The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP050062	Stenotrophomonas rhizophila strain JC1 chromosome, complete genome	4268161	1463389	1519113	4268161	portal,protease,integrase,terminase,capsid	Pseudomonas_phage(26.67%)	55	1471156:1471172	1513081:1513097
WP_136007004.1|1463389_1463833_+|protease	ClpXP protease specificity-enhancing factor	protease	A0A1S5R3H3	Pseudomonas_phage	51.3	3.2e-25
WP_166472819.1|1463931_1464288_-	DUF3301 domain-containing protein	NA	NA	NA	NA	NA
WP_166472820.1|1464371_1465391_-	DUF2272 domain-containing protein	NA	NA	NA	NA	NA
WP_026070577.1|1465494_1466352_-	carboxylating nicotinate-nucleotide diphosphorylase	NA	NA	NA	NA	NA
WP_017354844.1|1466348_1466618_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017354843.1|1466676_1467180_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	40.0	1.5e-18
WP_017354842.1|1467176_1468325_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_136007000.1|1468392_1468974_-	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	38.3	1.4e-36
WP_136006998.1|1469092_1469413_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_136006997.1|1469409_1470150_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_037591357.1|1470508_1473733_+	TonB-dependent receptor	NA	NA	NA	NA	NA
1471156:1471172	attL	TGCGCTGGAAGCGATCA	NA	NA	NA	NA
WP_017356378.1|1473983_1475372_+	LOG family protein	NA	NA	NA	NA	NA
WP_017356379.1|1475543_1476059_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_017356380.1|1476055_1476532_+	type IV pilus modification protein PilV	NA	NA	NA	NA	NA
WP_017356381.1|1476528_1477695_+	PilW family protein	NA	NA	NA	NA	NA
WP_017356382.1|1477699_1478209_+	pilus assembly protein	NA	NA	NA	NA	NA
WP_166472821.1|1478220_1482063_+	pilus assembly protein	NA	NA	NA	NA	NA
WP_017356384.1|1482075_1482504_+	type IV pilin protein	NA	NA	NA	NA	NA
WP_166472822.1|1482707_1483244_-	hypothetical protein	NA	NA	NA	NA	NA
WP_136006990.1|1483395_1485420_+	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_166473647.1|1485853_1488211_+	DNA internalization-related competence protein ComEC/Rec2	NA	M1PSD2	Streptococcus_phage	37.2	4.1e-10
WP_136006988.1|1488214_1488892_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_136006985.1|1488895_1489318_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_136006983.1|1489314_1491063_+	lipid A export permease/ATP-binding protein MsbA	NA	W8CYL7	Bacillus_phage	33.1	2.1e-56
WP_166472823.1|1491062_1492085_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_017357523.1|1492176_1492950_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_166472824.1|1492946_1493435_+	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_166472825.1|1493431_1494847_+	hypothetical protein	NA	NA	NA	NA	NA
WP_017357520.1|1494843_1496691_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_017357519.1|1496700_1497324_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_153164370.1|1497546_1498212_-	hypothetical protein	NA	NA	NA	NA	NA
WP_136006972.1|1498293_1499400_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_166472826.1|1501697_1502723_-|integrase	tyrosine-type recombinase/integrase	integrase	C8CLF4	Xylella_phage	57.0	4.1e-100
