The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP050108	Rhizobium leguminosarum bv. trifolii strain 3B chromosome, complete genome	4795548	976427	986691	4795548		uncultured_Mediterranean_phage(83.33%)	9	NA	NA
WP_003559389.1|976427_976937_-	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	59.4	4.2e-45
WP_130652385.1|976966_977539_-	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	51.5	1.4e-41
WP_130652384.1|977597_978092_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	35.9	6.7e-24
WP_047621835.1|978228_978504_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003539654.1|978646_978802_+	hypothetical protein	NA	NA	NA	NA	NA
WP_130652383.1|979151_981992_-	DNA gyrase subunit A	NA	A0A1B1IVS2	uncultured_Mediterranean_phage	42.2	4.4e-75
WP_018242015.1|982228_982876_+	MarC family protein	NA	NA	NA	NA	NA
WP_130652382.1|982976_983486_-	single-stranded DNA-binding protein	NA	R9TP78	Rhizobium_phage	56.2	9.3e-45
WP_018242012.1|983769_986691_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	62.1	0.0e+00
>prophage 2
NZ_CP050108	Rhizobium leguminosarum bv. trifolii strain 3B chromosome, complete genome	4795548	1233796	1247184	4795548	tRNA	uncultured_Mediterranean_phage(90.91%)	13	NA	NA
WP_130652280.1|1233796_1236337_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	48.2	8.2e-57
WP_003558894.1|1236382_1236730_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	39.1	2.4e-12
WP_130652279.1|1236936_1237809_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_130652278.1|1237957_1239562_-	peptidoglycan DD-metalloendopeptidase family protein	NA	I3PV24	Clostridium_phage	29.2	5.1e-12
WP_018241800.1|1239807_1240461_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.1	1.5e-15
WP_018241799.1|1240457_1241231_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	30.2	2.4e-23
WP_130652277.1|1241235_1242519_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	45.3	1.4e-97
WP_018241797.1|1242719_1243547_-	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	46.5	5.2e-53
WP_130652276.1|1243543_1244155_-	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
WP_003538990.1|1244206_1244398_-	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	72.1	8.9e-09
WP_130652275.1|1244581_1245298_-	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	47.0	2.6e-40
WP_130652274.1|1245294_1246152_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	38.5	5.6e-34
WP_130652273.1|1246170_1247184_-	beta-N-acetylhexosaminidase	NA	A0A1B1IVS3	uncultured_Mediterranean_phage	42.6	2.1e-24
>prophage 3
NZ_CP050108	Rhizobium leguminosarum bv. trifolii strain 3B chromosome, complete genome	4795548	1505814	1516523	4795548	protease	Synechococcus_phage(16.67%)	7	NA	NA
WP_166465711.1|1505814_1508013_-	esterase-like activity of phytase family protein	NA	E3SJA5	Synechococcus_phage	40.7	2.7e-80
WP_166465712.1|1508108_1509008_-	DMT family transporter	NA	NA	NA	NA	NA
WP_003558438.1|1509380_1509656_-	HU family DNA-binding protein	NA	A0A172Q061	Acinetobacter_phage	34.1	7.1e-07
WP_017959927.1|1509862_1512280_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	49.4	2.5e-204
WP_017963839.1|1512682_1513960_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	58.4	1.7e-132
WP_003547334.1|1514263_1514893_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	59.2	9.4e-63
WP_032980139.1|1515269_1516523_+	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	34.1	1.0e-12
>prophage 4
NZ_CP050108	Rhizobium leguminosarum bv. trifolii strain 3B chromosome, complete genome	4795548	2425844	2431486	4795548		Enterobacteria_phage(33.33%)	6	NA	NA
WP_113542201.1|2425844_2426927_+	GDP-mannose 4,6-dehydratase	NA	M4QRT5	Synechococcus_phage	71.9	8.7e-141
WP_113542202.1|2426931_2427852_+	GDP-L-fucose synthase	NA	M1I5W5	Acanthocystis_turfacea_Chlorella_virus	56.4	4.8e-100
WP_113542203.1|2428095_2428662_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	41.0	4.8e-34
WP_113542204.1|2428675_2429731_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	51.5	3.4e-97
WP_113542205.1|2429732_2430626_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	38.9	5.8e-34
WP_113542206.1|2430622_2431486_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	K7QKA7	Escherichia_phage	60.0	3.7e-94
>prophage 5
NZ_CP050108	Rhizobium leguminosarum bv. trifolii strain 3B chromosome, complete genome	4795548	3835044	3844972	4795548		Mycobacterium_phage(25.0%)	9	NA	NA
WP_130759678.1|3835044_3837312_+	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	40.9	3.7e-125
WP_018243700.1|3837965_3838187_+	glutaredoxin-like protein NrdH	NA	V5UN81	Mycobacterium_phage	52.1	7.9e-17
WP_130759677.1|3838201_3838606_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A142F1R4	Bacillus_phage	43.1	1.1e-16
WP_130759676.1|3838584_3840789_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	51.4	4.3e-211
WP_047623038.1|3840876_3841851_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	R4TBI6	Mycobacterium_phage	75.1	2.8e-138
WP_047623012.1|3841955_3843176_+	adenylate/guanylate cyclase domain-containing protein	NA	M1HLN3	Pelagibacter_phage	29.7	5.4e-14
WP_130717984.1|3843180_3843909_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	37.6	4.4e-40
WP_018446446.1|3843905_3844262_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_047623009.1|3844261_3844972_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2P1JXV3	Rhodococcus_phage	48.2	5.1e-49
>prophage 6
NZ_CP050108	Rhizobium leguminosarum bv. trifolii strain 3B chromosome, complete genome	4795548	4713763	4727568	4795548		Vibrio_phage(25.0%)	10	NA	NA
WP_026230698.1|4713763_4714969_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	33.2	1.1e-40
WP_130652814.1|4715242_4715695_+	GatB/YqeY domain-containing protein	NA	A0A292GL36	Xanthomonas_phage	38.7	6.8e-15
