The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP050079	Pediococcus acidilactici strain PMC48 chromosome, complete genome	2043929	435881	443555	2043929		Bacillus_phage(33.33%)	7	NA	NA
WP_141782997.1|435881_436997_+	peptide chain release factor 2	NA	B5LLF2	Mycobacterium_phage	51.6	1.4e-05
WP_024862566.1|437009_437714_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.2	5.6e-40
WP_005916145.1|437685_439074_+	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	31.0	2.6e-25
WP_166481340.1|439301_441089_+	phosphate ABC transporter permease subunit PstC	NA	M4QRU1	Synechococcus_phage	27.7	1.1e-07
WP_008841839.1|441085_441973_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_008841838.1|441977_442784_+	phosphate ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	43.2	1.5e-09
WP_008841837.1|442796_443555_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	27.9	5.5e-17
>prophage 2
NZ_CP050079	Pediococcus acidilactici strain PMC48 chromosome, complete genome	2043929	627825	694109	2043929	integrase,head,tRNA,terminase,holin,capsid,portal,protease,tail	Lactobacillus_phage(76.32%)	74	626882:626898	684279:684295
626882:626898	attL	TAATGGACGTTTAGGTA	NA	NA	NA	NA
WP_002830673.1|627825_630243_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	68.1	0.0e+00
WP_002830674.1|630498_632181_+	polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_004165588.1|632191_632911_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_004165589.1|633017_633848_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_002830677.1|633973_634435_+	universal stress protein	NA	NA	NA	NA	NA
WP_002830678.1|634764_635049_+	DUF2089 family protein	NA	NA	NA	NA	NA
WP_002830680.1|635045_635339_+	hypothetical protein	NA	NA	NA	NA	NA
WP_166481367.1|635422_637132_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_098040485.1|637414_639061_-	alpha,alpha-phosphotrehalase	NA	NA	NA	NA	NA
WP_002830683.1|639064_639787_-	trehalose operon repressor	NA	NA	NA	NA	NA
WP_098040484.1|640003_641968_+	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_002830685.1|642091_642751_-	deoxynucleoside kinase	NA	C1KFI3	Lactobacillus_virus	45.0	1.4e-45
WP_166481368.1|643238_644057_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_008842219.1|644258_644477_+	hypothetical protein	NA	NA	NA	NA	NA
WP_008842220.1|644476_644755_+	heavy metal-binding domain-containing protein	NA	NA	NA	NA	NA
WP_036685783.1|647601_649125_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase	NA	NA	NA	NA	NA
WP_002830692.1|649124_650381_+	carboxylate--amine ligase	NA	NA	NA	NA	NA
WP_002830693.1|650386_651094_+	amino acid racemase	NA	NA	NA	NA	NA
WP_002830694.1|651185_651995_+	DNA/RNA non-specific endonuclease	NA	NA	NA	NA	NA
WP_002830695.1|652077_652890_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_008842223.1|653171_653861_-	N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA	NA
WP_166481369.1|654256_655336_-|integrase	site-specific integrase	integrase	Q9ZXG6	Leuconostoc_phage	35.7	3.7e-43
WP_166481370.1|655471_656473_-	Abi family protein	NA	M1PS09	Streptococcus_phage	35.6	4.0e-47
