14345, GDYXXLXY, GDYXXLXY protein	NA|368aa|down_1|NZ_CP050097.1_2747688_2748792_-	COG4872, COG4872, Predicted membrane protein [Function unknown]	NA|49aa|down_2|NZ_CP050097.1_2749663_2749810_+	COG5457, COG5457, Uncharacterized conserved small protein [Function unknown]	NA|48aa|down_3|NZ_CP050097.1_2750104_2750248_+	COG5457, COG5457, Uncharacterized conserved small protein [Function unknown]	NA|478aa|down_4|NZ_CP050097.1_2750341_2751775_+	PRK05335, PRK05335, tRNA (uracil-5-)-methyltransferase Gid; Reviewed	NA|156aa|down_5|NZ_CP050097.1_2751880_2752348_-	NA	NA|286aa|down_6|NZ_CP050097.1_2752419_2753277_-	COG1562, ERG9, Phytoene/squalene synthetase [Lipid metabolism]	NA|129aa|down_7|NZ_CP050097.1_2753279_2753666_-	COG3737, COG3737, Uncharacterized conserved protein [Function unknown]	NA|847aa|down_8|NZ_CP050097.1_2753670_2756211_-	PRK14726, PRK14726, protein translocase subunit SecDF	NA|116aa|down_9|NZ_CP050097.1_2756256_2756604_-	COG1862, YajC, Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
GCF_011604485.1_ASM1160448v1	NZ_CP050097	Rhizobium leguminosarum bv. trifolii strain 9B chromosome, complete genome	4	3878768-3878850	4	CRISPRCasFinder	no		csa3,DEDDh,cas3,WYL	Orphan	ATGCATGCCTTTATCCCGGAACCGCT	26	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,WYL	NA|79aa|up_0|NZ_CP050097.1_3878466_3878703_+,NA	NA|230aa|up_9|NZ_CP050097.1_3870354_3871044_+	PRK00015, rnhB, ribonuclease HII; Validated	NA|164aa|up_8|NZ_CP050097.1_3871112_3871604_-	PRK09173, PRK09173, F0F1 ATP synthase subunit B; Validated	NA|208aa|up_7|NZ_CP050097.1_3871607_3872231_-	PRK09174, PRK09174, F0F1 ATP synthase subunit B	NA|76aa|up_6|NZ_CP050097.1_3872308_3872536_-	PRK07558, PRK07558, F0F1 ATP synthase subunit C; Validated	NA|251aa|up_5|NZ_CP050097.1_3872603_3873356_-	COG0356, AtpB, F0F1-type ATP synthase, subunit a [Energy production and conversion]	NA|113aa|up_4|NZ_CP050097.1_3873418_3873757_-	COG5336, COG5336, Uncharacterized protein conserved in bacteria [Function unknown]	NA|410aa|up_3|NZ_CP050097.1_3874028_3875258_-	COG3773, SleB, Cell wall hydrolyses involved in spore germination [Cell envelope biogenesis, outer membrane]	NA|633aa|up_2|NZ_CP050097.1_3875532_3877431_-	COG3158, Kup, K+ transporter [Inorganic ion transport and metabolism]	NA|326aa|up_1|NZ_CP050097.1_3877449_3878427_-	cd12837, EcCorA-like_u1, uncharacterized subgroup of the Escherichia coli Mg2+ transporter CorA_like subfamily	NA|79aa|up_0|NZ_CP050097.1_3878466_3878703_+	NA	NA|389aa|down_0|NZ_CP050097.1_3878872_3880039_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|245aa|down_1|NZ_CP050097.1_3880676_3881411_-	COG2771, CsgD, DNA-binding HTH domain-containing proteins [Transcription]	NA|266aa|down_2|NZ_CP050097.1_3881665_3882463_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|255aa|down_3|NZ_CP050097.1_3882574_3883339_+	cd05233, SDR_c, classical (c) SDRs	NA|306aa|down_4|NZ_CP050097.1_3883338_3884256_+	pfam05035, DGOK, 2-keto-3-deoxy-galactonokinase	NA|214aa|down_5|NZ_CP050097.1_3884269_3884911_+	PRK09140, PRK09140, 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed	NA|296aa|down_6|NZ_CP050097.1_3884907_3885795_+	COG3386, COG3386, Gluconolactonase [Carbohydrate transport and metabolism]	NA|202aa|down_7|NZ_CP050097.1_3886025_3886631_+	pfam05239, PRC, PRC-barrel domain	NA|455aa|down_8|NZ_CP050097.1_3886684_3888049_-	COG5001, COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Signal transduction mechanisms]	NA|574aa|down_9|NZ_CP050097.1_3888202_3889924_-	cd17546, REC_hyHK_CKI1_RcsC-like, phosphoacceptor receiver (REC) domain of hybrid sensor histidine kinases/response regulators similar to Arabidopsis thaliana CKI1 and Escherichia coli RcsC