WP_130652813.1|4715701_4716592_-	hypothetical protein	NA	NA	NA	NA	NA
WP_130652812.1|4717262_4719272_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.4e-88
WP_130652811.1|4719271_4721152_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	34.6	1.5e-71
WP_112904278.1|4721200_4721929_+	class I SAM-dependent methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	42.0	2.4e-49
WP_130652810.1|4722093_4723281_+	glycine C-acetyltransferase	NA	D2TEZ5	Emiliania_huxleyi_virus	28.3	4.4e-37
WP_130717301.1|4723543_4724581_+	L-threonine 3-dehydrogenase	NA	R9TPW0	Vibrio_phage	66.7	9.2e-15
WP_130652808.1|4724591_4724939_+	GFA family protein	NA	NA	NA	NA	NA
WP_018074040.1|4725510_4727568_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	33.6	1.7e-36
>prophage 1
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	0	2242	580410		Ochrobactrum_phage(100.0%)	1	NA	NA
WP_130654110.1|1201_2242_+	plasmid partitioning protein RepB	NA	A0A240F4U0	Ochrobactrum_phage	32.4	1.2e-35
>prophage 2
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	7270	14633	580410		Tupanvirus(50.0%)	5	NA	NA
WP_130654112.1|7270_8188_-	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	53.1	1.9e-32
WP_020572886.1|9195_10341_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_026231066.1|10696_11743_+	SDR family oxidoreductase	NA	A0A2K9KZK0	Tupanvirus	47.9	8.0e-83
WP_130654113.1|11742_12729_+	UDP-glucose 4-epimerase GalE	NA	A0A2K9L5H6	Tupanvirus	37.1	4.2e-49
WP_130654114.1|12725_14633_+	glycosyltransferase	NA	M1I7Q5	Paramecium_bursaria_Chlorella_virus	41.1	8.5e-75
>prophage 3
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	22471	23518	580410		Bacillus_virus(100.0%)	1	NA	NA
WP_130654117.1|22471_23518_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G3M9Y6	Bacillus_virus	32.7	2.6e-25
>prophage 4
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	27494	28475	580410		Mycobacterium_phage(100.0%)	1	NA	NA
WP_130729852.1|27494_28475_-	alpha/beta hydrolase	NA	A0A249XU20	Mycobacterium_phage	24.8	6.0e-08
>prophage 5
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	39416	40211	580410		Organic_Lake_phycodnavirus(100.0%)	1	NA	NA
WP_018247048.1|39416_40211_+	sugar ABC transporter ATP-binding protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	30.8	4.1e-15
>prophage 6
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	48268	48727	580410		Sinorhizobium_phage(100.0%)	1	NA	NA
WP_018247039.1|48268_48727_-	helix-turn-helix transcriptional regulator	NA	Q8W6G2	Sinorhizobium_phage	49.6	3.0e-26
>prophage 7
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	52237	53323	580410		Planktothrix_phage(100.0%)	1	NA	NA
WP_130654127.1|52237_53323_+	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.7	1.9e-31
>prophage 8
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	68755	69586	580410		Bacillus_virus(100.0%)	1	NA	NA
WP_130654136.1|68755_69586_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	41.0	4.0e-29
>prophage 9
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	76012	77095	580410		Planktothrix_phage(100.0%)	1	NA	NA
WP_130654140.1|76012_77095_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	35.0	5.4e-26
>prophage 10
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	82333	85764	580410		Indivirus(50.0%)	2	NA	NA
WP_130654144.1|82333_84025_-	amino acid ABC transporter ATP-binding/permease protein	NA	A0A1V0SE00	Indivirus	25.6	1.4e-07
WP_130654145.1|84021_85764_-	thiol reductant ABC exporter subunit CydD	NA	F2Y302	Organic_Lake_phycodnavirus	32.4	1.4e-12
>prophage 11
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	94008	103117	580410		Planktothrix_phage(33.33%)	9	NA	NA
WP_130654149.1|94008_95064_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.0	1.3e-27
WP_130654150.1|95063_95843_+	glycerophosphodiester phosphodiesterase	NA	A0A173GBD0	Staphylococcus_phage	35.2	3.7e-08
WP_130654151.1|95826_96831_+	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	28.8	1.0e-18
WP_130654152.1|96830_97640_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_130654153.1|97715_99374_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.8	6.8e-20
WP_130654154.1|99502_100375_-	glycerophosphodiester phosphodiesterase	NA	NA	NA	NA	NA
WP_130654155.1|100437_101532_-	alanine--glyoxylate aminotransferase family protein	NA	NA	NA	NA	NA
WP_130654156.1|101543_102326_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	3.3e-17
WP_130654157.1|102322_103117_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.2	4.4e-17
>prophage 12
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	109295	110780	580410		Staphylococcus_phage(100.0%)	1	NA	NA
WP_130654163.1|109295_110780_-	sugar ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.2	7.2e-13
>prophage 13
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	122760	126925	580410		Planktothrix_phage(66.67%)	4	NA	NA
WP_130654174.1|122760_123837_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.0	1.0e-24
WP_130654175.1|124092_125115_+	substrate-binding domain-containing protein	NA	C6ZCU4	Enterobacteria_phage	29.6	7.9e-27
WP_130654176.1|125153_126107_+	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_018246974.1|126103_126925_+	sugar ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.0	7.3e-15
>prophage 14
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	133215	134295	580410		Mycoplasma_phage(100.0%)	1	NA	NA
WP_130654180.1|133215_134295_-	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	45.2	2.6e-20
>prophage 15
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	138856	139642	580410		Trichoplusia_ni_ascovirus(100.0%)	1	NA	NA
WP_130654184.1|138856_139642_+	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	26.9	8.8e-10
>prophage 16
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	143726	145259	580410		Staphylococcus_phage(100.0%)	1	NA	NA