WP_136006229.1|1502724_1502943_-	DUF4224 domain-containing protein	NA	C8CLF5	Xylella_phage	62.5	4.9e-19
WP_166472827.1|1502926_1503226_-	hypothetical protein	NA	NA	NA	NA	NA
WP_166472828.1|1503261_1504053_+	hypothetical protein	NA	NA	NA	NA	NA
WP_166472829.1|1504108_1506304_-	DNA methyltransferase	NA	Q5QF27	Pseudomonas_virus	44.3	7.6e-160
WP_166472830.1|1506296_1507022_-	hypothetical protein	NA	A0A077KCB2	Edwardsiella_phage	37.2	2.2e-31
WP_166472831.1|1507021_1507372_-	hypothetical protein	NA	B7SYG6	Stenotrophomonas_phage	63.1	2.1e-24
WP_166472832.1|1507364_1507706_-	hypothetical protein	NA	NA	NA	NA	NA
WP_166472833.1|1507698_1508799_-	hypothetical protein	NA	B7SYG5	Stenotrophomonas_phage	54.1	5.9e-28
WP_166472834.1|1508795_1509341_-	hypothetical protein	NA	NA	NA	NA	NA
WP_166472835.1|1509333_1509516_-	hypothetical protein	NA	NA	NA	NA	NA
WP_166472836.1|1509634_1509871_-	hypothetical protein	NA	NA	NA	NA	NA
WP_166472837.1|1509867_1510110_-	hypothetical protein	NA	NA	NA	NA	NA
WP_166472838.1|1510106_1510298_-	hypothetical protein	NA	NA	NA	NA	NA
WP_166472839.1|1510924_1511491_-	UDP-N-acetylglucosamine acyltransferase	NA	NA	NA	NA	NA
WP_166472840.1|1511533_1512214_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_166472384.1|1512287_1512743_+	hypothetical protein	NA	NA	NA	NA	NA
WP_166472841.1|1512744_1513014_+	hypothetical protein	NA	NA	NA	NA	NA
WP_166472842.1|1513888_1514209_+	hypothetical protein	NA	NA	NA	NA	NA
1513081:1513097	attR	TGATCGCTTCCAGCGCA	NA	NA	NA	NA
WP_166472843.1|1514186_1515743_+|terminase	terminase large subunit	terminase	A0A0U4B0M7	Pseudomonas_phage	66.3	1.6e-204
WP_166472844.1|1515739_1517032_+|portal	phage portal protein	portal	G0ZT36	Aeromonas_phage	65.6	4.5e-152
WP_153164337.1|1517035_1517902_+|protease	Clp protease ClpP	protease	A0A2H4PI16	Pseudomonas_phage	59.0	2.3e-75
WP_166472845.1|1517913_1519113_+|capsid	phage major capsid protein	capsid	A0A2H4PI18	Pseudomonas_phage	60.9	1.5e-125
>prophage 2
NZ_CP050062	Stenotrophomonas rhizophila strain JC1 chromosome, complete genome	4268161	2032810	2041931	4268161	transposase	Xanthomonas_phage(66.67%)	10	NA	NA
WP_166473668.1|2032810_2033743_+	replication initiation protein	NA	A0A077JDC0	Xanthomonas_phage	72.6	1.5e-128
WP_166473007.1|2033739_2034024_+	DNA-binding protein	NA	A0A1W6DXU2	Xanthomonas_phage	70.5	2.6e-28
WP_166473008.1|2034400_2034652_+	hypothetical protein	NA	NA	NA	NA	NA
WP_166473009.1|2034767_2036147_+	hypothetical protein	NA	NA	NA	NA	NA
WP_166473010.1|2036146_2036476_+	DUF2523 domain-containing protein	NA	NA	NA	NA	NA
WP_166473011.1|2036477_2037692_+	zonular occludens toxin family protein	NA	B1NI81	Stenotrophomonas_phage	35.6	7.4e-48
WP_166473012.1|2037769_2038156_+	DUF4124 domain-containing protein	NA	A0A077JCA3	Xanthomonas_phage	45.4	9.6e-18
WP_166473013.1|2038196_2038460_-	hypothetical protein	NA	NA	NA	NA	NA
WP_166473014.1|2038686_2038842_+	hypothetical protein	NA	A0A077JDD0	Xanthomonas_phage	64.6	1.5e-14
WP_017355001.1|2038937_2041931_-|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	26.6	2.4e-76
>prophage 3
