assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_011604605.1_ASM1160460v1	NZ_CP050062	Stenotrophomonas rhizophila strain JC1 chromosome, complete genome	1	395943-396039	1	CRISPRCasFinder	no		cas3,DEDDh,csa3,WYL,Cas9_archaeal,DinG	Orphan	CCCCCGTAGAGCCGGGCTCTGCCCGGCTGC	30	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,WYL,Cas9_archaeal,DinG	NA|31aa|up_4|NZ_CP050062.1_391402_391495_-,NA|223aa|up_3|NZ_CP050062.1_391784_392453_-,NA	NA|240aa|up_9|NZ_CP050062.1_383563_384283_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|887aa|up_8|NZ_CP050062.1_384263_386924_-	COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]	NA|217aa|up_7|NZ_CP050062.1_386961_387612_-	pfam02669, KdpC, K+-transporting ATPase, c chain	NA|684aa|up_6|NZ_CP050062.1_387608_389660_-	PRK01122, PRK01122, potassium-transporting ATPase subunit KdpB	NA|573aa|up_5|NZ_CP050062.1_389671_391390_-	PRK05482, PRK05482, potassium-transporting ATPase subunit A; Provisional	NA|31aa|up_4|NZ_CP050062.1_391402_391495_-	NA	NA|223aa|up_3|NZ_CP050062.1_391784_392453_-	NA	NA|220aa|up_2|NZ_CP050062.1_392472_393132_-	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated	NA|267aa|up_1|NZ_CP050062.1_393294_394095_+	cd10281, Nape_like_AP-endo, Neisseria meningitides Nape-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases	NA|511aa|up_0|NZ_CP050062.1_394091_395624_+	PRK11902, ampG, muropeptide transporter; Reviewed	NA|375aa|down_0|NZ_CP050062.1_396078_397203_-	PRK09585, anmK, anhydro-N-acetylmuramic acid kinase; Reviewed	NA|488aa|down_1|NZ_CP050062.1_397299_398763_-	PRK11649, PRK11649, putative peptidase; Provisional	NA|404aa|down_2|NZ_CP050062.1_398931_400143_+	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated	NA|572aa|down_3|NZ_CP050062.1_406528_408244_-	cd05660, M28_like_PA, M28 Zn-peptidase containing a protease-associated (PA) domain insert	NA|220aa|down_4|NZ_CP050062.1_408301_408961_-	COG3595, COG3595, Uncharacterized conserved protein [Function unknown]	NA|458aa|down_5|NZ_CP050062.1_409015_410389_+	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	NA|477aa|down_6|NZ_CP050062.1_410537_411968_+	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|231aa|down_7|NZ_CP050062.1_412077_412770_-	COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism]	NA|448aa|down_8|NZ_CP050062.1_412998_414342_+	pfam03349, Toluene_X, Outer membrane protein transport protein (OMPP1/FadL/TodX)	NA|320aa|down_9|NZ_CP050062.1_414424_415384_-	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
GCF_011604605.1_ASM1160460v1	NZ_CP050062	Stenotrophomonas rhizophila strain JC1 chromosome, complete genome	2	472770-472955	1	PILER-CR	no		cas3,DEDDh,csa3,WYL,Cas9_archaeal,DinG	Orphan	CACCGATAGCCCTTCATCGCGCTGCGCGCGACAGCCGGGCAGAGCCCGGCTCT	53	2	7	472823-472840|472823-472840|472894-472932|472894-472932|472894-472932|472894-472932|472894-472932	NZ_CP050062.1_472420-472437|NZ_CP050062.1_472687-472704|NZ_CP050062.1_472328-472366|NZ_CP050062.1_472731-472769|NZ_CP050062.1_472998-473036|NZ_CP050062.1_472461-472499|NZ_CP050062.1_472595-472633	NA	2	2	Orphan	cas3,DEDDh,csa3,WYL,Cas9_archaeal,DinG	