WP_130654188.1|143726_145259_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.7	1.2e-15
>prophage 17
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	150383	151298	580410		Hokovirus(100.0%)	1	NA	NA
WP_130654191.1|150383_151298_-	J domain-containing protein	NA	A0A1V0SF83	Hokovirus	23.1	1.0e-09
>prophage 18
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	155635	163653	580410		Bacillus_virus(33.33%)	7	NA	NA
WP_130654196.1|155635_157345_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	26.4	2.3e-10
WP_105010209.1|157341_158193_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_130654197.1|158189_159128_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_130654198.1|159179_160070_-	proline iminopeptidase-family hydrolase	NA	NA	NA	NA	NA
WP_026188815.1|160214_161012_+	LuxR family transcriptional regulator	NA	A0A1I9KF49	Aeromonas_phage	26.6	1.2e-09
WP_130654199.1|161075_161978_+	proline iminopeptidase-family hydrolase	NA	NA	NA	NA	NA
WP_130654200.1|162510_163653_+	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A0F7LAY0	uncultured_marine_virus	30.8	3.9e-14
>prophage 19
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	169566	172446	580410		Catovirus(33.33%)	3	NA	NA
WP_130654237.1|169566_170478_-	acetamidase	NA	A0A1V0S8X7	Catovirus	27.1	1.2e-05
WP_047620560.1|170711_171329_-	porin family protein	NA	O11861	Bartonella_henselae_phage	37.4	3.0e-13
WP_130654238.1|171639_172446_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	30.6	3.8e-16
>prophage 20
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	181832	189192	580410		Trichoplusia_ni_ascovirus(40.0%)	9	NA	NA
WP_047620578.1|181832_182654_+	sugar ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.1	9.2e-18
WP_047620556.1|182650_183910_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_130654210.1|184036_184765_+	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	29.4	1.9e-06
WP_018449031.1|184808_185573_+	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	34.0	6.3e-21
WP_018449032.1|185750_186146_-	VOC family protein	NA	NA	NA	NA	NA
WP_018449033.1|186238_186667_-	hypothetical protein	NA	NA	NA	NA	NA
WP_018449034.1|186786_187386_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_018449035.1|187459_188488_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	26.7	3.1e-07
WP_018449036.1|188487_189192_-	response regulator	NA	W8CYM9	Bacillus_phage	38.1	2.4e-38
>prophage 21
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	194198	194435	580410		Pelagibacter_phage(100.0%)	1	NA	NA
WP_018246906.1|194198_194435_+	30S ribosomal protein S21	NA	M1HLV7	Pelagibacter_phage	52.9	6.7e-06
>prophage 22
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	199651	200737	580410		Mycoplasma_phage(100.0%)	1	NA	NA
WP_130654214.1|199651_200737_-	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	53.9	4.2e-18
>prophage 23
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	220488	221253	580410		Planktothrix_phage(100.0%)	1	NA	NA
WP_018246881.1|220488_221253_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.6	8.5e-34
>prophage 24
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	229930	231445	580410		Staphylococcus_phage(100.0%)	1	NA	NA
WP_166465934.1|229930_231445_-	sugar ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	4.3e-21
>prophage 25
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	237200	237971	580410		Bacillus_virus(100.0%)	1	NA	NA
WP_028732415.1|237200_237971_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.9	9.2e-28
>prophage 26
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	241502	242282	580410		Planktothrix_phage(100.0%)	1	NA	NA
WP_018246857.1|241502_242282_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	37.2	2.1e-27
>prophage 27
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	252094	253716	580410		Bacillus_virus(100.0%)	2	NA	NA
WP_130653970.1|252094_252844_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.2	3.8e-26
WP_047620511.1|252819_253716_-	ABC transporter permease subunit	NA	G3M9Y4	Bacillus_virus	24.8	2.0e-18
>prophage 28
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	257703	262604	580410		Staphylococcus_phage(33.33%)	5	NA	NA
WP_130653973.1|257703_259200_-	sugar ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.5	6.4e-17
WP_130653974.1|259308_260202_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_130654229.1|260191_260749_-	gluconokinase	NA	NA	NA	NA	NA
WP_130653975.1|260762_261527_-	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	25.4	8.6e-10
WP_130653976.1|261662_262604_+	2-hydroxyacid dehydrogenase	NA	M1H3H9	Paramecium_bursaria_Chlorella_virus	26.0	1.0e-12
>prophage 29
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	272119	273751	580410		Planktothrix_phage(100.0%)	1	NA	NA
WP_130653982.1|272119_273751_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	5.7e-19
>prophage 30
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	287345	291898	580410		Tupanvirus(50.0%)	3	NA	NA
WP_130653987.1|287345_288536_+	formaldehyde dehydrogenase, glutathione-independent	NA	A0A2K9L7I1	Tupanvirus	25.9	3.6e-07
WP_130653988.1|288619_289426_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_130653989.1|289531_291898_+	EAL domain-containing protein	NA	G3MA91	Bacillus_virus	31.2	6.3e-19
>prophage 31
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	301162	304568	580410		Planktothrix_phage(50.0%)	4	NA	NA
WP_130653994.1|301162_301954_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.7	4.8e-32
WP_128400744.1|302003_302357_-	allophanate hydrolase	NA	NA	NA	NA	NA
WP_065277314.1|302349_303018_-	cysteine hydrolase	NA	NA	NA	NA	NA
WP_130653995.1|303017_304568_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	28.0	4.1e-11
>prophage 32