WP_166481371.1|657002_657200_-	hypothetical protein	NA	NA	NA	NA	NA
WP_166481372.1|657433_657799_-	hypothetical protein	NA	D7RWL4	Brochothrix_phage	49.5	1.1e-18
WP_128212081.1|657844_658252_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0M7RF74	Lactobacillus_phage	32.8	2.3e-06
WP_002831842.1|658260_658602_-	helix-turn-helix transcriptional regulator	NA	A0A097QQ00	Enterococcus_phage	39.0	6.7e-15
WP_159215549.1|658858_659065_+	hypothetical protein	NA	NA	NA	NA	NA
WP_166481373.1|659054_659363_-	hypothetical protein	NA	NA	NA	NA	NA
WP_036672974.1|659430_659640_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_029258004.1|659824_660028_-	hypothetical protein	NA	NA	NA	NA	NA
WP_166481374.1|660085_660853_+	phage repressor protein/antirepressor Ant	NA	L0P8P6	Lactobacillus_phage	68.8	5.3e-100
WP_166481375.1|660865_661072_+	hypothetical protein	NA	NA	NA	NA	NA
WP_159209346.1|661338_661956_-	hypothetical protein	NA	NA	NA	NA	NA
WP_166481376.1|662181_662637_+	chromosome segregation protein SMC	NA	NA	NA	NA	NA
WP_166481377.1|662637_663336_+	ERF family protein	NA	I6TJU2	Staphylococcus_virus	38.3	3.4e-21
WP_166481378.1|663328_663754_+	single-stranded DNA-binding protein	NA	A0A2D1GPB7	Lactobacillus_phage	58.9	9.5e-43
WP_128472133.1|663765_664443_+	hypothetical protein	NA	E9LUU3	Lactobacillus_phage	63.0	4.1e-80
WP_128472134.1|664432_664657_+	hypothetical protein	NA	NA	NA	NA	NA
WP_128472135.1|664660_664909_-	hypothetical protein	NA	NA	NA	NA	NA
WP_128472136.1|664942_665704_+	hypothetical protein	NA	A0A1W6JNI1	Staphylococcus_phage	46.3	2.9e-50
WP_166481379.1|665684_666500_+	ATP-binding protein	NA	O03914	Lactobacillus_phage	45.3	3.4e-57
WP_166481380.1|666617_667250_+	RNA polymerase subunit sigma-70	NA	NA	NA	NA	NA
WP_166481381.1|667230_667632_+	RusA family crossover junction endodeoxyribonuclease	NA	A8YQM5	Lactobacillus_phage	46.3	4.0e-27
WP_166481382.1|667628_667793_+	hypothetical protein	NA	NA	NA	NA	NA
WP_166481383.1|667764_668133_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
WP_166481384.1|668217_668652_+	RNA polymerase subunit sigma-70	NA	O03925	Lactobacillus_phage	34.8	1.0e-12
WP_166481385.1|669193_669346_+	hypothetical protein	NA	E9LUP6	Lactobacillus_phage	51.8	1.6e-05
WP_166481386.1|669314_669827_+	HNH endonuclease	NA	E9LUP7	Lactobacillus_phage	87.8	5.8e-79
WP_166481387.1|669924_670182_+	hypothetical protein	NA	NA	NA	NA	NA
WP_166481388.1|670371_670830_+|terminase	phage terminase small subunit P27 family	terminase	E9LUP8	Lactobacillus_phage	93.4	6.4e-77
WP_166481389.1|670832_672731_+|terminase	terminase large subunit	terminase	E9LUP9	Lactobacillus_phage	96.0	0.0e+00
WP_024863127.1|672720_672915_+	DUF1056 family protein	NA	E9LUQ0	Lactobacillus_phage	90.6	4.5e-24
WP_166481390.1|672917_674111_+|portal	phage portal protein	portal	E9LUQ1	Lactobacillus_phage	95.7	5.7e-218
WP_159209379.1|674088_674838_+|protease	Clp protease ClpP	protease	E9LUQ2	Lactobacillus_phage	95.6	4.2e-126
WP_166481391.1|674837_676070_+|capsid	phage major capsid protein	capsid	E9LUQ3	Lactobacillus_phage	92.9	3.7e-212
WP_024863131.1|676142_676475_+|head,tail	phage gp6-like head-tail connector protein	head,tail	E9LUQ4	Lactobacillus_phage	86.1	2.1e-45