NA|174aa|up_6|NZ_CP050062.1_466764_467286_-,NA|169aa|up_5|NZ_CP050062.1_467291_467798_-,NA|144aa|down_0|NZ_CP050062.1_473086_473518_-,NA|248aa|down_7|NZ_CP050062.1_481171_481915_-,NA|277aa|down_8|NZ_CP050062.1_481911_482742_-,NA|631aa|down_9|NZ_CP050062.1_482731_484624_-	NA|505aa|up_9|NZ_CP050062.1_461150_462665_-	TIGR03458, Propionyl-CoA:succinate_CoA_transferase, succinate CoA transferase	NA|943aa|up_8|NZ_CP050062.1_462979_465808_+	PRK11072, PRK11072, bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase	NA|185aa|up_7|NZ_CP050062.1_466124_466679_-	COG1738, yhhQ, Uncharacterized member of the PurR regulon [General function prediction only]	NA|174aa|up_6|NZ_CP050062.1_466764_467286_-	NA	NA|169aa|up_5|NZ_CP050062.1_467291_467798_-	NA	NA|288aa|up_4|NZ_CP050062.1_467832_468696_-	COG4727, COG4727, Uncharacterized protein conserved in bacteria [Function unknown]	NA|323aa|up_3|NZ_CP050062.1_468733_469702_-	pfam06258, Mito_fiss_Elm1, Mitochondrial fission ELM1	NA|197aa|up_2|NZ_CP050062.1_469798_470389_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|241aa|up_1|NZ_CP050062.1_470472_471195_+	COG2353, COG2353, Uncharacterized conserved protein [Function unknown]	NA|262aa|up_0|NZ_CP050062.1_471547_472333_+	pfam03929, PepSY_TM, PepSY-associated TM region	NA|144aa|down_0|NZ_CP050062.1_473086_473518_-	NA	NA|266aa|down_1|NZ_CP050062.1_473575_474373_-	cd06193, siderophore_interacting, Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family	NA|168aa|down_2|NZ_CP050062.1_474466_474970_-	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|896aa|down_3|NZ_CP050062.1_475451_478139_+	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed	NA|85aa|down_4|NZ_CP050062.1_478266_478521_+	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair]	NA|369aa|down_5|NZ_CP050062.1_478534_479640_-	pfam13683, rve_3, Integrase core domain	NA|474aa|down_6|NZ_CP050062.1_479684_481106_-	pfam15515, MvaI_BcnI, MvaI/BcnI restriction endonuclease family	NA|248aa|down_7|NZ_CP050062.1_481171_481915_-	NA	NA|277aa|down_8|NZ_CP050062.1_481911_482742_-	NA	NA|631aa|down_9|NZ_CP050062.1_482731_484624_-	NA
GCF_011604605.1_ASM1160460v1	NZ_CP050062	Stenotrophomonas rhizophila strain JC1 chromosome, complete genome	3	643916-644023	2	CRISPRCasFinder	no		cas3,DEDDh,csa3,WYL,Cas9_archaeal,DinG	Orphan	CCAACAGCGTGGCCGTGGGTGGCG	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,WYL,Cas9_archaeal,DinG	NA,NA	NA|63aa|up_9|NZ_CP050062.1_626287_626476_-	pfam01679, Pmp3, Proteolipid membrane potential modulator	NA|142aa|up_8|NZ_CP050062.1_626521_626947_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|493aa|up_7|NZ_CP050062.1_627032_628511_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|360aa|up_6|NZ_CP050062.1_628615_629695_+	TIGR04407, LptF_YjgP, LPS export ABC transporter permease LptF	NA|369aa|up_5|NZ_CP050062.1_629691_630798_+	TIGR04408, LptG_lptG, LPS export ABC transporter permease LptG	NA|158aa|up_4|NZ_CP050062.1_630957_631431_-	pfam06271, RDD, RDD family	NA|326aa|up_3|NZ_CP050062.1_631501_632479_+	PRK00283, xerD, tyrosine recombinase	NA|260aa|up_2|NZ_CP050062.1_632581_633361_+	PRK10877, PRK10877, protein disulfide isomerase II DsbC; Provisional	NA|702aa|up_1|NZ_CP050062.1_633430_635536_-	