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	311673	321118	580410		Bacillus_virus(25.0%)	9	NA	NA
WP_130654000.1|311673_312471_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.2	6.8e-26
WP_130654001.1|312482_313376_-	nitrate ABC transporter permease	NA	NA	NA	NA	NA
WP_130654002.1|313435_314749_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_018246791.1|315216_316221_-	inorganic phosphate transporter	NA	E5ES24	Ostreococcus_lucimarinus_virus	30.5	4.7e-08
WP_018246790.1|316220_316865_-	DUF47 domain-containing protein	NA	NA	NA	NA	NA
WP_018246789.1|316961_317495_+	NUDIX hydrolase	NA	A0A1C3NEZ8	Phage_NCTB	32.3	1.5e-08
WP_130654003.1|317589_318501_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_047620483.1|318497_319598_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_130654004.1|319594_321118_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	2.5e-21
>prophage 33
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	330913	333907	580410		Escherichia_phage(33.33%)	3	NA	NA
WP_130654012.1|330913_331765_-	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.1	1.3e-19
WP_130654013.1|331926_332712_+	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	30.5	5.9e-14
WP_130654014.1|332758_333907_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.8	3.2e-24
>prophage 34
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	345968	347366	580410		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_130654022.1|345968_347366_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	7.2e-39
>prophage 35
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	353291	358020	580410		Diadromus_pulchellus_ascovirus(50.0%)	4	NA	NA
WP_028732357.1|353291_354059_-	3-hydroxyacyl-CoA dehydrogenase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	27.3	1.5e-06
WP_130654026.1|354189_355224_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_018449167.1|355267_356413_+	isovaleryl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_130654027.1|356409_358020_+	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	61.1	6.2e-18
>prophage 36
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	362792	372264	580410		Bacillus_phage(50.0%)	6	NA	NA
WP_130654030.1|362792_364091_-	HAMP domain-containing protein	NA	W8CYF6	Bacillus_phage	21.0	2.7e-11
WP_018246752.1|364093_364780_-	response regulator	NA	W8CYM9	Bacillus_phage	32.9	5.1e-30
WP_130654031.1|365014_366088_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_130759815.1|366087_369234_+	efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	23.4	4.3e-63
WP_130654033.1|369829_371251_-	mandelate racemase	NA	NA	NA	NA	NA
WP_130654034.1|371247_372264_-	hydroxyacid dehydrogenase	NA	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	28.5	6.5e-13
>prophage 37
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	375884	377992	580410		Planktothrix_phage(50.0%)	2	NA	NA
WP_032980091.1|375884_376946_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	30.6	9.1e-18
WP_018246743.1|376942_377992_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.3	3.9e-05
>prophage 38
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	390574	391675	580410		Bacillus_virus(100.0%)	1	NA	NA
WP_130654040.1|390574_391675_-	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G3M9Y6	Bacillus_virus	32.4	8.3e-22
>prophage 39
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	396957	397974	580410		Enterobacteria_phage(100.0%)	1	NA	NA
WP_018246727.1|396957_397974_+	LacI family transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	29.6	1.3e-26
>prophage 40
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	404630	405608	580410		Bacillus_virus(100.0%)	1	NA	NA
WP_113542929.1|404630_405608_+	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	35.3	1.2e-24
>prophage 41
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	408752	409832	580410		Bacillus_virus(100.0%)	1	NA	NA
WP_018446103.1|408752_409832_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	39.3	7.3e-31
>prophage 42
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	416437	417283	580410		Mycobacterium_phage(100.0%)	1	NA	NA
WP_130654052.1|416437_417283_-	alpha/beta fold hydrolase	NA	A0A1J0GVH7	Mycobacterium_phage	36.3	5.2e-08
>prophage 43
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	421868	423508	580410		Bacillus_virus(100.0%)	2	NA	NA
WP_047620429.1|421868_422657_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.0	8.2e-32
WP_130654054.1|422653_423508_+	ABC transporter permease subunit	NA	G3M9Y4	Bacillus_virus	28.1	2.7e-20
>prophage 44
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	435076	436852	580410		Planktothrix_phage(100.0%)	1	NA	NA
WP_130654065.1|435076_436852_-	amino acid ABC transporter permease/ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	4.1e-31
>prophage 45
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	445313	450941	580410		uncultured_Mediterranean_phage(33.33%)	6	NA	NA
WP_130654072.1|445313_446546_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	44.1	1.2e-26
WP_047620416.1|446556_447009_+	DUF421 domain-containing protein	NA	NA	NA	NA	NA
WP_003549481.1|447091_447856_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_115157797.1|447880_448945_-	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_130654233.1|448941_449934_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	30.3	1.7e-18
WP_018246675.1|449933_450941_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	24.3	1.4e-12
>prophage 46
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	462376	463165	580410		Planktothrix_phage(100.0%)	1	NA	NA
WP_018446148.1|462376_463165_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.4	4.1e-23
>prophage 47
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	467123	468674	580410		Amsacta_moorei_entomopoxvirus(100.0%)	1	NA	NA