WP_166481392.1|676464_676827_+|head	phage head closure protein	head	A0A2P0ZLF0	Lactobacillus_phage	71.1	4.0e-42
WP_166481393.1|676813_677221_+	HK97 gp10 family phage protein	NA	A0A2P0ZLE6	Lactobacillus_phage	90.2	3.2e-64
WP_166481394.1|677220_677601_+	DUF806 family protein	NA	A0A2P0ZLF4	Lactobacillus_phage	91.3	7.6e-60
WP_166481395.1|677614_678319_+|tail	phage tail protein	tail	A0A2P0ZLH1	Lactobacillus_phage	90.0	3.8e-105
WP_159209317.1|678395_678770_+	hypothetical protein	NA	A0A2P0ZLH4	Lactobacillus_phage	94.4	2.0e-57
WP_053905877.1|678814_679000_+	hypothetical protein	NA	NA	NA	NA	NA
WP_166481396.1|679029_683685_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A2P0ZLG0	Lactobacillus_phage	65.6	0.0e+00
WP_166481397.1|683761_685531_+|tail	phage tail protein	tail	E9LUR2	Lactobacillus_phage	63.1	9.3e-225
684279:684295	attR	TACCTAAACGTCCATTA	NA	NA	NA	NA
WP_166481398.1|685551_687912_+	hypothetical protein	NA	E9LUR3	Lactobacillus_phage	80.4	0.0e+00
WP_166481399.1|687913_691207_+	hypothetical protein	NA	A0A1S5RCP2	Lactobacillus_phage	25.4	6.5e-46
WP_166481400.1|691199_691427_+	hypothetical protein	NA	NA	NA	NA	NA
WP_166481401.1|691419_691629_+	hypothetical protein	NA	NA	NA	NA	NA
WP_166481402.1|691671_691920_+	hypothetical protein	NA	Q9AZX0	Lactococcus_phage	45.2	4.9e-07
WP_166481403.1|691936_692296_+	hypothetical protein	NA	E9LUR7	Lactobacillus_phage	79.0	1.7e-45
WP_166481404.1|692307_693471_+	LysM peptidoglycan-binding domain-containing protein	NA	O03950	Lactobacillus_phage	57.9	2.2e-41
WP_138492841.1|693470_693734_+|holin	holin	holin	E9LUR9	Lactobacillus_phage	85.1	3.6e-32
WP_159215953.1|693743_694109_+|holin	holin	holin	A0A2H4PBB2	Lactobacillus_phage	78.2	2.2e-24
>prophage 3
NZ_CP050079	Pediococcus acidilactici strain PMC48 chromosome, complete genome	2043929	917698	924883	2043929		Lactobacillus_phage(50.0%)	18	NA	NA
WP_008840853.1|917698_918061_-	helix-turn-helix transcriptional regulator	NA	A0A0P0IZG9	Lactobacillus_phage	40.6	4.2e-15
WP_008840854.1|918203_918434_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_008840855.1|918430_918568_+	hypothetical protein	NA	NA	NA	NA	NA
WP_036685008.1|918599_918968_+	hypothetical protein	NA	NA	NA	NA	NA
WP_166481435.1|918959_919157_-	hypothetical protein	NA	NA	NA	NA	NA
WP_036685013.1|919225_919441_+	hypothetical protein	NA	NA	NA	NA	NA
WP_036685090.1|919543_919990_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_008840858.1|919990_920272_+	hypothetical protein	NA	NA	NA	NA	NA
WP_158002712.1|920273_920417_+	hypothetical protein	NA	NA	NA	NA	NA
WP_008840859.1|920509_920755_+	hypothetical protein	NA	NA	NA	NA	NA
WP_008840860.1|920747_921545_+	phage recombination protein Bet	NA	A8ATK8	Listeria_phage	57.3	1.2e-62
WP_052017552.1|921453_922335_+	hypothetical protein	NA	A0A0P0IZH9	Lactobacillus_phage	44.4	3.6e-60
WP_008840862.1|922346_922811_+	hypothetical protein	NA	A0A1L2JY26	Aeribacillus_phage	55.9	1.2e-17
WP_008840863.1|922837_923521_+	hypothetical protein	NA	A0A2D1GP81	Lactobacillus_phage	44.9	9.0e-35
WP_036685016.1|923504_923912_+	hypothetical protein	NA	NA	NA	NA	NA
