assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_011604585.1_ASM1160458v1	NZ_CP050079	Pediococcus acidilactici strain PMC48 chromosome, complete genome	1	421768-422067	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas2,csn2	csa3,cas1,cas2,csn2,DEDDh,DinG,cas3	Type II-A	GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATC,GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATC,GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATC	36,36,36	0	0	NA	NA	NA:NA:NA	4,4,4	4	TypeII-A	csa3,cas1,cas2,csn2,DEDDh,DinG,cas3	NA,NA	NA|182aa|up_9|NZ_CP050079.1_405404_405950_+	cd01043, DPS, DPS protein, ferritin-like diiron-binding domain	NA|621aa|up_8|NZ_CP050079.1_405942_407805_+	cd02079, P-type_ATPase_HM, P-type heavy metal-transporting ATPase	NA|518aa|up_7|NZ_CP050079.1_407931_409485_+	PRK00074, guaA, GMP synthase; Reviewed	NA|215aa|up_6|NZ_CP050079.1_409768_410413_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|470aa|up_5|NZ_CP050079.1_410604_412014_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|845aa|up_4|NZ_CP050079.1_412040_414575_+	cd09601, M1_APN-Q_like, Peptidase M1 aminopeptidase N catalytic domain family which includes aminopeptidase N (APN), aminopeptidase Q (APQ), tricorn interacting factor F3, and endoplasmic reticulum aminopeptidase 1 (ERAP1)	NA|194aa|up_3|NZ_CP050079.1_414802_415384_-	pfam09726, Macoilin, Macoilin family	cas1|302aa|up_2|NZ_CP050079.1_419882_420788_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|102aa|up_1|NZ_CP050079.1_420765_421071_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|224aa|up_0|NZ_CP050079.1_421067_421739_+	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	NA|216aa|down_0|NZ_CP050079.1_423584_424232_-	pfam02517, Abi, CAAX protease self-immunity	NA|95aa|down_1|NZ_CP050079.1_424421_424706_+	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|541aa|down_2|NZ_CP050079.1_424728_426351_+	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|611aa|down_3|NZ_CP050079.1_426649_428482_+	pfam13520, AA_permease_2, Amino acid permease	NA|392aa|down_4|NZ_CP050079.1_428703_429879_+	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|213aa|down_5|NZ_CP050079.1_429948_430587_-	COG1739, COG1739, Uncharacterized conserved protein [Function unknown]	NA|440aa|down_6|NZ_CP050079.1_430618_431938_+	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	NA|185aa|down_7|NZ_CP050079.1_432737_433292_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|788aa|down_8|NZ_CP050079.1_433440_435804_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|372aa|down_9|NZ_CP050079.1_435881_436998_+	PRK00578, prfB, peptide chain release factor 2; Validated
GCF_011604585.1_ASM1160458v1	NZ_CP050079	Pediococcus acidilactici strain PMC48 chromosome, complete genome	2	620364-620467	2	CRISPRCasFinder	no		csa3,cas1,cas2,csn2,DEDDh,DinG,cas3	Orphan	TTAGCTCAGTTGGGAGAGCATCTG	24	0	0	NA	NA	NA	1	1	Orphan	csa3,cas1,cas2,csn2,DEDDh,DinG,cas3	NA|85aa|up_9|NZ_CP050079.1_603648_603903_+,NA|63aa|up_6|NZ_CP050079.1_608249_608438_+,NA|244aa|down_0|NZ_CP050079.1_622410_623142_-	NA|85aa|up_9|NZ_CP050079.1_603648_603903_+	NA	NA|326aa|up_8|NZ_CP050079.1_604521_605499_+	PRK05458, PRK05458, guanosine 5'-monophosphate oxidoreductase; Provisional	NA|736aa|up_7|NZ_CP050079.1_605825_608033_-	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]	NA|63aa|up_6|NZ_CP050079.1_608249_608438_+	NA	NA|89aa|up_5|NZ_CP050079.1_608580_608847_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|575aa|up_4|NZ_CP050079.1_608846_610571_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|258aa|up_3|NZ_CP050079.1_610643_611417_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|396aa|up_2|NZ_CP050079.1_611502_612690_+	cd03817, GT4_UGDG-like, UDP-Glc:1,2-diacylglycerol 3-a-glucosyltransferase