WP_130654077.1|467123_468674_+	sugar ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	25.7	3.9e-09
>prophage 48
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	477339	482883	580410		Bacillus_virus(33.33%)	5	NA	NA
WP_018246650.1|477339_478419_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	5.8e-20
WP_020493452.1|478460_479975_-	glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_018246648.1|480094_480868_-	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	28.4	6.6e-18
WP_032980275.1|480962_481868_-	DMT family transporter	NA	NA	NA	NA	NA
WP_130654078.1|481953_482883_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	24.4	2.0e-13
>prophage 49
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	486751	488374	580410		Tupanvirus(100.0%)	1	NA	NA
WP_047620397.1|486751_488374_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	29.7	4.3e-59
>prophage 50
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	498207	500202	580410		Acanthamoeba_polyphaga_moumouvirus(100.0%)	1	NA	NA
WP_130654082.1|498207_500202_-	polysaccharide biosynthesis protein	NA	L7RD47	Acanthamoeba_polyphaga_moumouvirus	24.3	1.1e-11
>prophage 51
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	507016	509161	580410		Bacillus_phage(100.0%)	1	NA	NA
WP_130654087.1|507016_509161_-	peptidase domain-containing ABC transporter	NA	W8CYL7	Bacillus_phage	28.2	1.9e-38
>prophage 52
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	529035	533030	580410		Tupanvirus(33.33%)	4	NA	NA
WP_047622238.1|529035_530253_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L470	Tupanvirus	32.0	1.8e-38
WP_130654093.1|530249_531221_-	NAD-dependent epimerase/dehydratase family protein	NA	A0A2H4UUK0	Bodo_saltans_virus	36.1	2.2e-42
WP_047622236.1|531217_531937_-	acyltransferase	NA	NA	NA	NA	NA
WP_047622235.1|531926_533030_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	E5ES42	Bathycoccus_sp._RCC1105_virus	33.6	6.1e-49
>prophage 53
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	537962	539006	580410		Tupanvirus(100.0%)	1	NA	NA
WP_064648744.1|537962_539006_-	SDR family oxidoreductase	NA	A0A2K9KZK0	Tupanvirus	47.2	1.4e-84
>prophage 54
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	542301	543303	580410	integrase	Brevibacillus_phage(100.0%)	1	542186:542212	545558:545584
542186:542212	attL	GTTTATGCCGACCGGCGAACTATGCCG	NA	NA	NA	NA
WP_166465938.1|542301_543303_-|integrase	tyrosine-type recombinase/integrase	integrase	S5M9V8	Brevibacillus_phage	23.9	1.1e-12
WP_166465938.1|542301_543303_-|integrase	tyrosine-type recombinase/integrase	integrase	S5M9V8	Brevibacillus_phage	23.9	1.1e-12
545558:545584	attR	CGGCATAGTTCGCCGGTCGGCATAAAC	NA	NA	NA	NA
>prophage 55
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	549978	550929	580410		Catovirus(100.0%)	1	NA	NA
WP_130654098.1|549978_550929_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	37.0	4.1e-09
>prophage 56
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	555464	557538	580410		Acanthocystis_turfacea_Chlorella_virus(50.0%)	2	NA	NA
WP_112907995.1|555464_556568_+	GDP-mannose 4,6-dehydratase	NA	M1IBC3	Acanthocystis_turfacea_Chlorella_virus	64.2	1.4e-130
WP_130654101.1|556560_557538_+	GDP-L-fucose synthase	NA	R9S8B8	Prochlorococcus_phage	55.3	6.5e-95
>prophage 57
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	564510	565949	580410		Staphylococcus_phage(50.0%)	2	NA	NA
WP_130654105.1|564510_565230_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	3.9e-12
WP_018247089.1|565229_565949_-	ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	31.3	2.1e-13
>prophage 58
NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	580410	575753	578266	580410		Staphylococcus_phage(50.0%)	2	NA	NA
WP_028732504.1|575753_577271_-	sugar ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.5	2.7e-15
WP_018247078.1|577267_578266_-	LacI family transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	27.4	4.7e-24
>prophage 1
NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	693077	0	3557	693077		Rhizobium_phage(100.0%)	2	NA	NA
WP_130653819.1|1192_2188_+	plasmid partitioning protein RepB	NA	NA	NA	NA	NA
WP_130748251.1|2342_3557_+	replication initiation protein RepC	NA	L7TKN6	Rhizobium_phage	28.9	3.2e-19
>prophage 2
NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	693077	8027	10553	693077		uncultured_virus(100.0%)	1	NA	NA
WP_130653816.1|8027_10553_-	heavy metal translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	36.5	5.1e-83
>prophage 3
NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	693077	31966	40425	693077		Indivirus(33.33%)	5	NA	NA
WP_130653812.1|31966_33865_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	28.8	2.6e-23
WP_130653959.1|33956_35765_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.8	1.3e-45
WP_018246246.1|36039_36657_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_018246247.1|37019_38426_+	hypothetical protein	NA	NA	NA	NA	NA
WP_018246248.1|38496_40425_+	PAS domain-containing hybrid sensor histidine kinase/response regulator	NA	A0A1V0SGX0	Hokovirus	21.1	1.7e-06
>prophage 4
NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	693077	58753	67646	693077		Planktothrix_phage(33.33%)	6	NA	NA
WP_018246263.1|58753_60649_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	9.2e-21
WP_026188741.1|60803_62147_-	adenylate/guanylate cyclase domain-containing protein	NA	NA	NA	NA	NA
WP_018246265.1|62601_63939_+	nucleotide sugar dehydrogenase	NA	M1HZW8	Acanthocystis_turfacea_Chlorella_virus	30.8	3.8e-37
WP_026188742.1|63928_65104_-	DUF3095 domain-containing protein	NA	NA	NA	NA	NA
WP_130653809.1|65329_65809_+	hypothetical protein	NA	NA	NA	NA	NA
WP_130653808.1|65855_67646_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.8	2.4e-34
>prophage 5
NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	693077	91024	94490	693077		Planktothrix_phage(50.0%)	4	NA	NA