NZ_CP050062	Stenotrophomonas rhizophila strain JC1 chromosome, complete genome	4268161	2757741	2817450	4268161	tail,protease,tRNA	Siphoviridae_environmental_samples(40.0%)	54	NA	NA
WP_017356629.1|2757741_2759154_+|tRNA	cysteine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_017356630.1|2759289_2759739_+	SufE family protein	NA	NA	NA	NA	NA
WP_166473235.1|2759735_2760989_+	MFS transporter	NA	NA	NA	NA	NA
WP_166473236.1|2761139_2762390_-	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
WP_136003254.1|2762662_2762917_+	membrane protein insertion efficiency factor YidD	NA	NA	NA	NA	NA
WP_136003253.1|2762918_2764265_+	dihydroorotase	NA	NA	NA	NA	NA
WP_136003252.1|2764264_2765110_+	M23 family metallopeptidase	NA	A0A075BS18	Microcystis_phage	43.0	4.4e-15
WP_166473237.1|2765155_2765863_-	squalene/phytoene synthase family protein	NA	NA	NA	NA	NA
WP_153165230.1|2765971_2766640_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_017354965.1|2766659_2767391_-	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
WP_017354966.1|2767407_2768751_-	TRZ/ATZ family hydrolase	NA	NA	NA	NA	NA
WP_017354967.1|2768981_2769551_-	elongation factor P	NA	NA	NA	NA	NA
WP_136003250.1|2769675_2770680_+	EF-P beta-lysylation protein EpmB	NA	NA	NA	NA	NA
WP_136003249.1|2770746_2772873_-	GGDEF and EAL domain-containing protein	NA	NA	NA	NA	NA
WP_017354970.1|2772869_2773793_-	phosphate/phosphite/phosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_017354971.1|2773854_2774622_-	RNA methyltransferase	NA	NA	NA	NA	NA
WP_017354972.1|2774741_2775569_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_017354973.1|2775809_2776682_-|protease	protease HtpX	protease	NA	NA	NA	NA
WP_153165163.1|2776775_2777660_+|tRNA	tRNA glutamyl-Q(34) synthetase GluQRS	tRNA	NA	NA	NA	NA
WP_017354975.1|2777736_2778477_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_136003247.1|2778645_2779197_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_051008666.1|2779276_2780230_-	TraB/GumN family protein	NA	NA	NA	NA	NA
WP_017357616.1|2780240_2781143_-	DUF1684 domain-containing protein	NA	NA	NA	NA	NA
WP_166473238.1|2781190_2783071_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	34.8	2.1e-86
WP_166473239.1|2783230_2784826_-	AMIN domain-containing protein	NA	Q0H257	Geobacillus_phage	28.6	5.8e-16
WP_166473240.1|2784914_2785397_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_153165164.1|2785393_2786878_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_136003242.1|2786903_2787992_+|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
WP_166473241.1|2788047_2789388_+	exodeoxyribonuclease VII large subunit	NA	A0A1B3AYB4	Gordonia_phage	36.5	1.3e-32
WP_153165166.1|2789425_2790322_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_166473696.1|2790381_2792205_-	SUMF1/EgtB/PvdO family nonheme iron enzyme	NA	A0A075BSL8	Microcystis_phage	32.3	3.8e-24
WP_153165167.1|2792369_2793449_+	ribonuclease D	NA	NA	NA	NA	NA
WP_166473242.1|2793598_2794771_+	beta-lactamase family protein	NA	A0A1W6JTS2	Mycobacterium_phage	23.5	1.7e-09
WP_166473697.1|2794915_2797234_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_017355238.1|2797759_2797927_-	hypothetical protein	NA	NA	NA	NA	NA