and similar proteins	NA|339aa|up_1|NZ_CP050079.1_612720_613737_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|335aa|up_0|NZ_CP050079.1_613782_614787_+	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|244aa|down_0|NZ_CP050079.1_622410_623142_-	NA	NA|397aa|down_1|NZ_CP050079.1_623313_624504_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|490aa|down_2|NZ_CP050079.1_624679_626149_+	cd17502, MFS_Azr1_MDR_like, Saccharomyces cerevisiae Azole resistance protein 1 (Azr1p), and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|188aa|down_3|NZ_CP050079.1_626228_626792_-	pfam06962, rRNA_methylase, Putative rRNA methylase	NA|806aa|down_4|NZ_CP050079.1_627825_630243_+	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|561aa|down_5|NZ_CP050079.1_630498_632181_+	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|240aa|down_6|NZ_CP050079.1_632191_632911_+	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like	NA|277aa|down_7|NZ_CP050079.1_633017_633848_-	cd01171, YXKO-related, B	NA|154aa|down_8|NZ_CP050079.1_633973_634435_+	pfam00582, Usp, Universal stress protein family	NA|95aa|down_9|NZ_CP050079.1_634764_635049_+	pfam09862, DUF2089, Protein of unknown function (DUF2089)
GCF_011604585.1_ASM1160458v1	NZ_CP050079	Pediococcus acidilactici strain PMC48 chromosome, complete genome	3	1482276-1482432	2	PILER-CR	no		csa3,cas1,cas2,csn2,DEDDh,DinG,cas3	Orphan	CTTCGTCGCCTAGCTCCTCAACATTACTGTGACGCTC	37	0	0	NA	NA	NA	2	2	Orphan	csa3,cas1,cas2,csn2,DEDDh,DinG,cas3	NA|245aa|up_9|NZ_CP050079.1_1471158_1471893_-,NA|54aa|down_0|NZ_CP050079.1_1482712_1482874_+,NA|30aa|down_1|NZ_CP050079.1_1482979_1483069_+	NA|245aa|up_9|NZ_CP050079.1_1471158_1471893_-	NA	NA|121aa|up_8|NZ_CP050079.1_1472137_1472500_-	pfam07843, DUF1634, Protein of unknown function (DUF1634)	NA|723aa|up_7|NZ_CP050079.1_1473508_1475677_-	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|523aa|up_6|NZ_CP050079.1_1475780_1477349_-	PRK00741, prfC, peptide chain release factor 3; Provisional	NA|135aa|up_5|NZ_CP050079.1_1477415_1477820_-	cd02171, G3P_Cytidylyltransferase, glycerol-3-phosphate cytidylyltransferase	NA|377aa|up_4|NZ_CP050079.1_1477895_1479026_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|185aa|up_3|NZ_CP050079.1_1479106_1479661_-	PRK13662, PRK13662, hypothetical protein; Provisional	NA|272aa|up_2|NZ_CP050079.1_1479753_1480569_-	PRK14135, recX, recombination regulator RecX; Provisional	NA|153aa|up_1|NZ_CP050079.1_1480621_1481080_+	PRK07308, PRK07308, flavodoxin; Validated	NA|209aa|up_0|NZ_CP050079.1_1481281_1481908_-	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|54aa|down_0|NZ_CP050079.1_1482712_1482874_+	NA	NA|30aa|down_1|NZ_CP050079.1_1482979_1483069_+	NA	NA|148aa|down_2|NZ_CP050079.1_1483258_1483702_+	cd17255, RMtype1_S_Fco49512ORF2615P-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Flavobacterium columnare S subunit (S	NA|149aa|down_3|NZ_CP050079.1_1484644_1485091_-	cd17494, RMtype1_S_Sma198ORF994P-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Streptococcus macedonicus ACA-DC 198 S subunit (S1	NA|1032aa|down_4|NZ_CP050079.1_1485171_1488267_-	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	NA|387aa|down_5|NZ_CP050079.1_1488329_1489490_-	cd17262, RMtype1_S_Aco12261I-TRD2-CR2, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Aminobacterium colombiense DSM 12261 S subunit (S	NA|860aa|down_6|NZ_CP050079.1_1489489_1492069_-	pfam02384, N6_Mtase, N-6 DNA Methylase	NA|74aa|down_7|NZ_CP050079.1_1492085_1492307_-	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|872aa|down_8|NZ_CP050079.1_1492320_1494936_-	COG1204, COG1204, Superfamily II helicase [General function prediction only]	NA|440aa|down_9|NZ_CP050079.1_1494940_1496260_-	pfam08878, DUF1837, Domain of unknown function (DUF1837)