WP_020572945.1|91024_91753_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.6	1.4e-33
WP_130653801.1|91812_92880_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_130653800.1|92884_93715_+	shikimate dehydrogenase	NA	NA	NA	NA	NA
WP_130653799.1|93722_94490_-	glucose 1-dehydrogenase	NA	Q06VL0	Trichoplusia_ni_ascovirus	32.8	2.2e-21
>prophage 6
NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	693077	117474	121034	693077		Ostreococcus_tauri_virus(50.0%)	3	NA	NA
WP_130653955.1|117474_119226_-	acetolactate synthase 3 large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	31.2	1.5e-62
WP_027687751.1|119418_120024_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_130653781.1|120080_121034_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	33.5	2.1e-34
>prophage 7
NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	693077	140013	141744	693077		Micromonas_sp._RCC1109_virus(100.0%)	1	NA	NA
WP_130653765.1|140013_141744_-	ubiquinone-dependent pyruvate dehydrogenase	NA	E5EQ70	Micromonas_sp._RCC1109_virus	24.8	1.4e-31
>prophage 8
NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	693077	147105	155823	693077		IC4_retrovirus(50.0%)	4	NA	NA
WP_130653761.1|147105_152682_-	AAA family ATPase	NA	Q67624	IC4_retrovirus	28.5	3.4e-07
WP_027687776.1|153070_154018_+	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_130653760.1|154040_155102_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_130653759.1|155079_155823_+	sugar ABC transporter ATP-binding protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	26.6	5.8e-11
>prophage 9
NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	693077	160933	164461	693077		uncultured_virus(100.0%)	1	NA	NA
WP_130653753.1|160933_164461_+	adenylate/guanylate cyclase domain-containing protein	NA	A0A218MLZ2	uncultured_virus	29.3	2.0e-13
>prophage 10
NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	693077	191310	201036	693077		Tupanvirus(33.33%)	5	NA	NA
WP_130653728.1|191310_193257_-	PAS domain S-box protein	NA	A0A2K9L0Z8	Tupanvirus	26.3	3.3e-05
WP_130653727.1|193431_193824_+	DUF983 domain-containing protein	NA	NA	NA	NA	NA
WP_130653726.1|193835_194270_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_112908861.1|194545_195376_+	alpha/beta hydrolase	NA	A0A1J0GNR5	Mycobacterium_phage	29.4	5.8e-20
WP_130653725.1|195567_201036_+	AAA family ATPase	NA	M1I231	Acanthocystis_turfacea_Chlorella_virus	25.7	5.6e-10
>prophage 11
NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	693077	206036	206696	693077		Planktothrix_phage(100.0%)	1	NA	NA
WP_130653722.1|206036_206696_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.6	1.2e-31
>prophage 12
NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	693077	216141	216771	693077		Yellowstone_lake_phycodnavirus(100.0%)	1	NA	NA
WP_130653716.1|216141_216771_-	J domain-containing protein	NA	A0A0P0YNN4	Yellowstone_lake_phycodnavirus	50.0	8.3e-11
>prophage 13
NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	693077	220048	221584	693077		Catovirus(100.0%)	1	NA	NA
WP_130653713.1|220048_221584_-	histidine ammonia-lyase	NA	A0A1V0S940	Catovirus	36.3	3.8e-73
>prophage 14
NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	693077	226103	227801	693077		Bacillus_virus(100.0%)	1	NA	NA
WP_130653709.1|226103_227801_+	FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	29.0	3.8e-26
>prophage 15
NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	693077	233527	235788	693077		Planktothrix_phage(50.0%)	2	NA	NA
WP_018246352.1|233527_234304_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	35.7	7.6e-30
WP_130653706.1|234300_235788_+	histidine ammonia-lyase	NA	A0A1V0S940	Catovirus	32.9	9.4e-45
>prophage 16
NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	693077	241794	245656	693077		Tetraselmis_virus(50.0%)	2	NA	NA
WP_130653702.1|241794_243465_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	31.4	9.8e-51
WP_130653701.1|243760_245656_+	HAMP domain-containing histidine kinase	NA	A0A2K9L0Z8	Tupanvirus	24.0	3.4e-07
>prophage 17
NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	693077	257979	258822	693077		Bordetella_phage(100.0%)	1	NA	NA
WP_080763963.1|257979_258822_-	AraC family transcriptional regulator	NA	A0A291LAM3	Bordetella_phage	34.6	6.8e-08
>prophage 18
NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	693077	265071	266739	693077		Planktothrix_phage(100.0%)	1	NA	NA
WP_130653690.1|265071_266739_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	7.9e-16
>prophage 19
NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	693077	273584	275372	693077		Lake_Baikal_phage(100.0%)	1	NA	NA
WP_018448444.1|273584_275372_+	HAMP domain-containing protein	NA	A0A2H4N7Z5	Lake_Baikal_phage	31.0	1.4e-15
>prophage 20
NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	693077	283467	288999	693077		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_130653949.1|283467_288999_-	AAA family ATPase	NA	M1I1I7	Paramecium_bursaria_Chlorella_virus	28.3	5.1e-11
>prophage 21
NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	693077	302028	302925	693077		Bacillus_phage(100.0%)	1	NA	NA
WP_130653678.1|302028_302925_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	34.4	4.8e-12
>prophage 22
NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	693077	315941	321623	693077		Bacillus_virus(50.0%)	6	NA	NA
WP_130723514.1|315941_316862_+	DUF1738 domain-containing protein	NA	A0A1V0EBY3	Caulobacter_phage	51.4	2.5e-64
WP_130653666.1|316905_317151_-	WGR domain-containing protein	NA	NA	NA	NA	NA
WP_130653665.1|317248_317377_-	hypothetical protein	NA	NA	NA	NA	NA
WP_130653664.1|317459_319700_-	EAL domain-containing protein	NA	G3MA91	Bacillus_virus	32.0	7.6e-14
WP_115156824.1|319824_320637_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	1.0e-13