WP_144235476.1|923926_924163_+	hypothetical protein	NA	NA	NA	NA	NA
WP_052017553.1|924177_924414_+	hypothetical protein	NA	NA	NA	NA	NA
WP_008840867.1|924406_924883_+	single-stranded DNA-binding protein	NA	A0A2H4J1H8	uncultured_Caudovirales_phage	58.1	1.5e-41
>prophage 4
NZ_CP050079	Pediococcus acidilactici strain PMC48 chromosome, complete genome	2043929	1091996	1100557	2043929		Synechococcus_phage(33.33%)	8	NA	NA
WP_008840996.1|1091996_1092578_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.2	8.8e-23
WP_008840997.1|1092577_1093624_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A0E3F0L1	Synechococcus_phage	38.7	2.7e-54
WP_166481451.1|1093626_1095096_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	34.5	2.8e-57
WP_166481452.1|1095160_1097284_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	41.4	1.2e-146
WP_008841001.1|1097971_1098232_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_008841002.1|1098218_1098953_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A1D7SLB8	Cyanophage	42.5	1.3e-42
WP_008841003.1|1098930_1100091_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_008841004.1|1100074_1100557_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	39.7	1.6e-17
>prophage 5
NZ_CP050079	Pediococcus acidilactici strain PMC48 chromosome, complete genome	2043929	1334304	1343091	2043929		Bacillus_virus(14.29%)	9	NA	NA
WP_002832038.1|1334304_1334859_-	cysteine hydrolase	NA	G3MA16	Bacillus_virus	43.4	1.1e-30
WP_024863049.1|1334891_1336193_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.3	4.5e-19
WP_036685871.1|1336375_1337668_+	adenylosuccinate synthase	NA	A0A285PX35	Cedratvirus	35.0	1.0e-63
WP_008842327.1|1337756_1338551_-	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	26.2	1.8e-10
WP_008842326.1|1338573_1339413_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.1	5.3e-69
WP_160185653.1|1339540_1339912_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_056985103.1|1340002_1340857_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002832045.1|1341097_1341829_+	aquaporin family protein	NA	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	32.2	5.9e-24
WP_002832047.1|1342089_1343091_-	catabolite control protein A	NA	C6ZCU4	Enterobacteria_phage	27.8	1.2e-22
>prophage 6
NZ_CP050079	Pediococcus acidilactici strain PMC48 chromosome, complete genome	2043929	1482979	1522071	2043929	head,terminase,holin,capsid,portal,protease,tail	Erysipelothrix_phage(82.61%)	40	NA	NA
WP_141783081.1|1482979_1483069_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
WP_166481475.1|1483258_1483702_+	hypothetical protein	NA	NA	NA	NA	NA
WP_166481572.1|1484644_1485091_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_166481476.1|1485171_1488267_-	type I restriction endonuclease subunit R	NA	NA	NA	NA	NA
WP_166481477.1|1488329_1489490_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	28.4	2.6e-10
WP_166481478.1|1489489_1492069_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	45.5	2.1e-108
WP_141783088.1|1492085_1492307_-	helix-turn-helix domain-containing protein	NA	A0A2K5B263	Erysipelothrix_phage	70.5	7.9e-17