cd06548, GH18_chitinase, The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites	NA|1310aa|up_0|NZ_CP050062.1_635825_639755_+	PRK05297, PRK05297, phosphoribosylformylglycinamidine synthase; Provisional	NA|620aa|down_0|NZ_CP050062.1_647939_649799_+	cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13	NA|576aa|down_1|NZ_CP050062.1_649922_651650_+	TIGR02533, Type_II_secretion_system_protein_E, type II secretion system protein E	NA|407aa|down_2|NZ_CP050062.1_651687_652908_+	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]	NA|127aa|down_3|NZ_CP050062.1_653003_653384_+	pfam08334, T2SSG, Type II secretion system (T2SS), protein G	NA|167aa|down_4|NZ_CP050062.1_653383_653884_+	COG4970, FimT, Tfp pilus assembly protein FimT [Cell motility and secretion / Intracellular trafficking and secretion]	NA|143aa|down_5|NZ_CP050062.1_653880_654309_+	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]	NA|214aa|down_6|NZ_CP050062.1_654305_654947_+	PRK08808, PRK08808, type II secretion system protein J	NA|289aa|down_7|NZ_CP050062.1_654943_655810_+	pfam03934, T2SSK, Type II secretion system (T2SS), protein K	NA|387aa|down_8|NZ_CP050062.1_655806_656967_+	pfam05137, PilN, Fimbrial assembly protein (PilN)	NA|253aa|down_9|NZ_CP050062.1_656941_657700_+	pfam10741, T2SSM_b, Type II secretion system (T2SS), protein M subtype b
GCF_011604605.1_ASM1160460v1	NZ_CP050062	Stenotrophomonas rhizophila strain JC1 chromosome, complete genome	4	2783097-2783202	3	CRISPRCasFinder	no		cas3,DEDDh,csa3,WYL,Cas9_archaeal,DinG	Orphan	AGCCGGCCAGAGGCCGGCTCTACGGG	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,WYL,Cas9_archaeal,DinG	NA,NA	NA|308aa|up_9|NZ_CP050062.1_2772869_2773793_-	pfam12974, Phosphonate-bd, ABC transporter, phosphonate, periplasmic substrate-binding protein	NA|256aa|up_8|NZ_CP050062.1_2773854_2774622_-	COG0565, LasT, rRNA methylase [Translation, ribosomal structure and biogenesis]	NA|276aa|up_7|NZ_CP050062.1_2774741_2775569_+	cd01639, IMPase, IMPase, inositol monophosphatase and related domains	NA|291aa|up_6|NZ_CP050062.1_2775809_2776682_-	PRK05457, PRK05457, protease HtpX	NA|295aa|up_5|NZ_CP050062.1_2776775_2777660_+	PRK05710, PRK05710, tRNA glutamyl-Q(34) synthetase GluQRS	NA|247aa|up_4|NZ_CP050062.1_2777736_2778477_+	TIGR01829, Acetoacetyl-CoA_reductase, acetoacetyl-CoA reductase	NA|184aa|up_3|NZ_CP050062.1_2778645_2779197_+	TIGR01848, Uncharacterized_protein_Alvin_0064, polyhydroxyalkanoate synthesis repressor PhaR	NA|318aa|up_2|NZ_CP050062.1_2779276_2780230_-	cd14789, Tiki, Tiki homology domain antagonizes Wnt function via cleavage of amino-terminal residues	NA|301aa|up_1|NZ_CP050062.1_2780240_2781143_-	COG3358, COG3358, Uncharacterized conserved protein [Function unknown]	NA|627aa|up_0|NZ_CP050062.1_2781190_2783071_-	PRK00095, mutL, DNA mismatch repair endonuclease MutL	NA|532aa|down_0|NZ_CP050062.1_2783230_2784826_-	COG0860, AmiC, N-acetylmuramoyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]	NA|161aa|down_1|NZ_CP050062.1_2784914_2785397_-	COG0802, COG0802, Predicted ATPase or kinase [General function prediction only]	NA|495aa|down_2|NZ_CP050062.1_2785393_2786878_-	PRK10565, PRK10565, putative