WP_130653663.1|320633_321623_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	29.7	5.3e-12
>prophage 23
NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	693077	337202	343285	693077		Diadromus_pulchellus_ascovirus(33.33%)	6	NA	NA
WP_027687878.1|337202_337997_+	SDR family oxidoreductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	26.7	1.2e-09
WP_130653654.1|338092_340249_+	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_018246433.1|340257_341265_+	DNA topoisomerase IB	NA	A0A0U2TSJ7	Niemeyer_virus	29.4	8.9e-31
WP_018246434.1|341261_342140_+	DNA polymerase domain-containing protein	NA	NA	NA	NA	NA
WP_130653653.1|342262_342988_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_130653652.1|342994_343285_-	DUF3175 domain-containing protein	NA	A0A0F6TH17	Sinorhizobium_phage	60.2	2.6e-23
>prophage 24
NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	693077	348110	348752	693077		Pseudomonas_phage(100.0%)	1	NA	NA
WP_020493448.1|348110_348752_-	UdgX family uracil-DNA binding protein	NA	A0A2I6PIA1	Pseudomonas_phage	34.0	2.2e-14
>prophage 25
NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	693077	355494	360111	693077		Mycobacterium_phage(100.0%)	1	NA	NA
WP_166465927.1|355494_360111_+	Ti-type conjugative transfer relaxase TraA	NA	V5UQN3	Mycobacterium_phage	27.1	2.3e-17
>prophage 26
NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	693077	366384	381259	693077		Acanthocystis_turfacea_Chlorella_virus(16.67%)	14	NA	NA
WP_130653939.1|366384_369063_-	HAD-IC family P-type ATPase	NA	M1IAU8	Acanthocystis_turfacea_Chlorella_virus	28.1	1.8e-70
WP_018246458.1|369288_369612_+	TraR/DksA family transcriptional regulator	NA	NA	NA	NA	NA
WP_018246459.1|369640_371503_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	29.7	1.7e-59
WP_130653938.1|371499_372321_-	universal stress protein	NA	NA	NA	NA	NA
WP_026188768.1|372450_372909_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_166465928.1|372955_373327_+	hypothetical protein	NA	NA	NA	NA	NA
WP_018246462.1|373337_373748_-	universal stress protein	NA	NA	NA	NA	NA
WP_018246463.1|373749_374049_-	hypothetical protein	NA	NA	NA	NA	NA
WP_018246464.1|374195_375197_+	zinc-dependent alcohol dehydrogenase family protein	NA	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	29.7	5.9e-19
WP_018246465.1|375305_376661_+	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	27.8	6.4e-08
WP_026188770.1|376785_377433_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_018246467.1|377761_379681_-	PAS domain-containing hybrid sensor histidine kinase/response regulator	NA	A0A1V0SGX0	Hokovirus	18.8	6.9e-08
WP_018246468.1|379658_380393_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_018246469.1|380515_381259_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	31.0	1.4e-25
>prophage 27
NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	693077	391362	392739	693077		Lake_Baikal_phage(100.0%)	1	NA	NA
WP_018246480.1|391362_392739_+	adenylate/guanylate cyclase domain-containing protein	NA	A0A2H4N7Z5	Lake_Baikal_phage	26.0	2.2e-16
>prophage 28
NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	693077	400635	401808	693077		Pandoravirus(100.0%)	1	NA	NA
WP_018246491.1|400635_401808_+	hypothetical protein	NA	A0A0B5JD48	Pandoravirus	31.6	2.0e-13
>prophage 29
NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	693077	404977	410378	693077		Planktothrix_phage(66.67%)	5	NA	NA
WP_018246494.1|404977_406036_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	35.0	2.2e-24
WP_018246495.1|406106_406859_+	metallophosphatase	NA	NA	NA	NA	NA
WP_018246496.1|406966_408199_+	peptidase T	NA	NA	NA	NA	NA
WP_018246497.1|408236_409073_-	cell wall hydrolase	NA	A0A142EZU6	Stenotrophomonas_phage	30.7	1.3e-06
WP_018246498.1|409337_410378_-	sulfate/molybdate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.3	2.4e-31
>prophage 30
NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	693077	415080	429349	693077		Bacillus_phage(16.67%)	12	NA	NA
WP_018246504.1|415080_415773_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	31.1	2.0e-21
WP_018246505.1|415769_418478_-	sensor histidine kinase KdpD	NA	Q8QNA2	Ectocarpus_siliculosus_virus	34.6	3.8e-12
WP_130653932.1|418590_419160_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_018246507.1|419194_421255_-	potassium-transporting ATPase subunit KdpB	NA	E4ZFI9	Streptococcus_phage	27.9	4.2e-35
WP_018246509.1|421464_423168_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_003547774.1|423237_423327_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_130747913.1|423817_424861_+	NAD(P)-dependent alcohol dehydrogenase	NA	E3SJ82	Synechococcus_phage	23.8	8.4e-08
WP_018246511.1|424876_425446_-	DedA family protein	NA	NA	NA	NA	NA
WP_018246512.1|425476_426838_-	FAD-containing oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	35.0	6.3e-64
WP_018246513.1|426834_427293_-	membrane protein	NA	NA	NA	NA	NA
WP_018246514.1|427347_428271_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_018246515.1|428359_429349_+	hypothetical protein	NA	M1H2P4	Paramecium_bursaria_Chlorella_virus	26.3	7.0e-12
>prophage 31
NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	693077	433780	439768	693077	holin	Bacillus_virus(25.0%)	6	NA	NA
WP_018246521.1|433780_434563_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	27.6	3.4e-14
WP_130653929.1|434562_435264_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.5	2.0e-13
WP_018246523.1|435268_436156_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_018246524.1|436157_437147_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_026188776.1|437281_438877_+|holin	choline dehydrogenase	holin	A0A1V0S9M4	Catovirus	31.4	1.5e-56
WP_018246526.1|438886_439768_+	3-hydroxyisobutyrate dehydrogenase	NA	A0A077SLF7	Escherichia_phage	30.2	4.1e-24