WP_136003237.1|2798048_2798855_-	hypothetical protein	NA	Q37850	Escherichia_phage	40.2	3.1e-26
WP_166473243.1|2799083_2799485_+	hypothetical protein	NA	NA	NA	NA	NA
WP_166473698.1|2799498_2800278_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_166473244.1|2800407_2801604_+	YbfB/YjiJ family MFS transporter	NA	NA	NA	NA	NA
WP_166473245.1|2801889_2802504_-	hypothetical protein	NA	NA	NA	NA	NA
WP_166473246.1|2802561_2802855_-	hypothetical protein	NA	NA	NA	NA	NA
WP_166473247.1|2802999_2804136_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0A7RTT7	Clostridium_phage	30.2	6.3e-33
WP_166473248.1|2804125_2804854_-	hypothetical protein	NA	NA	NA	NA	NA
WP_166473249.1|2805035_2805482_-	BLUF domain-containing protein	NA	NA	NA	NA	NA
WP_166473250.1|2805583_2805985_-	hypothetical protein	NA	NA	NA	NA	NA
WP_166473251.1|2806081_2806747_+	SOS response-associated peptidase	NA	B7SYF4	Stenotrophomonas_phage	76.0	1.6e-92
WP_166473252.1|2806849_2807554_-	hypothetical protein	NA	NA	NA	NA	NA
WP_166473253.1|2807837_2811440_-|tail	phage tail protein	tail	A0A2R3UA88	Siphoviridae_environmental_samples	58.3	0.0e+00
WP_166473254.1|2811436_2812039_-|tail	tail assembly protein	tail	A0A2R3UAR3	Siphoviridae_environmental_samples	55.4	1.1e-47
WP_166473255.1|2812031_2812772_-	peptidase P60	NA	A0A2R3UAR4	Siphoviridae_environmental_samples	61.2	4.2e-86
WP_166473256.1|2812841_2813537_-|tail	phage minor tail protein L	tail	A0A2R3UA90	Siphoviridae_environmental_samples	65.4	5.3e-91
WP_166472386.1|2813533_2814250_-	hypothetical protein	NA	NA	NA	NA	NA
WP_166473257.1|2814259_2814592_-|tail	phage tail protein	tail	A0A2R3UA73	Siphoviridae_environmental_samples	48.6	1.2e-21
WP_166473258.1|2814660_2817450_-|tail	phage tail tape measure protein	tail	A0A2R3UAA7	Siphoviridae_environmental_samples	29.8	8.4e-79
>prophage 4
NZ_CP050062	Stenotrophomonas rhizophila strain JC1 chromosome, complete genome	4268161	2820834	2828946	4268161	integrase	Pseudomonas_virus(33.33%)	11	2825032:2825048	2833970:2833986
WP_166473265.1|2820834_2821773_+	hypothetical protein	NA	C9DGB6	Deftia_phage	51.4	1.9e-14
WP_166473266.1|2821765_2821951_+	hypothetical protein	NA	NA	NA	NA	NA
WP_166473267.1|2821943_2822294_+	hypothetical protein	NA	B7SYG6	Stenotrophomonas_phage	63.1	2.1e-24
WP_166473268.1|2822560_2822863_-	hypothetical protein	NA	NA	NA	NA	NA
WP_166473269.1|2822994_2823645_+	hypothetical protein	NA	Q5QF30	Pseudomonas_virus	42.0	5.9e-36
WP_166473270.1|2823637_2825728_+	DNA methyltransferase	NA	Q5QF27	Pseudomonas_virus	44.0	5.0e-137
2825032:2825048	attL	CGTCGTGGCCGGCGGCG	NA	NA	NA	NA
WP_166473271.1|2826196_2826517_+	hypothetical protein	NA	NA	NA	NA	NA
WP_166473272.1|2826536_2826863_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_166473273.1|2826907_2827801_+|integrase	site-specific integrase	integrase	A0A0M4R586	Salmonella_phage	35.7	1.3e-46
WP_017355244.1|2828016_2828190_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_017355245.1|2828406_2828946_+	lipocalin family protein	NA	A0A2I2L3Z7	Orpheovirus	33.3	6.9e-14
2833970:2833986	attR	CGTCGTGGCCGGCGGCG	NA	NA	NA	NA