WP_141783089.1|1492320_1494936_-	helicase	NA	NA	NA	NA	NA
WP_141783090.1|1494940_1496260_-	DUF1837 domain-containing protein	NA	NA	NA	NA	NA
WP_141783091.1|1496634_1497162_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_044005185.1|1497266_1497464_+	hypothetical protein	NA	A0A2I4R673	Erysipelothrix_phage	40.4	1.7e-07
WP_141783093.1|1497450_1497783_+	hypothetical protein	NA	NA	NA	NA	NA
WP_141783094.1|1497766_1498909_+	DUF2800 domain-containing protein	NA	A0A2K5B2A8	Erysipelothrix_phage	54.6	1.8e-112
WP_166481479.1|1498910_1499462_+	DUF2815 family protein	NA	A0A2K5B2A9	Erysipelothrix_phage	71.6	8.2e-71
WP_166481480.1|1499512_1501447_+	DNA polymerase	NA	A0A2K5B2B0	Erysipelothrix_phage	58.5	7.8e-225
WP_081509838.1|1501541_1501940_+	hypothetical protein	NA	A0A2K5B270	Erysipelothrix_phage	35.5	2.4e-16
WP_166481481.1|1501942_1504189_+	DNA primase	NA	E4ZFK6	Streptococcus_phage	48.4	7.4e-211
WP_141783098.1|1504382_1504685_+	VRR-NUC domain-containing protein	NA	A0A2K5B272	Erysipelothrix_phage	56.7	1.2e-20
WP_141783099.1|1504644_1506027_+	DEAD/DEAH box helicase	NA	A0A2K5B273	Erysipelothrix_phage	66.7	1.7e-157
WP_081509815.1|1505995_1506466_+	restriction endonuclease	NA	NA	NA	NA	NA
WP_141783100.1|1506600_1506978_+	HNH endonuclease	NA	A0A2K5B276	Erysipelothrix_phage	53.0	3.3e-31
WP_087448601.1|1507100_1507643_+|terminase	terminase	terminase	A0A2K5B277	Erysipelothrix_phage	59.6	2.7e-58
WP_166481482.1|1507642_1508872_+	DNA modification methylase	NA	A0A2I4R670	Erysipelothrix_phage	61.9	6.4e-148
WP_141783102.1|1508945_1509578_+	hypothetical protein	NA	A0A2K5B280	Erysipelothrix_phage	39.0	3.1e-37
WP_003672638.1|1509570_1509777_+	DUF5049 domain-containing protein	NA	NA	NA	NA	NA
WP_166481483.1|1509842_1511444_+|terminase	terminase large subunit	terminase	A0A2K5B285	Erysipelothrix_phage	78.5	4.4e-250
WP_003672640.1|1511471_1511633_+	hypothetical protein	NA	NA	NA	NA	NA
WP_141783104.1|1511773_1511935_-	AbrB family transcriptional regulator	NA	NA	NA	NA	NA
WP_141783151.1|1512057_1513248_+|portal	phage portal protein	portal	Q6DMU2	Streptococcus_phage	64.7	1.4e-152
WP_141783105.1|1513244_1513907_+|protease	Clp protease ClpP	protease	A0A2K5B288	Erysipelothrix_phage	56.5	6.4e-54
WP_141783106.1|1513927_1515106_+|capsid	phage major capsid protein	capsid	A0A2I4R671	Erysipelothrix_phage	59.0	9.8e-130
WP_081509824.1|1515119_1515398_+|head,tail	phage gp6-like head-tail connector protein	head,tail	NA	NA	NA	NA
WP_003672649.1|1515398_1515779_+|head	phage head closure protein	head	NA	NA	NA	NA
WP_141783107.1|1515768_1516191_+|holin	phage holin family protein	holin	A0A2K5B2A2	Erysipelothrix_phage	64.2	3.7e-39
WP_003672653.1|1516301_1516490_+	hypothetical protein	NA	NA	NA	NA	NA
WP_141783108.1|1516551_1518105_+	recombinase family protein	NA	A0A2K5B2B2	Erysipelothrix_phage	35.1	7.9e-87
WP_141783109.1|1518091_1518496_+	recombinase	NA	NA	NA	NA	NA
WP_166481484.1|1518482_1520069_+	recombinase family protein	NA	A0A2K5B2B4	Erysipelothrix_phage	46.9	1.7e-124
WP_166481485.1|1520122_1520386_-	thiamine permease	NA	NA	NA	NA	NA
WP_166481486.1|1520700_1522071_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	50.8	2.5e-124