>prophage 32
NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	693077	444476	447941	693077		Amsacta_moorei_entomopoxvirus(50.0%)	3	NA	NA
WP_115156777.1|444476_446012_-	sugar ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	25.8	1.3e-12
WP_018448549.1|446084_447080_-	rhamnose ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_018246533.1|447128_447941_-	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	28.4	3.1e-18
>prophage 33
NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	693077	456510	457368	693077		Trichoplusia_ni_ascovirus(100.0%)	1	NA	NA
WP_130653925.1|456510_457368_+	SDR family oxidoreductase	NA	A0A2N9QUX2	Trichoplusia_ni_ascovirus	46.6	3.2e-61
>prophage 34
NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	693077	462221	463736	693077	holin	Catovirus(100.0%)	1	NA	NA
WP_130653922.1|462221_463736_-|holin	choline-sulfatase	holin	A0A1V0SA98	Catovirus	25.6	7.9e-23
>prophage 35
NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	693077	468207	469907	693077		Planktothrix_phage(50.0%)	2	NA	NA
WP_047617922.1|468207_469107_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.4	1.7e-17
WP_047617924.1|469103_469907_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	26.1	9.6e-12
>prophage 36
NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	693077	495801	498431	693077		Planktothrix_phage(50.0%)	2	NA	NA
WP_166465929.1|495801_497490_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.0	1.2e-16
WP_130653913.1|497486_498431_-	acetamidase/formamidase family protein	NA	A0A1V0S8X7	Catovirus	29.6	5.6e-27
>prophage 37
NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	693077	509323	512969	693077		Acanthocystis_turfacea_Chlorella_virus(50.0%)	3	NA	NA
WP_130653907.1|509323_509836_+	RidA family protein	NA	M1I5B0	Acanthocystis_turfacea_Chlorella_virus	36.8	1.2e-18
WP_130653906.1|509904_511101_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_130653905.1|511133_512969_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-17
>prophage 38
NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	693077	530101	531730	693077		Planktothrix_phage(100.0%)	1	NA	NA
WP_130748323.1|530101_531730_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.2	5.3e-25
>prophage 39
NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	693077	542628	543804	693077		Planktothrix_phage(100.0%)	1	NA	NA
WP_018448635.1|542628_543804_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	35.0	3.6e-23
>prophage 40
NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	693077	557865	562129	693077		Bodo_saltans_virus(33.33%)	4	NA	NA
WP_130748314.1|557865_559887_-	beta-N-acetylhexosaminidase	NA	A0A2H4UUW7	Bodo_saltans_virus	23.8	1.2e-05
WP_130748313.1|559908_560379_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_018246108.1|560390_561317_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.3	1.1e-16
WP_113543205.1|561313_562129_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	25.1	5.2e-13
>prophage 41
NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	693077	573072	580468	693077		Trichoplusia_ni_ascovirus(33.33%)	8	NA	NA
WP_032980998.1|573072_573828_-	2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD	NA	Q06VL0	Trichoplusia_ni_ascovirus	34.3	8.2e-21
WP_018246118.1|573833_574670_-	5-dehydro-4-deoxy-D-glucuronate isomerase	NA	NA	NA	NA	NA
WP_003548073.1|575294_575441_-	DUF1127 domain-containing protein	NA	NA	NA	NA	NA
WP_026231026.1|575631_576612_-	3'-5' exonuclease	NA	U5Q053	Bacillus_virus	37.3	4.6e-08
WP_130748309.1|576706_578086_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_130748308.1|578082_578757_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_130748307.1|578881_579481_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_130748306.1|579577_580468_-	haloalkane dehalogenase	NA	B9U1C3	Vaccinia_virus	34.6	4.0e-43
>prophage 42
NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	693077	590264	590474	693077		uncultured_virus(100.0%)	1	NA	NA
WP_003548109.1|590264_590474_+	cold-shock protein	NA	A0A218MMZ6	uncultured_virus	54.7	8.9e-10
>prophage 43
NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	693077	599752	600637	693077		Synechococcus_phage(100.0%)	1	NA	NA
WP_130748300.1|599752_600637_-	formyltetrahydrofolate deformylase	NA	M4QRX9	Synechococcus_phage	39.3	3.4e-10
>prophage 44
NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	693077	604295	605204	693077		Organic_Lake_phycodnavirus(100.0%)	1	NA	NA
WP_112908747.1|604295_605204_-	glutamine amidotransferase family protein	NA	F2Y1G4	Organic_Lake_phycodnavirus	29.2	1.1e-06
>prophage 45
NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	693077	614125	617762	693077		Halovirus(50.0%)	2	NA	NA
WP_130748296.1|614125_615682_+	RNA-binding protein	NA	R4TL80	Halovirus	25.7	4.7e-31
WP_047618088.1|616355_617762_+	RtcB family protein	NA	L7TNL0	Rhizobium_phage	50.6	3.2e-127
>prophage 46
NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	693077	637521	638292	693077		Chrysochromulina_ericina_virus(100.0%)	1	NA	NA
WP_130748333.1|637521_638292_+	glucose 1-dehydrogenase	NA	A0A0N9R355	Chrysochromulina_ericina_virus	23.8	2.8e-08
>prophage 47
NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	693077	650708	654438	693077	protease	Yaba_monkey_tumor_virus(50.0%)	2	NA	NA
WP_130748278.1|650708_651893_-	serpin family protein	NA	Q6TUM5	Yaba_monkey_tumor_virus	26.5	5.8e-13
WP_130748277.1|651906_654438_-|protease	trypsin-like serine protease	protease	Q6JKF3	Neodiprion_sertifer_nucleopolyhedrovirus	33.4	3.0e-27
>prophage 48
NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	693077	670019	670424	693077		Sinorhizobium_phage(100.0%)	1	NA	NA
WP_112908785.1|670019_670424_+	helix-turn-helix transcriptional regulator	NA	Q8W6G2	Sinorhizobium_phage	44.0	5.9e-18