carbohydrate kinase; Provisional	NA|363aa|down_3|NZ_CP050062.1_2786903_2787992_+	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|447aa|down_4|NZ_CP050062.1_2788047_2789388_+	PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed	NA|299aa|down_5|NZ_CP050062.1_2789425_2790322_-	cd07331, M48C_Oma1_like, Peptidase M48C, integral membrane endopeptidase	NA|608aa|down_6|NZ_CP050062.1_2790381_2792205_-	pfam03781, FGE-sulfatase, Sulfatase-modifying factor enzyme 1	NA|360aa|down_7|NZ_CP050062.1_2792369_2793449_+	TIGR01388, Ribonuclease_D, ribonuclease D	NA|391aa|down_8|NZ_CP050062.1_2793598_2794771_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|773aa|down_9|NZ_CP050062.1_2794915_2797234_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel
GCF_011604605.1_ASM1160460v1	NZ_CP050062	Stenotrophomonas rhizophila strain JC1 chromosome, complete genome	5	3172192-3172383	1	CRT	no		cas3,DEDDh,csa3,WYL,Cas9_archaeal,DinG	Orphan	GCCTTCTTGGCNGCCNTCTTC	21	0	0	NA	NA	NA	4	4	Orphan	cas3,DEDDh,csa3,WYL,Cas9_archaeal,DinG	NA|286aa|up_9|NZ_CP050062.1_3157542_3158400_+,NA	NA|286aa|up_9|NZ_CP050062.1_3157542_3158400_+	NA	NA|920aa|up_8|NZ_CP050062.1_3158841_3161601_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|200aa|up_7|NZ_CP050062.1_3161735_3162335_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|307aa|up_6|NZ_CP050062.1_3162474_3163395_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|826aa|up_5|NZ_CP050062.1_3163391_3165869_+	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed	NA|170aa|up_4|NZ_CP050062.1_3165956_3166466_+	pfam14539, DUF4442, Domain of unknown function (DUF4442)	NA|119aa|up_3|NZ_CP050062.1_3166675_3167032_-	pfam06993, DUF1304, Protein of unknown function (DUF1304)	NA|445aa|up_2|NZ_CP050062.1_3167060_3168395_-	COG3202, COG3202, ATP/ADP translocase [Energy production and conversion]	NA|535aa|up_1|NZ_CP050062.1_3168600_3170205_+	PRK02106, PRK02106, choline dehydrogenase; Validated	NA|465aa|up_0|NZ_CP050062.1_3170358_3171753_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|132aa|down_0|NZ_CP050062.1_3173347_3173743_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|371aa|down_1|NZ_CP050062.1_3173839_3174952_-	PRK00389, gcvT, glycine cleavage system aminomethyltransferase GcvT	NA|144aa|down_2|NZ_CP050062.1_3175046_3175478_-	COG1585, COG1585, Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|321aa|down_3|NZ_CP050062.1_3175479_3176442_-	COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]	NA|108aa|down_4|NZ_CP050062.1_3176502_3176826_-	PRK02237, PRK02237, YnfA family protein	NA|271aa|down_5|NZ_CP050062.1_3176822_3177635_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|268aa|down_6|NZ_CP050062.1_3177654_3178458_-	COG1218, CysQ, 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase [Inorganic ion transport and metabolism]	NA|183aa|down_7|NZ_CP050062.1_3178454_3179003_-	PRK11762, nudE, adenosine nucleotide hydrolase NudE; Provisional	NA|464aa|down_8|NZ_CP050062.1_3179059_3180451_+	PRK08742, PRK08742, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional	NA|245aa|down_9|NZ_CP050062.1_3180441_3181176_+	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional
